BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748389.2.1
(663 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK068362.1| Oryza sativa (japonica cultivar-group) cDNA... 147 9e-033
gb|AACV01002743.1| Oryza sativa (japonica cultivar-group) c... 147 9e-033
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
ref|NM_190739.1| Oryza sativa (japonica cultivar-group), p... 147 9e-033
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 147 9e-033
dbj|AP003270.4| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 147 9e-033
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 147 9e-033
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
gb|CB653367.1|CB653367 OSJNEc04F11.f OSJNEc Oryza sativa (j... 50 0.002
gb|CB653368.1|CB653368 OSJNEc04F11.r OSJNEc Oryza sativa (j... 50 0.002
dbj|AK071136.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 50 0.002
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_469828.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|XM_469830.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AU164729.1|AU164729 AU164729 Rice cDNA from immature lea... 42 0.37
gb|CB678982.1|CB678982 OSJNEf01P03.r OSJNEf Oryza sativa (j... 42 0.37
dbj|AK110898.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.37
gb|AC137634.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AACV01006392.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01013183.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.37
dbj|AP005913.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
dbj|AP003508.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 42 0.37
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
>dbj|AK068362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145L16, full
insert sequence
Length = 1546
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Plus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 1006 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 1065
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 1066 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 1125
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 1126 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 1185
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 1186 gttcgagcagggcctcaacgccaggc 1211
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 868 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 927
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 928 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 984
>gb|AACV01002743.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002743, whole
genome shotgun sequence
Length = 57696
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Plus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 34577 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 34636
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 34637 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 34696
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 34697 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 34756
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 34757 gttcgagcagggcctcaacgccaggc 34782
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 34439 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 34498
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 34499 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 34555
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 37525880 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 37525821
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 37525820 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 37525761
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 37525760 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 37525701
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 37525700 gttcgagcagggcctcaacgccaggc 37525675
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 37526018 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 37525959
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 37525958 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 37525902
>ref|NM_190739.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1422
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Plus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 981 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 1040
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 1041 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 1100
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 1101 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 1160
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 1161 gttcgagcagggcctcaacgccaggc 1186
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 843 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 902
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 903 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 959
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 11973263 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 11973204
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 11973203 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 11973144
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 11973143 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 11973084
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 11973083 gttcgagcagggcctcaacgccaggc 11973058
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 11973401 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 11973342
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 11973341 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 11973285
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0505D12
Length = 146951
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 39747 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 39688
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 39687 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 39628
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 39627 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 39568
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 39567 gttcgagcagggcctcaacgccaggc 39542
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 39885 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 39826
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 39825 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 39769
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 11682331 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 11682272
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 11682271 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 11682212
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 11682211 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 11682152
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 11682151 gttcgagcagggcctcaacgccaggc 11682126
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 11682469 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 11682410
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 11682409 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 11682353
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 36884052 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 36883993
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 36883992 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 36883933
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 36883932 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 36883873
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 36883872 gttcgagcagggcctcaacgccaggc 36883847
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 36884190 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 36884131
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 36884130 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 36884074
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 147 bits (74), Expect = 9e-033
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| | ||||||| ||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct: 37445210 cgggttgccgggaggcttcaaggagcgcgtcaacggccgcggagtcgtctgccgaggctg 37445151
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
||| || || || | | |||||||| | ||| || || ||||| ||||| ||||||||
Sbjct: 37445150 ggtaccacaggtcaagttcttggctcacgcatcggtcggcgggttcctgacgcacgccgg 37445091
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||||||||||||||||| |||||| || ||||||| | |||||||| ||||||||||
Sbjct: 37445090 ctggaactccatcgccgagggcctcgcgaacggcgtcaggctggtgctgctgccgctgat 37445031
Query: 329 gttcgatcagggcctcaacgccaggc 354
|||||| |||||||||||||||||||
Sbjct: 37445030 gttcgagcagggcctcaacgccaggc 37445005
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 2 ctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaac 61
||||||||| |||||||| ||||||||||||| ||||||||| || ||||| || |
Sbjct: 37445348 ctccgtcgtctacgcggcgttcggcagcgaggtgaagctgacagccgaacagctgcagag 37445289
Query: 62 aattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
||| ||||| ||| | ||||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 37445288 aatcgcgctcggtcttgaggcatccgagctgccgttcatctgggcattcagggcgcc 37445232
>gb|CB653367.1|CB653367 OSJNEc04F11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04F11 5', mRNA sequence
Length = 756
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 582 gctccgtcgtgtacgtggccttcggcagc 610
>gb|CB653368.1|CB653368 OSJNEc04F11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04F11 3', mRNA sequence
Length = 773
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 704 gctccgtcgtgtacgtggccttcggcagc 676
>dbj|AK071136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078E19, full
insert sequence
Length = 1580
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 857 gctccgtcgtgtacgtggccttcggcagc 885
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
genomic sequence, complete sequence
Length = 168759
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 116024 gctccgtcgtgtacgtggccttcggcagc 115996
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 104695 gctccgtcgtgtacgtggccttcggcagc 104723
>gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007956, whole
genome shotgun sequence
Length = 44568
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 2171 gctccgtcgtgtacgtggccttcggcagc 2199
>ref|XM_469828.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1389
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 827 gctccgtcgtgtacgtggccttcggcagc 855
>ref|XM_469830.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1632
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 840 gctccgtcgtgtacgtggccttcggcagc 868
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 170776 gctccgtcgtgtacgtggccttcggcagc 170748
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 159447 gctccgtcgtgtacgtggccttcggcagc 159475
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 4624721 gctccgtcgtgtacgtggccttcggcagc 4624749
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 31890884 gctccgtcgtgtacgtggccttcggcagc 31890912
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 10346325 tccggcctgccgttcctctgg 10346305
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 31081892 gctccgtcgtgtacgtggccttcggcagc 31081864
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 31070563 gctccgtcgtgtacgtggccttcggcagc 31070591
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 10086963 tccggcctgccgttcctctgg 10086943
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 30991369 gctccgtcgtgtacgtggccttcggcagc 30991341
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| |||||||||||||
Sbjct: 30980040 gctccgtcgtgtacgtggccttcggcagc 30980068
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 10088842 tccggcctgccgttcctctgg 10088822
>gb|AU164729.1|AU164729 AU164729 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61018, mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 157 tccggcctgccgttcctctgg 137
>gb|CB678982.1|CB678982 OSJNEf01P03.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01P03 3', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 531 acccacgccggctggaactcc 511
>dbj|AK110898.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A08, full
insert sequence
Length = 1567
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 470 tccggcctgccgttcctctgg 450
>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0078C05, complete sequence
Length = 122116
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 34463 tccggcctgccgttcctctgg 34443
>gb|AACV01006392.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006392, whole
genome shotgun sequence
Length = 42041
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 22227 tccggcctgccgttcctctgg 22247
>gb|AACV01013183.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013183, whole
genome shotgun sequence
Length = 21587
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 16665 acccacgccggctggaactcc 16685
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 15077 acccacgccggctggaactcc 15097
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 121577 acccacgccggctggaactcc 121557
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 119989 acccacgccggctggaactcc 119969
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0005A05
Length = 162520
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 24727 acccacgccggctggaactcc 24707
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 23139 acccacgccggctggaactcc 23119
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0470C02
Length = 158849
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 77678 acccacgccggctggaactcc 77658
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 76090 acccacgccggctggaactcc 76070
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 1432779 tccggcctgccgttcctctgg 1432759
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4267993 acccacgccggctggaactcc 4267973
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4266405 acccacgccggctggaactcc 4266385
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 10153963 tccggcctgccgttcctctgg 10153943
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4267993 acccacgccggctggaactcc 4267973
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4266405 acccacgccggctggaactcc 4266385
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4429997 acccacgccggctggaactcc 4429977
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 258 acccacgccggctggaactcc 278
|||||||||||||||||||||
Sbjct: 4428409 acccacgccggctggaactcc 4428389
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 729,869
Number of Sequences: 438736
Number of extensions: 729869
Number of successful extensions: 3625
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 163
length of query: 663
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 642
effective length of database: 2,791,206,460
effective search space: 1791954547320
effective search space used: 1791954547320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)