BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA... 638 e-180
gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-... 634 e-179
ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA 632 e-178
gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS ... 434 e-119
gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-... 430 e-118
ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA 430 e-118
dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA... 426 e-116
dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA... 357 1e-095
gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Ory... 325 3e-086
dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA... 311 5e-082
gb|C72923.1|C72923 C72923 Rice panicle at flowering stage O... 303 1e-079
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 258 7e-066
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 258 7e-066
gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) c... 258 7e-066
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 258 7e-066
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 258 7e-066
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 258 7e-066
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 258 7e-066
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 242 4e-061
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 242 4e-061
gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) c... 242 4e-061
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 242 4e-061
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 242 4e-061
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 242 4e-061
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 242 4e-061
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 242 4e-061
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 242 4e-061
dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA... 212 3e-052
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 212 3e-052
gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) c... 212 3e-052
ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA 212 3e-052
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 212 3e-052
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box pro... 212 3e-052
emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein 168 5e-039
gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library O... 157 2e-035
gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonic... 157 2e-035
dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) ... 157 2e-035
gb|AC105732.3| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-... 157 2e-035
gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA 157 2e-035
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 157 2e-035
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 157 2e-035
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|AU068508.1|AU068508 AU068508 Rice callus Oryza sativa (j... 149 4e-033
gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (j... 149 4e-033
gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (j... 149 4e-033
gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (j... 149 4e-033
gb|CF332154.1|CF332154 NACL--08-I21.g1 Rice callus plasmid ... 149 4e-033
gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing ... 149 4e-033
gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing ... 149 4e-033
dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA... 149 4e-033
gb|AY332477.1| Oryza sativa (japonica cultivar-group) MADS ... 149 4e-033
gb|AY345224.1| Oryza sativa (japonica cultivar-group) trans... 149 4e-033
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 149 4e-033
gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-... 149 4e-033
gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) c... 149 4e-033
ref|NM_197541.1| Oryza sativa (japonica cultivar-group) put... 149 4e-033
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 149 4e-033
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 147 2e-032
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 147 2e-032
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 147 2e-032
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 147 2e-032
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
gb|AY250075.1| Oryza sativa (japonica cultivar-group) MADS2... 145 7e-032
gb|AQ271415.1|AQ271415 nbxb0025B08f CUGI Rice BAC Library O... 143 3e-031
gb|AQ330858.1|AQ330858 nbxb0048E10f CUGI Rice BAC Library O... 143 3e-031
gb|AQ575051.1|AQ575051 nbxb0086L17r CUGI Rice BAC Library O... 143 3e-031
gb|AU225127.1|AU225127 AU225127 Oryza sativa Koshihikari pi... 143 3e-031
gb|AU225854.1|AU225854 AU225854 Oryza sativa Koshihikari pi... 143 3e-031
gb|U78890.1|OSU78890 Oryza sativa MADS box protein (OsMADS5... 143 3e-031
dbj|AK064184.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
gb|AACV01013077.1| Oryza sativa (japonica cultivar-group) c... 143 3e-031
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 143 3e-031
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 143 3e-031
ref|NM_185637.2| Oryza sativa (japonica cultivar-group), mRNA 143 3e-031
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 143 3e-031
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 143 3e-031
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 143 3e-031
dbj|AB003324.1| Oryza sativa (japonica cultivar-group) mRNA... 139 4e-030
dbj|AK100227.1| Oryza sativa (japonica cultivar-group) cDNA... 139 4e-030
gb|AY551922.1| Oryza sativa (japonica cultivar-group) MADS-... 139 4e-030
gb|AY551926.1| Oryza sativa (japonica cultivar-group) MADS-... 139 4e-030
ref|XM_469790.1| Oryza sativa (japonica cultivar-group), mRNA 139 4e-030
gb|AY551917.1| Oryza sativa (japonica cultivar-group) MADS-... 137 2e-029
gb|D15657.2|D15657 RICC1032A Rice callus Oryza sativa (japo... 135 7e-029
gb|CF315263.1|CF315263 HD--04-B23.b1 OsHDAC1-overexpressing... 135 7e-029
gb|U78892.1|OSU78892 Oryza sativa MADS box protein (OsMADS8... 133 3e-028
dbj|AK072867.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-028
dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-028
gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-... 133 3e-028
gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) c... 133 3e-028
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 133 3e-028
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
ref|NM_188300.1| Oryza sativa (japonica cultivar-group), p... 133 3e-028
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 133 3e-028
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 133 3e-028
dbj|AP003105.2| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|AU078632.1|AU078632 AU078632 Rice callus Oryza sativa (j... 129 4e-027
gb|CF297258.1|CF297258 30DGS--07-P17.b1 Rice leaf plasmid c... 127 2e-026
dbj|AB003328.1| Oryza sativa (japonica cultivar-group) mRNA... 127 2e-026
dbj|AK067641.1| Oryza sativa (japonica cultivar-group) cDNA... 127 2e-026
dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA... 127 2e-026
dbj|AK104921.1| Oryza sativa (japonica cultivar-group) cDNA... 127 2e-026
gb|AC098695.2| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
gb|AY551915.1| Oryza sativa (japonica cultivar-group) MADS-... 127 2e-026
gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-... 127 2e-026
gb|AACV01005781.1| Oryza sativa (japonica cultivar-group) c... 127 2e-026
gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) c... 127 2e-026
ref|XM_473638.1| Oryza sativa (japonica cultivar-group), p... 127 2e-026
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 127 2e-026
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 127 2e-026
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromoso... 127 2e-026
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 127 2e-026
gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (jap... 123 2e-025
gb|CF294135.1|CF294135 30DGS--03-I23.g1 Rice leaf plasmid c... 123 2e-025
gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flow... 123 2e-025
gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6... 123 2e-025
dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA... 123 2e-025
gb|AY332476.1| Oryza sativa (japonica cultivar-group) MADS ... 123 2e-025
dbj|AP004178.3| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) c... 123 2e-025
ref|XM_468584.1| Oryza sativa (japonica cultivar-group), p... 123 2e-025
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 123 2e-025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|CV721444.1|CV721444 YBH--04-C11.b1 Rice before heading y... 111 9e-022
gb|AQ872080.1|AQ872080 nbeb0046F11f CUGI Rice BAC Library (... 109 4e-021
gb|D46933.1|D46933 RICS11905A Rice green shoot Oryza sativa... 105 6e-020
gb|AU068577.1|AU068577 AU068577 Rice callus Oryza sativa (j... 103 2e-019
emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-gro... 101 9e-019
dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA... 101 9e-019
gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS ... 101 9e-019
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 101 9e-019
emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC O... 101 9e-019
emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B... 101 9e-019
gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-... 101 9e-019
ref|NT_107159.1| Oryza sativa (japonica cultivar-group) 101 9e-019
gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) c... 101 9e-019
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|CV720574.1|CV720574 YBH--01-B14.b1 Rice before heading y... 96 6e-017
gb|CV721367.1|CV721367 YBH--03-N20.b1 Rice before heading y... 96 6e-017
dbj|AP006720.1| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
dbj|AP004049.2| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
gb|AACV01003159.1| Oryza sativa (japonica cultivar-group) c... 96 6e-017
ref|XM_463804.1| Oryza sativa (japonica cultivar-group), mRNA 96 6e-017
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 96 6e-017
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 96 6e-017
gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda ph... 94 2e-016
dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 94 2e-016
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA... 94 2e-016
gb|CV733039.1|CV733039 FLO--07-M12.b1 Rice flower lambda ph... 92 9e-016
gb|AC090974.1|AC090974 Oryza sativa (japonica cultivar-grou... 92 9e-016
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 92 9e-016
dbj|AK070894.1| Oryza sativa (japonica cultivar-group) cDNA... 92 9e-016
dbj|AK070958.1| Oryza sativa (japonica cultivar-group) cDNA... 92 9e-016
gb|AY177693.1| Oryza sativa (japonica cultivar-group) trans... 92 9e-016
gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJN... 92 9e-016
gb|AY551913.1| Oryza sativa (japonica cultivar-group) MADS-... 92 9e-016
gb|AY551924.1| Oryza sativa (japonica cultivar-group) MADS-... 92 9e-016
gb|AACV01002803.1| Oryza sativa (japonica cultivar-group) c... 92 9e-016
gb|AACV01002820.1| Oryza sativa (japonica cultivar-group) c... 92 9e-016
ref|XM_463532.1| Oryza sativa (japonica cultivar-group), p... 92 9e-016
ref|XM_463559.1| Oryza sativa (japonica cultivar-group), p... 92 9e-016
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 92 9e-016
dbj|AP003561.2| Oryza sativa (japonica cultivar-group) geno... 92 9e-016
dbj|AP003379.2| Oryza sativa (japonica cultivar-group) geno... 92 9e-016
dbj|AP003346.4| Oryza sativa (japonica cultivar-group) geno... 92 9e-016
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 92 9e-016
gb|CB652556.1|CB652556 OSJNEc02K24.f OSJNEc Oryza sativa (j... 90 3e-015
gb|CF306783.1|CF306783 HDA1--04-N10.g1 OsHDAC1-overexpressi... 90 3e-015
gb|CF322477.1|CF322477 HDN--01-C18.g1 OsHDAC1-overexpressin... 90 3e-015
gb|CF325684.1|CF325684 JMT1--03-O10.g1 AtJMT-overexpressing... 90 3e-015
dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA... 90 3e-015
dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
dbj|AP004159.3| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|AACV01005456.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
ref|XM_467915.1| Oryza sativa (japonica cultivar-group), mRNA 90 3e-015
dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1... 90 3e-015
gb|AY177701.1| Oryza sativa (japonica cultivar-group) trans... 86 5e-014
ref|XM_483489.1| Oryza sativa (japonica cultivar-group), mRNA 86 5e-014
gb|C74765.1|C74765 C74765 Rice cDNA from immature leaf incl... 84 2e-013
gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) c... 82 8e-013
gb|C26796.1|C26796 C26796 Rice callus cDNA Oryza sativa (ja... 78 1e-011
dbj|AK100233.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 78 1e-011
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 78 1e-011
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|C91691.1|C91691 C91691 Rice panicle shorter than 3cm Ory... 76 5e-011
gb|CB666400.1|CB666400 OSJNEd13E17.f OSJNEd Oryza sativa (j... 76 5e-011
gb|CB682181.1|CB682181 OSJNEf09D09.f OSJNEf Oryza sativa (j... 76 5e-011
gb|CF309429.1|CF309429 ABF--03-J22.g1 ABF3-overexpressing t... 76 5e-011
gb|CF327296.1|CF327296 NACL--01-L16.g1 Rice callus plasmid ... 76 5e-011
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 76 5e-011
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 76 5e-011
gb|AY224482.1| Oryza sativa (japonica cultivar-group) isola... 76 5e-011
gb|AY177702.1| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
gb|AY345221.1| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
gb|AY345222.1| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
gb|AC125471.3| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
dbj|AP004888.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AACV01005341.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
gb|AACV01006007.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
gb|AACV01018778.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|XM_467621.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-011
ref|XM_483124.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-011
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 76 5e-011
emb|AJ536158.1|OSA536158 Oryza sativa (japonica cultivar-gr... 76 5e-011
gb|D47632.1|D47632 RICS13245A Rice green shoot Oryza sativa... 72 8e-010
gb|AU070008.1|AU070008 AU070008 Rice panicle shorter than 3... 72 8e-010
gb|AU108285.1|AU108285 AU108285 Rice panicle shorter than 3... 72 8e-010
gb|AU108288.1|AU108288 AU108288 Rice panicle shorter than 3... 72 8e-010
dbj|AP003908.1| Oryza sativa (japonica cultivar-group) chro... 72 8e-010
gb|AY177694.1| Oryza sativa (japonica cultivar-group) trans... 72 8e-010
gb|AY345220.1| Oryza sativa (japonica cultivar-group) trans... 72 8e-010
gb|AACV01018525.1| Oryza sativa (japonica cultivar-group) c... 72 8e-010
ref|XM_482530.1| Oryza sativa (japonica cultivar-group), mRNA 72 8e-010
dbj|AP003868.3| Oryza sativa (japonica cultivar-group) geno... 72 8e-010
gb|C98962.1|C98962 C98962 Rice panicle at flowering stage O... 70 3e-009
gb|AU101197.1|AU101197 AU101197 Rice panicle at flowering s... 70 3e-009
dbj|AK102927.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
dbj|AK111776.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
gb|AY177695.2| Oryza sativa (japonica cultivar-group) trans... 70 3e-009
dbj|AP005156.4| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
dbj|AP003736.3| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
dbj|AP005545.3| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01009230.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
gb|AACV01013335.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
gb|AACV01016495.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
ref|XM_471721.1| Oryza sativa (japonica cultivar-group), p... 70 3e-009
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 70 3e-009
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 70 3e-009
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromoso... 70 3e-009
gb|AU095354.1|AU095354 AU095354 Rice cDNA from immature lea... 66 5e-008
dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA... 66 5e-008
dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AP004566.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-... 66 5e-008
gb|AACV01017125.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-008
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 64 2e-007
dbj|AP003951.3| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|AACV01014097.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
dbj|AP003910.1| Oryza sativa (japonica cultivar-group) chro... 58 1e-005
gb|AQ866444.1|AQ866444 nbeb0028G05f CUGI Rice BAC Library (... 56 5e-005
gb|CF322128.1|CF322128 HD--13-J23.b1 OsHDAC1-overexpressing... 56 5e-005
gb|AY174093.1| Oryza sativa (japonica cultivar-group) MADS3... 56 5e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 56 5e-005
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|AACV01012869.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AACV01014754.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
ref|NM_185350.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
ref|XM_550468.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 56 5e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CB653612.1|CB653612 OSJNEc04N02.f OSJNEc Oryza sativa (j... 54 2e-004
gb|CV731070.1|CV731070 FLO--04-O21.g1 Rice flower lambda ph... 54 2e-004
dbj|AB003327.1| Oryza sativa (japonica cultivar-group) mRNA... 54 2e-004
dbj|AK066160.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK109522.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AP004836.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC O... 54 2e-004
gb|AACV01002956.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01003433.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01024966.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|XM_464283.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 54 2e-004
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 54 2e-004
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AY177697.1| Oryza sativa (japonica cultivar-group) trans... 52 8e-004
gb|AU075724.1|AU075724 AU075724 Rice panicle (between 3cm t... 50 0.003
gb|AU162282.1|AU162282 AU162282 Rice panicle (between 3cm t... 50 0.003
gb|AU165637.1|AU165637 AU165637 Rice panicle at flowering s... 50 0.003
gb|CZ168542.1|CZ168542 UCDRGT395_5.1 UCD RGT Rice Insertion... 48 0.012
gb|AU101219.1|AU101219 AU101219 Rice panicle at flowering s... 48 0.012
gb|CA755986.1|CA755986 BR030032000_PLATE_E04_29_033.ab1 OA ... 48 0.012
gb|CF315784.1|CF315784 HD--04-N08.b1 OsHDAC1-overexpressing... 48 0.012
dbj|AP004766.1| Oryza sativa (japonica cultivar-group) chro... 48 0.012
gb|AY177696.1| Oryza sativa (japonica cultivar-group) trans... 48 0.012
gb|AY551923.1| Oryza sativa (japonica cultivar-group) MADS-... 48 0.012
dbj|AP005607.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|AACV01004012.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
gb|AACV01004772.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
dbj|AP006161.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 48 0.012
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 48 0.012
gb|AU100638.1|AU100638 AU100638 Rice callus Oryza sativa (j... 46 0.047
gb|AU166049.1|AU166049 AU166049 Rice panicle shorter than 3... 46 0.047
gb|CB653645.1|CB653645 OSJNEc04O02.f OSJNEc Oryza sativa (j... 46 0.047
gb|CB679023.1|CB679023 OSJNEf02A14.r OSJNEf Oryza sativa (j... 46 0.047
gb|CF281557.1|CF281557 14ETL--08-K14.b1 Rice etiolated leaf... 46 0.047
gb|CF281558.1|CF281558 14ETL--08-K14.g1 Rice etiolated leaf... 46 0.047
gb|CF291013.1|CF291013 14ROOT--01-E11.b1 Rice root plasmid ... 46 0.047
gb|CF291014.1|CF291014 14ROOT--01-E11.g1 Rice root plasmid ... 46 0.047
gb|CF291022.1|CF291022 14ROOT--01-E15.g1 Rice root plasmid ... 46 0.047
gb|CF291820.1|CF291820 14ROOT--02-G15.b1 Rice root plasmid ... 46 0.047
gb|CF291821.1|CF291821 14ROOT--02-G15.g1 Rice root plasmid ... 46 0.047
gb|CF292623.1|CF292623 30DGS--01-I08.b1 Rice leaf plasmid c... 46 0.047
gb|CF292624.1|CF292624 30DGS--01-I08.g1 Rice leaf plasmid c... 46 0.047
gb|CF316819.1|CF316819 HD--06-E11.b1 OsHDAC1-overexpressing... 46 0.047
gb|CF332626.1|CF332626 JMT--01-D09.g1 AtJMT-overexpressing ... 46 0.047
gb|CF333746.1|CF333746 JMT--02-M04.b1 AtJMT-overexpressing ... 46 0.047
gb|CF333747.1|CF333747 JMT--02-M04.g1 AtJMT-overexpressing ... 46 0.047
gb|CF334822.1|CF334822 JMT--04-E02.g1 AtJMT-overexpressing ... 46 0.047
gb|CF335003.1|CF335003 JMT--04-I04.b1 AtJMT-overexpressing ... 46 0.047
gb|CF335116.1|CF335116 JMT--04-K18.b1 AtJMT-overexpressing ... 46 0.047
gb|CF339891.1|CF339891 RCL1--06-E11.g1 Regenerated callus l... 46 0.047
gb|CV723882.1|CV723882 root--05-B08.g1 Rice root lambda pha... 46 0.047
dbj|AP004322.1| Oryza sativa (japonica cultivar-group) chro... 46 0.047
dbj|AK061899.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.047
dbj|AK111859.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.047
gb|AY345223.2| Oryza sativa (japonica cultivar-group) trans... 46 0.047
dbj|AP004741.3| Oryza sativa (japonica cultivar-group) geno... 46 0.047
gb|AACV01013305.1| Oryza sativa (japonica cultivar-group) c... 46 0.047
ref|XM_465188.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.047
gb|AU181656.1|AU181656 AU181656 Rice callus (2001) Oryza sa... 44 0.18
gb|CB646565.1|CB646565 OSJNEb09B23.f OSJNEb Oryza sativa (j... 44 0.18
gb|CB646573.1|CB646573 OSJNEb09C03.f OSJNEb Oryza sativa (j... 44 0.18
gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, comple... 44 0.18
dbj|AK063071.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK073369.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK099639.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK107324.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK109795.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK120437.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AP005323.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP005844.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AF161269.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC O... 44 0.18
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 44 0.18
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 44 0.18
gb|AACV01000498.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01005260.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01008280.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01008285.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01011288.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01014099.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01023672.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|XM_467383.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|XM_470450.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|XM_470459.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 44 0.18
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401194.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
emb|CS137150.1| Sequence 121 from Patent WO2005047516 44 0.18
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 44 0.18
gb|AC120506.5| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA for MADS box-like
protein, complete cds, clone:E31864
Length = 1289
Score = 638 bits (322), Expect = e-180
Identities = 472/522 (90%)
Strand = Plus / Minus
Query: 689 agttccttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctca 748
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 639 agttccttctgcagagccttgttctcctcctgcagtgacctctcctttttctgcagctcg 580
Query: 749 gaaattgactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctcc 808
||||| ||||| |||||||||||||||||||||| | |||||||||| ||| ||||||
Sbjct: 579 gaaatggactcaagcataaggtggctctttcttgatattatgtgcttcaatgaactctcc 520
Query: 809 agctgctgctctagttgttggagctcttttggattcaaagactctagatcctctcccatc 868
|||||||||||||| |||||||| ||||| |||||| || |||||||||||||||||
Sbjct: 519 agctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatg 460
Query: 869 aggtgcttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtgg 928
||||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| |||
Sbjct: 459 aggtgtttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatgg 400
Query: 929 caccaatttccctcactttcagattcagctgaaataagagccttttcagcataggaatat 988
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 399 caccaatttccctcactctcggattcagctgaaataagagccttttcagcatatgaatag 340
Query: 989 cgctcataacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttg 1048
|||||||||||||| || ||||||||||| | |||||| | |||||||||||||||||||
Sbjct: 339 cgctcataacgttcaaggattttgtccatcctggagtcagtggcgtactcgtagagcttg 280
Query: 1049 cccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgc 1108
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgc 220
Query: 1109 gccttcttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttc 1168
||||||||||||| || |||| | ||||||||| |||||||||| ||| |||||||||
Sbjct: 219 gccttcttcagcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttc 160
Query: 1169 tctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||||||||||||||||||||| || ||||||||| |||||
Sbjct: 159 tctatccgcttcagctgcaccttcccccgccccatcctcgcc 118
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 921 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 878
>gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS215
mRNA, complete cds
Length = 1136
Score = 634 bits (320), Expect = e-179
Identities = 467/516 (90%)
Strand = Plus / Minus
Query: 689 agttccttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctca 748
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 682 agttccttctgcagagccttgttctcctcctgcagtgacctctcctttttctgcagctcg 623
Query: 749 gaaattgactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctcc 808
||||| ||||| |||||||||||||||||||||| | |||||||||| ||| ||||||
Sbjct: 622 gaaatggactcaagcataaggtggctctttcttgatattatgtgcttcaatgaactctcc 563
Query: 809 agctgctgctctagttgttggagctcttttggattcaaagactctagatcctctcccatc 868
|||||||||||||| |||||||| ||||| |||||| || |||||||||||||||||
Sbjct: 562 agctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatg 503
Query: 869 aggtgcttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtgg 928
||||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| |||
Sbjct: 502 aggtgtttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatgg 443
Query: 929 caccaatttccctcactttcagattcagctgaaataagagccttttcagcataggaatat 988
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 442 caccaatttccctcactctcggattcagctgaaataagagccttttcagcatatgaatag 383
Query: 989 cgctcataacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttg 1048
|||||||||||||| || ||||||||||| | |||||| | |||||||||||||||||||
Sbjct: 382 cgctcataacgttcaaggattttgtccatcctggagtcagtggcgtactcgtagagcttg 323
Query: 1049 cccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgc 1108
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgc 263
Query: 1109 gccttcttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttc 1168
||||||||||||| || |||| | ||||||||| |||||||||| ||| |||||||||
Sbjct: 262 gccttcttcagcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttc 203
Query: 1169 tctatccgcttcagctgcaccttgccgcgccccatc 1204
||||||||||||||||||||||| || |||||||||
Sbjct: 202 tctatccgcttcagctgcaccttcccccgccccatc 167
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 964 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 921
>ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 807
Score = 632 bits (319), Expect = e-178
Identities = 466/515 (90%)
Strand = Plus / Minus
Query: 689 agttccttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctca 748
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 515 agttccttctgcagagccttgttctcctcctgcagtgacctctcctttttctgcagctcg 456
Query: 749 gaaattgactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctcc 808
||||| ||||| |||||||||||||||||||||| | |||||||||| ||| ||||||
Sbjct: 455 gaaatggactcaagcataaggtggctctttcttgatattatgtgcttcaatgaactctcc 396
Query: 809 agctgctgctctagttgttggagctcttttggattcaaagactctagatcctctcccatc 868
|||||||||||||| |||||||| ||||| |||||| || |||||||||||||||||
Sbjct: 395 agctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatg 336
Query: 869 aggtgcttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtgg 928
||||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| |||
Sbjct: 335 aggtgtttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatgg 276
Query: 929 caccaatttccctcactttcagattcagctgaaataagagccttttcagcataggaatat 988
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 275 caccaatttccctcactctcggattcagctgaaataagagccttttcagcatatgaatag 216
Query: 989 cgctcataacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttg 1048
|||||||||||||| || ||||||||||| | |||||| | |||||||||||||||||||
Sbjct: 215 cgctcataacgttcaaggattttgtccatcctggagtcagtggcgtactcgtagagcttg 156
Query: 1049 cccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgc 1108
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgc 96
Query: 1109 gccttcttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttc 1168
||||||||||||| || |||| | ||||||||| |||||||||| ||| |||||||||
Sbjct: 95 gccttcttcagcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttc 36
Query: 1169 tctatccgcttcagctgcaccttgccgcgccccat 1203
||||||||||||||||||||||| || ||||||||
Sbjct: 35 tctatccgcttcagctgcaccttcccccgccccat 1
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 800 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 757
>gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS box protein (AGL10) mRNA,
complete cds
Length = 964
Score = 434 bits (219), Expect = e-119
Identities = 444/519 (85%)
Strand = Plus / Minus
Query: 689 agttccttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctca 748
||||| |||||||| |||| |||||||||||||||||| | |||||| || |||||
Sbjct: 603 agttctttctgtaggaccttattctcctcctgcagtgacttttccttccgttgaagctcg 544
Query: 749 gaaattgactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctcc 808
||| |||||| ||| || ||||||||||| |||||||| || |||| || | |||
Sbjct: 543 ttaatggactcgagcattagttggctctttctggatctgatatgtttcaacgaattttcc 484
Query: 809 agctgctgctctagttgttggagctcttttggattcaaagactctagatcctctcccatc 868
||||||||||| || || || |||||||| |||||||||| || ||||||||||||||
Sbjct: 483 agctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctcccatg 424
Query: 869 aggtgcttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtgg 928
|||||||| || ||| | ||||| ||||||| || |||||||||||||| |||||||||
Sbjct: 423 aggtgcttttgacatttctgtattgtctcaaccttagccttcagtttcctatattcgtgg 364
Query: 929 caccaatttccctcactttcagattcagctgaaataagagccttttcagcataggaatat 988
||||| || |||| | | |||||||||||||||||||| ||||||| |||||||| ||
Sbjct: 363 caccagttgccctgagtgtcagattcagctgaaataaggaccttttctgcataggagtag 304
Query: 989 cgctcataacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttg 1048
|||||||||||||| || ||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 303 cgctcataacgttcaaggattttgtccatacatgagtcggtggcgtactcgtagagcttg 244
Query: 1049 cccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgc 1108
||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| | |
Sbjct: 243 cccttggtggagaagatgatgagcgcgacctcggcgtcgcagagcacggagatctcattc 184
Query: 1109 gccttcttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttc 1168
|||||||| |||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct: 183 gccttcttgagcagccccgacctgcgcttggagaaggtcacctgccggttgatcttgttc 124
Query: 1169 tctatccgcttcagctgcaccttgccgcgccccatcttc 1207
|| ||||||||||||||||||||||| ||||||||||||
Sbjct: 123 tcgatccgcttcagctgcaccttgccccgccccatcttc 85
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 834 cctccttagccgttgatgtggctcagcatccatggtggcag 794
>gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS211
mRNA, complete cds
Length = 1109
Score = 430 bits (217), Expect = e-118
Identities = 439/513 (85%)
Strand = Plus / Minus
Query: 695 ttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctcagaaatt 754
|||||||| |||| |||||||||||||||||| | |||||| || ||||| |||
Sbjct: 610 ttctgtaggaccttattctcctcctgcagtgacttttccttccgttgaagctcgttaatg 551
Query: 755 gactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctccagctgc 814
|||||| ||| || ||||||||||| |||||||| || |||| || | |||||||||
Sbjct: 550 gactcgagcattagttggctctttctggatctgatatgtttcaacgaattttccagctgc 491
Query: 815 tgctctagttgttggagctcttttggattcaaagactctagatcctctcccatcaggtgc 874
||||| || || || |||||||| |||||||||| || |||||||||||||| ||||||
Sbjct: 490 tgctccagctgctgcagctctttgagattcaaagattcaagatcctctcccatgaggtgc 431
Query: 875 ttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcaccaa 934
|| || ||| | ||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 430 ttttgacatttctgtattgtctcaaccttagccttcagtttcctatattcgtggcaccag 371
Query: 935 tttccctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctca 994
|| |||| | | |||||||||||||||||||| ||||||| |||||||| || ||||||
Sbjct: 370 ttgccctgagtgtcagattcagctgaaataaggaccttttctgcataggagtagcgctca 311
Query: 995 taacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttgcccttg 1054
|||||||| || ||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 310 taacgttcaaggattttgtccatacatgagtcggtggcgtactcgtagagcttgcccttg 251
Query: 1055 ggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttc 1114
| |||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 250 gtggagaagatgatgagcgcgacctcggcgtcgcagagcacggagatctcattcgccttc 191
Query: 1115 ttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatc 1174
|| |||||||| || ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 190 ttgagcagccccgacctgcgcttggagaaggtcacctgccggttgatcttgttctcgatc 131
Query: 1175 cgcttcagctgcaccttgccgcgccccatcttc 1207
|||||||||||||||||||| ||||||||||||
Sbjct: 130 cgcttcagctgcaccttgccccgccccatcttc 98
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 868 cctccttagccgttgatgtggctcagcatccatggtggcag 828
>ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 813
Score = 430 bits (217), Expect = e-118
Identities = 439/513 (85%)
Strand = Plus / Minus
Query: 695 ttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctcagaaatt 754
|||||||| |||| |||||||||||||||||| | |||||| || ||||| |||
Sbjct: 532 ttctgtaggaccttattctcctcctgcagtgacttttccttccgttgaagctcgttaatg 473
Query: 755 gactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctccagctgc 814
|||||| ||| || ||||||||||| |||||||| || |||| || | |||||||||
Sbjct: 472 gactcgagcattagttggctctttctggatctgatatgtttcaacgaattttccagctgc 413
Query: 815 tgctctagttgttggagctcttttggattcaaagactctagatcctctcccatcaggtgc 874
||||| || || || |||||||| |||||||||| || |||||||||||||| ||||||
Sbjct: 412 tgctccagctgctgcagctctttgagattcaaagattcaagatcctctcccatgaggtgc 353
Query: 875 ttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcaccaa 934
|| || ||| | ||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 352 ttttgacatttctgtattgtctcaaccttagccttcagtttcctatattcgtggcaccag 293
Query: 935 tttccctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctca 994
|| |||| | | |||||||||||||||||||| ||||||| |||||||| || ||||||
Sbjct: 292 ttgccctgagtgtcagattcagctgaaataaggaccttttctgcataggagtagcgctca 233
Query: 995 taacgttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttgcccttg 1054
|||||||| || ||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 232 taacgttcaaggattttgtccatacatgagtcggtggcgtactcgtagagcttgcccttg 173
Query: 1055 ggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttc 1114
| |||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 172 gtggagaagatgatgagcgcgacctcggcgtcgcagagcacggagatctcattcgccttc 113
Query: 1115 ttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatc 1174
|| |||||||| || ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 112 ttgagcagccccgacctgcgcttggagaaggtcacctgccggttgatcttgttctcgatc 53
Query: 1175 cgcttcagctgcaccttgccgcgccccatcttc 1207
|||||||||||||||||||| ||||||||||||
Sbjct: 52 cgcttcagctgcaccttgccccgccccatcttc 20
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 790 cctccttagccgttgatgtggctcagcatccatggtggcag 750
>dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N01, full
insert sequence
Length = 1284
Score = 426 bits (215), Expect = e-116
Identities = 431/503 (85%)
Strand = Plus / Minus
Query: 705 ccttgttctcctcctgcagtgacctctccttcttctgtagctcagaaattgactcggcca 764
|||| |||||||||||||||||| | |||||| || ||||| ||| |||||| ||
Sbjct: 806 ccttattctcctcctgcagtgacttttccttccgttgaagctcgttaatggactcgagca 747
Query: 765 taaggtggctctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagtt 824
| || ||||||||||| |||||||| || |||| || | |||||||||||||| || |
Sbjct: 746 ttagttggctctttctggatctgatatgtttcaacgaattttccagctgctgctccagct 687
Query: 825 gttggagctcttttggattcaaagactctagatcctctcccatcaggtgcttgtggcatc 884
| || |||||||| |||||||||| || |||||||||||||| |||||||| || |||
Sbjct: 686 gctgcagctctttgagattcaaagattcaagatcctctcccatgaggtgcttttgacatt 627
Query: 885 tttgtatggtctcaattttggccttcagtttcctgtattcgtggcaccaatttccctcac 944
| ||||| ||||||| || |||||||||||||| |||||||||||||| || |||| |
Sbjct: 626 tctgtattgtctcaaccttagccttcagtttcctatattcgtggcaccagttgccctgag 567
Query: 945 tttcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttcta 1004
| |||||||||||||||||||| ||||||| |||||||| || |||||||||||||| |
Sbjct: 566 tgtcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaa 507
Query: 1005 gaattttgtccatgcgggagtcggaggcgtactcgtagagcttgcccttgggggagaaga 1064
| ||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 506 ggattttgtccatacatgagtcggtggcgtactcgtagagcttgcccttggtggagaaga 447
Query: 1065 cgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcc 1124
||||| |||||||||||||||||||| ||||||||||| | ||||||||| |||||||
Sbjct: 446 tgatgagcgcgacctcggcgtcgcagagcacggagatctcattcgccttcttgagcagcc 387
Query: 1125 cgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccgcttcagct 1184
| || ||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 386 ccgacctgcgcttggagaaggtcacctgccggttgatcttgttctcgatccgcttcagct 327
Query: 1185 gcaccttgccgcgccccatcttc 1207
|||||||||| ||||||||||||
Sbjct: 326 gcaccttgccccgccccatcttc 304
>dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K24, full
insert sequence
Length = 2563
Score = 357 bits (180), Expect = 1e-095
Identities = 249/272 (91%)
Strand = Plus / Minus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 447 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 388
Query: 999 gttctagaattttgtccatgcgggagtcggaggcgtactcgtagagcttgcccttggggg 1058
|||| || ||||||||||| | |||||| | |||||||||||||||||||||||||||||
Sbjct: 387 gttcaaggattttgtccatcctggagtcagtggcgtactcgtagagcttgcccttggggg 328
Query: 1059 agaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttca 1118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttca 268
Query: 1119 gcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccgct 1178
||| || |||| | ||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct: 267 gcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttctctatccgct 208
Query: 1179 tcagctgcaccttgccgcgccccatcttcgcc 1210
||||||||||||| || ||||||||| |||||
Sbjct: 207 tcagctgcaccttcccccgccccatcctcgcc 176
Score = 287 bits (145), Expect = 7e-075
Identities = 226/253 (89%)
Strand = Plus / Minus
Query: 689 agttccttctgtagagccttgttctcctcctgcagtgacctctccttcttctgtagctca 748
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2031 agttccttctgcagagccttgttctcctcctgcagtgacctctcctttttctgcagctcg 1972
Query: 749 gaaattgactcggccataaggtggctctttcttgatctgatgtgcttcagtgagctctcc 808
||||| ||||| |||||||||||||||||||||| | |||||||||| ||| ||||||
Sbjct: 1971 gaaatggactcaagcataaggtggctctttcttgatattatgtgcttcaatgaactctcc 1912
Query: 809 agctgctgctctagttgttggagctcttttggattcaaagactctagatcctctcccatc 868
|||||||||||||| |||||||| ||||| |||||| || |||||||||||||||||
Sbjct: 1911 agctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatg 1852
Query: 869 aggtgcttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtgg 928
||||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| |||
Sbjct: 1851 aggtgtttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatgg 1792
Query: 929 caccaatttccct 941
|||||||||||||
Sbjct: 1791 caccaatttccct 1779
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 2313 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 2270
>gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31864_1A, mRNA sequence
Length = 438
Score = 325 bits (164), Expect = 3e-086
Identities = 273/305 (89%), Gaps = 5/305 (1%)
Strand = Plus / Minus
Query: 911 agtttcctgtattcgtggcaccaattt--ccctcactttcagattcagctgaaa-taaga 967
|||| ||||||||| || |||||| || |||| |||||| ||||||||||||| |||||
Sbjct: 422 agttccctgtattcatgncaccaaattncccctaactttcngattcagctgaaaataaga 363
Query: 968 gccttttcagcataggaatatcgct-cataacgttcta-gaattttgtccatgcgggagt 1025
|||||||||||||| ||||| |||| |||||||||| | | ||||||||||| | |||||
Sbjct: 362 gccttttcagcatatgaatagcgcttcataacgttcaaaggattttgtccatcctggagt 303
Query: 1026 cggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgt 1085
| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 302 cagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctcggcgt 243
Query: 1086 cgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaagg 1145
|||||||||||||||||||||||||||||||||||| || |||| | ||||||||| |
Sbjct: 242 cgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttggagaacg 183
Query: 1146 tcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatct 1205
||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 182 tcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccccatcc 123
Query: 1206 tcgcc 1210
|||||
Sbjct: 122 tcgcc 118
>dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081C04, full
insert sequence
Length = 1784
Score = 311 bits (157), Expect = 5e-082
Identities = 235/261 (90%)
Strand = Plus / Minus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 561 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 502
Query: 1007 attttgtccatgcgggagtcggaggcgtactcgtagagcttgcccttgggggagaagacg 1066
||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct: 501 attttgtccatacatgagtcggtggcgtactcgtagagcttgcccttggtggagaagatg 442
Query: 1067 atgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccg 1126
|||| |||||||||||||||||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 441 atgagcgcgacctcggcgtcgcagagcacggagatctcattcgccttcttgagcagcccc 382
Query: 1127 ttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgc 1186
|| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 381 gacctgcgcttggagaaggtcacctgccggttgatcttgttctcgatccgcttcagctgc 322
Query: 1187 accttgccgcgccccatcttc 1207
|||||||| ||||||||||||
Sbjct: 321 accttgccccgccccatcttc 301
>gb|C72923.1|C72923 C72923 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2475_1A, mRNA sequence
Length = 400
Score = 303 bits (153), Expect = 1e-079
Identities = 272/309 (88%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 905 gccttcagtttcctgtattcgtggcaccaatttccctcactttcagattcagctgaaata 964
||||| |||| ||| ||||| ||||||||| |||||| | |||| ||||||||| ||||
Sbjct: 400 gccttaagttccctntattcatggcaccaaattcccttantttcggattcagcttaaatt 341
Query: 965 agagccttttcagcataggaatatcgct-cat-aacgttcta-gaattttgtccatgcgg 1021
||||||||||||||||| |||| |||| ||| ||||||| | | ||||||||||| | |
Sbjct: 340 agagccttttcagcatatgaatngcgcttcattaacgttcaaaggattttgtccatcctg 281
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 gagtcantggcgtactcgtagagcttgcccttgggggagaagacgattgcggcgacctcg 221
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
|||||||||||||||||||||||||||||||||||||||| || |||| | |||||||
Sbjct: 220 gcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttggag 161
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
|| |||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 160 aacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgcccc 101
Query: 1202 atcttcgcc 1210
||| |||||
Sbjct: 100 atcctcgcc 92
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1567_G09
Length = 121388
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30204 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 30263
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 30264 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 30323
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 30324 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 30383
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 30384 catcctcgcc 30393
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 27706 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 27765
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 27766 gttcaaggattttgtccat 27784
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 26059 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 26118
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 26119 tttgagattcagggattctagatcctctcccatgaggtg 26157
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 26307 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 26366
Query: 934 atttccct 941
||||||||
Sbjct: 26367 atttccct 26374
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 25464 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 25507
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 24514 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 24557
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0585H11
Length = 149371
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 78456 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 78515
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 78516 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 78575
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 78576 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 78635
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 78636 catcctcgcc 78645
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 75958 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 76017
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 76018 gttcaaggattttgtccat 76036
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 74311 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 74370
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 74371 tttgagattcagggattctagatcctctcccatgaggtg 74409
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 74559 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 74618
Query: 934 atttccct 941
||||||||
Sbjct: 74619 atttccct 74626
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 73716 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 73759
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 72766 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 72809
>gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015031, whole
genome shotgun sequence
Length = 13398
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 12157 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 12216
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 12217 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 12276
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 12277 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 12336
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 12337 catcctcgcc 12346
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 9659 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 9718
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 9719 gttcaaggattttgtccat 9737
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 8012 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 8071
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 8072 tttgagattcagggattctagatcctctcccatgaggtg 8110
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 8260 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 8319
Query: 934 atttccct 941
||||||||
Sbjct: 8320 atttccct 8327
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7417 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 7460
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 6467 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 6510
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 470229 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 470288
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 470289 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 470348
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 470349 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 470408
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 470409 catcctcgcc 470418
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 467731 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 467790
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 467791 gttcaaggattttgtccat 467809
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 466084 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 466143
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 466144 tttgagattcagggattctagatcctctcccatgaggtg 466182
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 466332 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 466391
Query: 934 atttccct 941
||||||||
Sbjct: 466392 atttccct 466399
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 465489 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 465532
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 464539 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 464582
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 462863 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 462922
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 462923 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 462982
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 462983 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 463042
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 463043 catcctcgcc 463052
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 460365 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 460424
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 460425 gttcaaggattttgtccat 460443
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 458718 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 458777
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 458778 tttgagattcagggattctagatcctctcccatgaggtg 458816
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 458966 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 459025
Query: 934 atttccct 941
||||||||
Sbjct: 459026 atttccct 459033
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 458123 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 458166
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 457173 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 457216
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 462863 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 462922
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 462923 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 462982
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 462983 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 463042
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 463043 catcctcgcc 463052
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 23626896 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 23626837
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 23626836 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 23626777
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 23626776 tgtttatcttgttctcgatccgccgcagctgcacc 23626742
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 460365 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 460424
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 460425 gttcaaggattttgtccat 460443
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 458718 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 458777
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 458778 tttgagattcagggattctagatcctctcccatgaggtg 458816
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 458966 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 459025
Query: 934 atttccct 941
||||||||
Sbjct: 459026 atttccct 459033
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 458123 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 458166
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 457173 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 457216
Score = 69.9 bits (35), Expect = 3e-009
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 1075 gacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcg 1134
||||||||| ||| |||| ||| || ||||| ||||||||| | ||| || ||| | |
Sbjct: 20242915 gacctcggcatcgtagagcacgacgagctcgtacgccttcttgaccagaccattcttgtg 20242974
Query: 1135 cttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcacc 1189
|||||| ||||||||||| | ||| ||||||||||| ||||||||||||| ||||
Sbjct: 20242975 cttggaaaaggtcacctgtctgttgatcttgttctcgatccgcttcagctccacc 20243029
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 258 bits (130), Expect = 7e-066
Identities = 175/190 (92%)
Strand = Plus / Plus
Query: 1021 ggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctc 1080
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476292 ggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctc 476351
Query: 1081 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttgga 1140
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 476352 ggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttgga 476411
Query: 1141 gaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccc 1200
||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 476412 gaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccc 476471
Query: 1201 catcttcgcc 1210
|||| |||||
Sbjct: 476472 catcctcgcc 476481
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 24735153 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 24735094
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24735093 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 24735034
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 24735033 tgtttatcttgttctcgatccgccgcagctgcacc 24734999
Score = 109 bits (55), Expect = 4e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 473794 cctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataac 473853
Query: 999 gttctagaattttgtccat 1017
|||| || |||||||||||
Sbjct: 473854 gttcaaggattttgtccat 473872
Score = 101 bits (51), Expect = 9e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
|||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| ||
Sbjct: 472147 ctttcttgatattatgtgcttcaatgaactctccagctgctgctctagctgttggagttc 472206
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtg 873
||| |||||| || ||||||||||||||||| |||||
Sbjct: 472207 tttgagattcagggattctagatcctctcccatgaggtg 472245
Score = 87.7 bits (44), Expect = 1e-014
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct: 472395 cttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcacca 472454
Query: 934 atttccct 941
||||||||
Sbjct: 472455 atttccct 472462
Score = 79.8 bits (40), Expect = 3e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 691 ttccttctgtagagccttgttctcctcctgcagtgacctctcct 734
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 471552 ttccttctgcagagccttgttctcctcctgcagtgacctctcct 471595
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 395 ttgaggtggctcagcatccatggcggcagacctgcgatgcggag 438
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 470602 ttgaggtggctcagcatccatggcggaagacctccgatgcggag 470645
Score = 69.9 bits (35), Expect = 3e-009
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 1075 gacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcg 1134
||||||||| ||| |||| ||| || ||||| ||||||||| | ||| || ||| | |
Sbjct: 21379545 gacctcggcatcgtagagcacgacgagctcgtacgccttcttgaccagaccattcttgtg 21379604
Query: 1135 cttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcacc 1189
|||||| ||||||||||| | ||| ||||||||||| ||||||||||||| ||||
Sbjct: 21379605 cttggaaaaggtcacctgtctgttgatcttgttctcgatccgcttcagctccacc 21379659
>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete
sequence
Length = 128294
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 57318 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 57377
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 57378 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 57437
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 57438 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 57497
Query: 1202 atcttc 1207
||||||
Sbjct: 57498 atcttc 57503
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 70825 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 70884
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 70885 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 70944
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 70945 gctgaagcaccaccttgcctcgccccatct 70974
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 51989 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 52048
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 52049 attttgtccat 52059
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 49601 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 49660
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 49661 atgaggtgc 49669
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 49770 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 49816
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 48315 cctccttagccgttgatgtggctcagcatccatggtggcag 48355
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
sequence
Length = 157970
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 13774 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 13715
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 13714 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 13655
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 13654 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 13595
Query: 1202 atcttc 1207
||||||
Sbjct: 13594 atcttc 13589
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 267 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 208
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 207 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 148
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 147 gctgaagcaccaccttgcctcgccccatct 118
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 19103 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 19044
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 19043 attttgtccat 19033
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 21490 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 21431
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 21430 atgaggtgc 21422
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 21321 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 21275
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 22776 cctccttagccgttgatgtggctcagcatccatggtggcag 22736
>gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007934, whole
genome shotgun sequence
Length = 56956
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 13220 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 13279
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 13280 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 13339
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 13340 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 13399
Query: 1202 atcttc 1207
||||||
Sbjct: 13400 atcttc 13405
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 26728 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 26787
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 26788 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 26847
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 26848 gctgaagcaccaccttgcctcgccccatct 26877
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 7891 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 7950
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 7951 attttgtccat 7961
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 5503 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 5562
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 5563 atgaggtgc 5571
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 5672 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 5718
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 4217 cctccttagccgttgatgtggctcagcatccatggtggcag 4257
>ref|NT_107186.1| Oryza sativa (japonica cultivar-group)
Length = 215173
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 144197 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 144256
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 144257 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 144316
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 144317 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 144376
Query: 1202 atcttc 1207
||||||
Sbjct: 144377 atcttc 144382
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 157704 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 157763
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 157764 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 157823
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 157824 gctgaagcaccaccttgcctcgccccatct 157853
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 138868 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 138927
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 138928 attttgtccat 138938
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 136481 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 136540
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 136541 atgaggtgc 136549
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 136650 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 136696
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 135195 cctccttagccgttgatgtggctcagcatccatggtggcag 135235
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 4402212 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 4402271
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 4402272 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 4402331
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 4402332 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 4402391
Query: 1202 atcttc 1207
||||||
Sbjct: 4402392 atcttc 4402397
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 4415720 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 4415779
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 4415780 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 4415839
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 4415840 gctgaagcaccaccttgcctcgccccatct 4415869
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 4396883 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 4396942
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 4396943 attttgtccat 4396953
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 4394495 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 4394554
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 4394555 atgaggtgc 4394563
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 4394664 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 4394710
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 4393209 cctccttagccgttgatgtggctcagcatccatggtggcag 4393249
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 582 aggaagaagacgatgagcttgt 603
||||||||||||||||||||||
Sbjct: 9485393 aggaagaagacgatgagcttgt 9485372
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 481 cgccgccgcagccacctcttcg 502
||||||||||||||||||||||
Sbjct: 9435154 cgccgccgcagccacctcttcg 9435133
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 31668375 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 31668434
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 31668435 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 31668494
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 31668495 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 31668554
Query: 1202 atcttc 1207
||||||
Sbjct: 31668555 atcttc 31668560
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 6255561 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 6255620
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 6255621 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 6255680
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 6255681 cttcagctccaccttccccctccccatcttc 6255711
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 31681883 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 31681942
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 31681943 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 31682002
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 31682003 gctgaagcaccaccttgcctcgccccatct 31682032
Score = 127 bits (64), Expect = 2e-026
Identities = 145/172 (84%)
Strand = Plus / Plus
Query: 1037 tcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacg 1096
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1475575 tcgtagagcttgccgcgcggggagaagacgatgagcgcgacctcggcgtcgcagaggacg 1475634
Query: 1097 gagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|||| |||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||
Sbjct: 1475635 gagagctcgaaggccttcttgagcaggccgttgcggcgcttggagaaggtgacctggcgg 1475694
Query: 1157 tttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcg 1208
| | ||||||||||||||||| |||| ||| || ||| |||||||||
Sbjct: 1475695 ctcgtggggttctctatccgcttcatctgcgtcttcccccgcaccatcttcg 1475746
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 31663046 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 31663105
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 31663106 attttgtccat 31663116
Score = 75.8 bits (38), Expect = 5e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||||||||| ||| ||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 4678090 agagcttgccggtggcggagaagacgacgagcccgacctcggcgtcgcagaggatggaga 4678149
Query: 1101 tctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
||| | |||||||| | |||||| ||| ||||| ||||||||||||||||
Sbjct: 4678150 gctcctcggccttcttgaacagccccctcctccgcttcgagaaggtcacctgcc 4678203
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 31660658 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 31660717
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 31660718 atgaggtgc 31660726
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 31660827 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 31660873
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 31659372 cctccttagccgttgatgtggctcagcatccatggtggcag 31659412
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 582 aggaagaagacgatgagcttgt 603
||||||||||||||||||||||
Sbjct: 36751556 aggaagaagacgatgagcttgt 36751535
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 481 cgccgccgcagccacctcttcg 502
||||||||||||||||||||||
Sbjct: 36701317 cgccgccgcagccacctcttcg 36701296
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 30840040 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 30840099
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 30840100 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 30840159
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 30840160 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 30840219
Query: 1202 atcttc 1207
||||||
Sbjct: 30840220 atcttc 30840225
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 6028622 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 6028681
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 6028682 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 6028741
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 6028742 cttcagctccaccttccccctccccatcttc 6028772
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 30853547 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 30853606
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 30853607 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 30853666
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 30853667 gctgaagcaccaccttgcctcgccccatct 30853696
Score = 127 bits (64), Expect = 2e-026
Identities = 145/172 (84%)
Strand = Plus / Plus
Query: 1037 tcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacg 1096
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1279473 tcgtagagcttgccgcgcggggagaagacgatgagcgcgacctcggcgtcgcagaggacg 1279532
Query: 1097 gagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|||| |||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||
Sbjct: 1279533 gagagctcgaaggccttcttgagcaggccgttgcggcgcttggagaaggtgacctggcgg 1279592
Query: 1157 tttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcg 1208
| | ||||||||||||||||| |||| ||| || ||| |||||||||
Sbjct: 1279593 ctcgtggggttctctatccgcttcatctgcgtcttcccccgcaccatcttcg 1279644
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 30834711 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 30834770
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 30834771 attttgtccat 30834781
Score = 75.8 bits (38), Expect = 5e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||||||||| ||| ||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 4507042 agagcttgccggtggcggagaagacgacgagcccgacctcggcgtcgcagaggatggaga 4507101
Query: 1101 tctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
||| | |||||||| | |||||| ||| ||||| ||||||||||||||||
Sbjct: 4507102 gctcctcggccttcttgaacagccccctcctccgcttcgagaaggtcacctgcc 4507155
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 30832324 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 30832383
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 30832384 atgaggtgc 30832392
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 30832493 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 30832539
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 30831038 cctccttagccgttgatgtggctcagcatccatggtggcag 30831078
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 582 aggaagaagacgatgagcttgt 603
||||||||||||||||||||||
Sbjct: 35829497 aggaagaagacgatgagcttgt 35829476
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 481 cgccgccgcagccacctcttcg 502
||||||||||||||||||||||
Sbjct: 35769156 cgccgccgcagccacctcttcg 35769135
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Plus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 30748617 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 30748676
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 30748677 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 30748736
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 30748737 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 30748796
Query: 1202 atcttc 1207
||||||
Sbjct: 30748797 atcttc 30748802
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 6029409 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 6029468
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 6029469 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 6029528
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 6029529 cttcagctccaccttccccctccccatcttc 6029559
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 30762124 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 30762183
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 30762184 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 30762243
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 30762244 gctgaagcaccaccttgcctcgccccatct 30762273
Score = 127 bits (64), Expect = 2e-026
Identities = 145/172 (84%)
Strand = Plus / Plus
Query: 1037 tcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacg 1096
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1279475 tcgtagagcttgccgcgcggggagaagacgatgagcgcgacctcggcgtcgcagaggacg 1279534
Query: 1097 gagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|||| |||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||
Sbjct: 1279535 gagagctcgaaggccttcttgagcaggccgttgcggcgcttggagaaggtgacctggcgg 1279594
Query: 1157 tttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcg 1208
| | ||||||||||||||||| |||| ||| || ||| |||||||||
Sbjct: 1279595 ctcgtggggttctctatccgcttcatctgcgtcttcccccgcaccatcttcg 1279646
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 30743288 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 30743347
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 30743348 attttgtccat 30743358
Score = 75.8 bits (38), Expect = 5e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||||||||| ||| ||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 4506927 agagcttgccggtggcggagaagacgacgagcccgacctcggcgtcgcagaggatggaga 4506986
Query: 1101 tctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
||| | |||||||| | |||||| ||| ||||| ||||||||||||||||
Sbjct: 4506987 gctcctcggccttcttgaacagccccctcctccgcttcgagaaggtcacctgcc 4507040
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 30740900 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 30740959
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 30740960 atgaggtgc 30740968
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 30741069 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 30741115
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 30739614 cctccttagccgttgatgtggctcagcatccatggtggcag 30739654
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 582 aggaagaagacgatgagcttgt 603
||||||||||||||||||||||
Sbjct: 35739424 aggaagaagacgatgagcttgt 35739403
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 481 cgccgccgcagccacctcttcg 502
||||||||||||||||||||||
Sbjct: 35679083 cgccgccgcagccacctcttcg 35679062
>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
OSJNBa0032E21, complete sequence
Length = 137580
Score = 242 bits (122), Expect = 4e-061
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 1022 gagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcg 1081
||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 55166 gagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcg 55107
Query: 1082 gcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggag 1141
||||||||||| ||||||||||| | ||||||||| |||||||| || ||||||||||
Sbjct: 55106 gcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggag 55047
Query: 1142 aaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccc 1201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 55046 aaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgcccc 54987
Query: 1202 atcttc 1207
||||||
Sbjct: 54986 atcttc 54981
Score = 139 bits (70), Expect = 4e-030
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 41659 gggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttct 41600
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||| ||||
Sbjct: 41599 tgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatcc 41540
Query: 1176 gcttcagctgcaccttgccgcgccccatct 1205
||| ||| ||||||||| ||||||||||
Sbjct: 41539 gctgaagcaccaccttgcctcgccccatct 41510
Score = 85.7 bits (43), Expect = 5e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 947 tcagattcagctgaaataagagccttttcagcataggaatatcgctcataacgttctaga 1006
|||||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct: 60495 tcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaagg 60436
Query: 1007 attttgtccat 1017
|||||||||||
Sbjct: 60435 attttgtccat 60425
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 806 tccagctgctgctctagttgttggagctcttttggattcaaagactctagatcctctccc 865
|||||||||||||| || || || |||||||| |||||||||| || ||||||||||||
Sbjct: 62883 tccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctccc 62824
Query: 866 atcaggtgc 874
|| ||||||
Sbjct: 62823 atgaggtgc 62815
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 887 tgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct: 62714 tgtattgtctcaaccttagccttcagtttcctatattcgtggcacca 62668
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 383 cctccttatgcgttgaggtggctcagcatccatggcggcag 423
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 64169 cctccttagccgttgatgtggctcagcatccatggtggcag 64129
>dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A02, full
insert sequence
Length = 1088
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 258 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 199
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 139
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 138 tgtttatcttgttctcgatccgccgcagctgcacc 104
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBb0040H10
Length = 132919
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 91090 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 91031
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 91030 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 90971
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 90970 tgtttatcttgttctcgatccgccgcagctgcacc 90936
>gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016746, whole
genome shotgun sequence
Length = 33350
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 9363 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 9304
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9303 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 9244
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 9243 tgtttatcttgttctcgatccgccgcagctgcacc 9209
>ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 258 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 199
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 139
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 138 tgtttatcttgttctcgatccgccgcagctgcacc 104
Score = 46.1 bits (23), Expect = 0.047
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 722 agtgacctctccttcttctgtagctcagaaattga 756
|||||| | ||||||||||| ||||||||||||||
Sbjct: 571 agtgacttttccttcttctgaagctcagaaattga 537
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 12348158 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 12348099
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12348098 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 12348039
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 12348038 tgtttatcttgttctcgatccgccgcagctgcacc 12348004
Score = 69.9 bits (35), Expect = 3e-009
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 1075 gacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcg 1134
||||||||| ||| |||| ||| || ||||| ||||||||| | ||| || ||| | |
Sbjct: 8992550 gacctcggcatcgtagagcacgacgagctcgtacgccttcttgaccagaccattcttgtg 8992609
Query: 1135 cttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcacc 1189
|||||| ||||||||||| | ||| ||||||||||| ||||||||||||| ||||
Sbjct: 8992610 cttggaaaaggtcacctgtctgttgatcttgttctcgatccgcttcagctccacc 8992664
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 10227457 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 10227398
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10227397 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 10227338
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 10227337 tgtttatcttgttctcgatccgccgcagctgcacc 10227303
Score = 69.9 bits (35), Expect = 3e-009
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 1075 gacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcg 1134
||||||||| ||| |||| ||| || ||||| ||||||||| | ||| || ||| | |
Sbjct: 6843476 gacctcggcatcgtagagcacgacgagctcgtacgccttcttgaccagaccattcttgtg 6843535
Query: 1135 cttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcacc 1189
|||||| ||||||||||| | ||| ||||||||||| ||||||||||||| ||||
Sbjct: 6843536 cttggaaaaggtcacctgtctgttgatcttgttctcgatccgcttcagctccacc 6843590
>emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box protein
Length = 974
Score = 212 bits (107), Expect = 3e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 245 actcgtagagcttgcccttggtggagaagacgatgagcgcgacgtcggcgtcacagagca 186
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 cggagatctcgtgcgccttcttcagcagcccgttcctccgcttggagaaggtcacctgcc 126
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
||||||||||||||| |||||| ||||||||||
Sbjct: 125 tgtttatcttgttctcgatccgccgcagctgcacc 91
Score = 46.1 bits (23), Expect = 0.047
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 722 agtgacctctccttcttctgtagctcagaaattga 756
|||||| | ||||||||||| ||||||||||||||
Sbjct: 558 agtgacttttccttcttctgaagctcagaaattga 524
>emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein
Length = 1003
Score = 168 bits (85), Expect = 5e-039
Identities = 148/169 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 171 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 112
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 111 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 52
Query: 1155 ggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccat 1203
|||| ||||||||||| |||| |||||||| ||||||||| | ||||||
Sbjct: 51 ggttgatcttgttctcgatcctcttcagctccaccttgcccctccccat 3
>gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0093F09f, DNA sequence
Length = 544
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 84 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 143
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 144 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 203
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 204 ggttgatcttgttctcgatcctcttcagctccacc 238
>gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonica cultivar-group) cDNA clone
C30192_2B, mRNA sequence
Length = 338
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 163 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 104
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 103 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 44
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 43 cttcagctccaccttccccctccccatcttc 13
>dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029M13, full
insert sequence
Length = 1152
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 239 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 180
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 179 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 120
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 119 cttcagctccaccttccccctccccatcttc 89
>dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O08, full
insert sequence
Length = 1188
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 235 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 176
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 175 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 116
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 115 cttcagctccaccttccccctccccatcttc 85
>dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063L04, full
insert sequence
Length = 1055
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 235 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 176
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 175 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 116
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 115 ggttgatcttgttctcgatcctcttcagctccacc 81
>gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) mRNA, complete cds
Length = 1078
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 267 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 208
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 207 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 148
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 147 ggttgatcttgttctcgatcctcttcagctccacc 113
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0090D11, complete sequence
Length = 174865
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 22885 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 22944
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 22945 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 23004
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 23005 cttcagctccaccttccccctccccatcttc 23035
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
complete sequence
Length = 111961
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 87944 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 88003
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 88004 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 88063
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 88064 cttcagctccaccttccccctccccatcttc 88094
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0702E04
Length = 190948
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 49784 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 49725
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 49724 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 49665
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 49664 ggttgatcttgttctcgatcctcttcagctccacc 49630
Score = 85.7 bits (43), Expect = 5e-014
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 1054 gggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgcctt 1113
|||||||||||||| || |||||||| |||||||||||| ||||| | ||||| ||||||
Sbjct: 61099 gggggagaagacgaggagggcgacctgggcgtcgcagagcacggacagctcgtacgcctt 61040
Query: 1114 cttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
||| | ||||||| |||| ||||| ||||| ||||||||||
Sbjct: 61039 cttgaacagcccgctccgccgcttcgagaatcgcacctgccgg 60997
>gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS216
mRNA, complete cds
Length = 1265
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 402 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 343
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 342 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 283
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 282 ggttgatcttgttctcgatcctcttcagctccacc 248
>gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006102, whole
genome shotgun sequence
Length = 24772
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 19959 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 20018
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 20019 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 20078
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 20079 cttcagctccaccttccccctccccatcttc 20109
>gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018907, whole
genome shotgun sequence
Length = 31772
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 6198 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 6139
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 6138 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 6079
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 6078 ggttgatcttgttctcgatcctcttcagctccacc 6044
Score = 85.7 bits (43), Expect = 5e-014
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 1054 gggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgcctt 1113
|||||||||||||| || |||||||| |||||||||||| ||||| | ||||| ||||||
Sbjct: 17514 gggggagaagacgaggagggcgacctgggcgtcgcagagcacggacagctcgtacgcctt 17455
Query: 1114 cttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
||| | ||||||| |||| ||||| ||||| ||||||||||
Sbjct: 17454 cttgaacagcccgctccgccgcttcgagaatcgcacctgccgg 17412
>ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1056
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 236 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 177
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 176 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 117
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 116 ggttgatcttgttctcgatcctcttcagctccacc 82
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1192955 ggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttctt 1193014
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 1193015 gagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 1193074
Query: 1177 cttcagctgcaccttgccgcgccccatcttc 1207
|||||||| |||||| || | ||||||||||
Sbjct: 1193075 cttcagctccaccttccccctccccatcttc 1193105
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct: 26262830 actcgtagagcttgccgcggttggagaagatgatgagggcgacctcggcgtcgcagagga 26262771
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| || |||| |||||||| ||| ||||||||||
Sbjct: 26262770 cggagagctcgtacgccttcttgagcaggccattcctgcgcttggcgaacgtcacctgcc 26262711
Query: 1155 ggtttatcttgttctctatccgcttcagctgcacc 1189
|||| ||||||||||| |||| |||||||| ||||
Sbjct: 26262710 ggttgatcttgttctcgatcctcttcagctccacc 26262676
Score = 85.7 bits (43), Expect = 5e-014
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 1054 gggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgcctt 1113
|||||||||||||| || |||||||| |||||||||||| ||||| | ||||| ||||||
Sbjct: 26274145 gggggagaagacgaggagggcgacctgggcgtcgcagagcacggacagctcgtacgcctt 26274086
Query: 1114 cttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
||| | ||||||| |||| ||||| ||||| ||||||||||
Sbjct: 26274085 cttgaacagcccgctccgccgcttcgagaatcgcacctgccgg 26274043
Score = 75.8 bits (38), Expect = 5e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 1054 gggggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgcctt 1113
||||||||| | || || |||||| ||| ||||||||| ||||| | ||||| ||||||
Sbjct: 24148389 gggggagaacatgaggagggcgacgtcgatgtcgcagagcacggacagctcgtacgcctt 24148448
Query: 1114 cttcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctat 1173
||| | |||||||||||| ||||| ||||| |||||||||| ||| || ||||||| ||
Sbjct: 24148449 cttgatcagcccgttccgccgcttcgagaacgtcacctgcctgttcgtcgtgttctcgat 24148508
Query: 1174 cc 1175
||
Sbjct: 24148509 cc 24148510
Score = 71.9 bits (36), Expect = 8e-010
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
||||||||||| || | |||||||||| |||||||||| ||||| ||| |||||||||
Sbjct: 20661378 ggagaagacgaggaggccgacctcggcatcgcagaggatggagagctccctcgccttctt 20661437
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctg 1152
| ||||||| |||| ||||| ||||| ||||||||
Sbjct: 20661438 gaacagcccgctccgccgcttcgagaatgtcacctg 20661473
Score = 65.9 bits (33), Expect = 5e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 1037 tcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacg 1096
|||||||||||||| | || |||||||| ||||| | ||| ||||| |||||||||| |
Sbjct: 439863 tcgtagagcttgccgtgggcggagaagatgatgatgccgatgtcggcctcgcagaggatg 439804
Query: 1097 gagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|||| ||| |||||||||||||| ||| ||||||||| ||||||| ||||| |||
Sbjct: 439803 gagagctccctggccttcttcagcaggccggcacggcgcttgcagaaggtgacctgacgg 439744
Query: 1157 t 1157
|
Sbjct: 439743 t 439743
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,565,859
Number of Sequences: 438736
Number of extensions: 2565859
Number of successful extensions: 21717
Number of sequences better than 0.5: 395
Number of HSP's better than 0.5 without gapping: 445
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16639
Number of HSP's gapped (non-prelim): 4978
length of query: 1272
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1251
effective length of database: 2,791,206,460
effective search space: 3491799281460
effective search space used: 3491799281460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)