BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713139.2.1
(487 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 ... 244 4e-062
gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) c... 244 4e-062
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 244 4e-062
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 244 4e-062
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 244 4e-062
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 244 4e-062
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 244 4e-062
gb|CV723179.1|CV723179 root--02-L17.g1 Rice root lambda pha... 172 1e-040
dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA... 172 1e-040
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 172 1e-040
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 172 1e-040
ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA 172 1e-040
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 172 1e-040
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 172 1e-040
gb|CF332318.1|CF332318 NACL--08-M12.g1 Rice callus plasmid ... 161 4e-037
gb|CF276274.1|CF276274 14ETL--01-F21.g1 Rice etiolated leaf... 153 1e-034
gb|AU101434.1|AU101434 AU101434 Rice panicle shorter than 3... 131 4e-028
gb|C91768.1|C91768 C91768 Rice panicle shorter than 3cm Ory... 123 9e-026
gb|CF296282.1|CF296282 30DGS--06-J07.b1 Rice leaf plasmid c... 117 6e-024
gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of ... 82 3e-013
gb|AQ872471.1|AQ872471 nbeb0048N21f CUGI Rice BAC Library (... 76 2e-011
gb|AU077571.1|AU077571 AU077571 Rice callus Oryza sativa (j... 76 2e-011
gb|CB000151.1|CB000151 S345X_G06 Rice cold stress germinati... 76 2e-011
dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA... 76 2e-011
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 76 2e-011
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 76 2e-011
gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|AU162811.1|AU162811 AU162811 Rice green shoot Oryza sati... 72 3e-010
dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
gb|AU066132.1|AU066132 AU066132 Rice shoot Oryza sativa (ja... 64 7e-008
gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 ... 64 7e-008
gb|AACV01006954.1| Oryza sativa (japonica cultivar-group) c... 64 7e-008
ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-008
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 64 7e-008
dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
gb|D24971.1|D24971 RICR2871A Rice root Oryza sativa (japoni... 52 3e-004
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
sequence
Length = 145590
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 44743 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 44802
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 44803 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 44862
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 44863 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 44922
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 44923 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 44972
>gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007276, whole
genome shotgun sequence
Length = 14197
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 3627 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 3686
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 3687 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 3746
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 3747 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 3806
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 3807 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 3856
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 3037600 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 3037659
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 3037660 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 3037719
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 3037720 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 3037779
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 3037780 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 3037829
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 9037062 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 9037121
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 9037122 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 9037181
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 9037182 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 9037241
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 9037242 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 9037291
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 4342801 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 4342742
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 4342741 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 4342682
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 4342681 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 4342622
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 4342621 cagacgccgtgggcggccctggccgcctcgtaggc 4342587
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 23087769 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 23087828
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 23087829 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 23087888
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 23087889 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 23087948
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 23087949 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 23087998
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 31924903 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 31924844
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 31924843 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 31924784
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 31924783 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 31924724
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 31924723 aggatgcaga 31924714
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 18393508 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 18393449
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 18393448 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 18393389
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 18393388 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 18393329
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 18393328 cagacgccgtgggcggccctggccgcctcgtaggc 18393294
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 22442525 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 22442584
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 22442585 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 22442644
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 22442645 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 22442704
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 22442705 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 22442754
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 31104572 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 31104513
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 31104512 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 31104453
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 31104452 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 31104393
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 31104392 aggatgcaga 31104383
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 17582023 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 17581964
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 17581963 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 17581904
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 17581903 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 17581844
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 17581843 cagacgccgtgggcggccctggccgcctcgtaggc 17581809
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 244 bits (123), Expect = 4e-062
Identities = 203/230 (88%)
Strand = Plus / Plus
Query: 256 gatcacgcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtag 315
||||| |||||||| ||||||||| ||||||| | |||||||||||||||||| | ||||
Sbjct: 22449496 gatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtag 22449555
Query: 316 acgacgaagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatg 375
|||||||||||||| ||||||||| | | |||||||||||||||||||||||||| |
Sbjct: 22449556 acgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagagg 22449615
Query: 376 aaggctggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcc 435
||||| |||||||||||||||||| |||| |||| |||||||||| | ||| ||||||
Sbjct: 22449616 aaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcc 22449675
Query: 436 cactcggcgaggatgcagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 22449676 cactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggc 22449725
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 31014049 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 31013990
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 31013989 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 31013930
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 31013929 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 31013870
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 31013869 aggatgcaga 31013860
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 17588482 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 17588423
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 17588422 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 17588363
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 17588362 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 17588303
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 17588302 cagacgccgtgggcggccctggccgcctcgtaggc 17588268
>gb|CV723179.1|CV723179 root--02-L17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-L17, mRNA sequence
Length = 481
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 155 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 214
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 215 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 274
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 275 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 334
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 335 aggatgcaga 344
>dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F12, full
insert sequence
Length = 1946
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 1548 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 1489
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 1488 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 1429
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 1428 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 1369
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 1368 aggatgcaga 1359
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
genomic sequence, complete sequence
Length = 168759
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 82015 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 82074
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 82075 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 82134
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 82135 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 82194
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 82195 aggatgcaga 82204
>gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007956, whole
genome shotgun sequence
Length = 44568
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 36190 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 36131
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 36130 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 36071
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 36070 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 36011
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 36010 aggatgcaga 36001
>ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2058
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 1643 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 1584
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 1583 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 1524
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 1523 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 1464
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 1463 aggatgcaga 1454
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 193456 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 193397
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 193396 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 193337
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 193336 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 193277
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 193276 aggatgcaga 193267
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 172 bits (87), Expect = 1e-040
Identities = 164/190 (86%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 4658740 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 4658681
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 4658680 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 4658621
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 4658620 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 4658561
Query: 445 aggatgcaga 454
||||||||||
Sbjct: 4658560 aggatgcaga 4658551
>gb|CF332318.1|CF332318 NACL--08-M12.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-M12, mRNA sequence
Length = 523
Score = 161 bits (81), Expect = 4e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 109 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 168
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||||||||||||||||||||||| ||| || |||
Sbjct: 169 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaagacgaacgccggc 228
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| | || ||||||||||||| |
Sbjct: 229 ttctgcatgttgtcgtaaatcttctggtagtcgagcgtcttaaactcgtcccactcggtg 288
Query: 445 aggatgca 452
||||||||
Sbjct: 289 aggatgca 296
>gb|CF276274.1|CF276274 14ETL--01-F21.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-F21, mRNA sequence
Length = 399
Score = 153 bits (77), Expect = 1e-034
Identities = 160/188 (85%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||
Sbjct: 211 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtaaacgatgaag 270
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggc 384
|||||||||| |||||| | | |||||| ||||||||||||||||||| ||| || |||
Sbjct: 271 ccgatctccctgagcttctccgggtcgacaacgttgcggccgtcgaagacgaacgccggc 330
Query: 385 ttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcg 444
|| |||||| |||| | || || ||||||||||||| |||| ||||||||||||| |
Sbjct: 331 ttctgcatgttgtcgtagatcttctggtagtcgagcgtcttgaactcgtcccactcggtg 390
Query: 445 aggatgca 452
||||||||
Sbjct: 391 aggatgca 398
>gb|AU101434.1|AU101434 AU101434 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31507, mRNA sequence
Length = 320
Score = 131 bits (66), Expect = 4e-028
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 112 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 53
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaaga 373
|||||||||| |||||| | | ||||||||||||||||||||||||||
Sbjct: 52 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtcgaaga 4
>gb|C91768.1|C91768 C91768 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31507_1A, mRNA sequence
Length = 449
Score = 123 bits (62), Expect = 9e-026
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||
Sbjct: 209 acggcgggcatgtccttgagccaggcgtcgagcggcttgccgatggagtagacgatgaag 268
Query: 325 ccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaag 372
|||||||||| |||||| | | |||||||||||||||||||| ||||
Sbjct: 269 ccgatctccctgagcttctccgggtcgacgacgttgcggccgtngaag 316
Score = 44.1 bits (22), Expect = 0.069
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 411 gtagtcgagcgtcctgaattcgtcccactcggcg-aggatgcaga 454
|||||||||||| |||| ||||||||||||| | ||||||||||
Sbjct: 356 gtagtcgagcgtnttgaactcgtcccactcggtgaaggatgcaga 400
>gb|CF296282.1|CF296282 30DGS--06-J07.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--06-J07, mRNA sequence
Length = 499
Score = 117 bits (59), Expect = 6e-024
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| |||| |||||||||||||| | ||| |||| ||||||||||
Sbjct: 229 ggcatgtccttgagccaggcgtcaagcggcttgccgatggagtaaacgatgaagccgatc 288
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| | | |||||| |||||||||||||| || | || || ||||| |||
Sbjct: 289 tccctgagcttctccgggtcgacaacgttgcggccgtcaaaaacaaacgccggcttctgc 348
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| |||| | || || ||||||||||||| |||| ||||||||||||| |||||||
Sbjct: 349 atgttgtcgtaaatcttctggtagtcgagcgtcttgaactcgtcccactcggtgaggatg 408
Query: 451 ca 452
||
Sbjct: 409 ca 410
>gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI110, mRNA
sequence
Length = 733
Score = 81.8 bits (41), Expect = 3e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 355 acgttgcggccgtcgaagatgaaggctggcttgtgcatggcgtcgaacatgcgcttgtag 414
||||||||||||||||||| ||| || ||||| |||||| |||| | || || ||||
Sbjct: 733 acgttgcggccgtcgaagacgaacgccggcttctgcatgtngtcgtagatcttctggtag 674
Query: 415 tcgagcgtcctgaattcgtcccactcggcgaggatgcaga 454
||||||||| |||| ||||||||||||| |||||||||||
Sbjct: 673 tcgagcgtcttgaactcgtcccactcggtgaggatgcaga 634
>gb|AQ872471.1|AQ872471 nbeb0048N21f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0048N21f, DNA sequence
Length = 763
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 318 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 377
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 378 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 437
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 438 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 497
Query: 451 cagac 455
|||||
Sbjct: 498 cagac 502
>gb|AU077571.1|AU077571 AU077571 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2433_2Z, mRNA sequence
Length = 698
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 373 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 314
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 313 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 254
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 253 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 194
Query: 451 cagac 455
|||||
Sbjct: 193 cagac 189
>gb|CB000151.1|CB000151 S345X_G06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 598
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 405 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 346
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 345 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 286
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 285 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 226
Query: 451 cagac 455
|||||
Sbjct: 225 cagac 221
>dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H11, full
insert sequence
Length = 1852
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 1550 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 1491
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 1490 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 1431
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 1430 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 1371
Query: 451 cagac 455
|||||
Sbjct: 1370 cagac 1366
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 147422 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 147481
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 147482 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 147541
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 147542 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 147601
Query: 451 cagac 455
|||||
Sbjct: 147602 cagac 147606
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 141546 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 141605
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 141606 tccctgagctt 141616
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 1250087 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 1250028
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 1250027 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 1249968
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 1249967 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 1249908
Query: 451 cagac 455
|||||
Sbjct: 1249907 cagac 1249903
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 1255963 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 1255904
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 1255903 tccctgagctt 1255893
>gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024705, whole
genome shotgun sequence
Length = 64049
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 37842 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 37783
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 37782 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 37723
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 37722 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 37663
Query: 451 cagac 455
|||||
Sbjct: 37662 cagac 37658
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 43718 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 43659
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 43658 tccctgagctt 43648
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 389027 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 388968
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 388967 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 388908
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 388907 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 388848
Query: 451 cagac 455
|||||
Sbjct: 388847 cagac 388843
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 394903 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 394844
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 394843 tccctgagctt 394833
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 12422086 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 12422027
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 12422026 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 12421967
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 12421966 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 12421907
Query: 451 cagac 455
|||||
Sbjct: 12421906 cagac 12421902
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 12427962 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 12427903
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 12427902 tccctgagctt 12427892
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 14934425 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 14934366
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 14934365 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 14934306
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 14934305 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 14934246
Query: 451 cagac 455
|||||
Sbjct: 14934245 cagac 14934241
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 14940301 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 14940242
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 14940241 tccctgagctt 14940231
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 75.8 bits (38), Expect = 2e-011
Identities = 148/185 (80%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 14888708 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 14888649
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||||| ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 14888648 tccctgagcttctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 14888589
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 14888588 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 14888529
Query: 451 cagac 455
|||||
Sbjct: 14888528 cagac 14888524
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 14894584 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 14894525
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 14894524 tccctgagctt 14894514
>gb|AU162811.1|AU162811 AU162811 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10677, mRNA sequence
Length = 293
Score = 71.9 bits (36), Expect = 3e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaag 324
||||| ||||||||||||||||| |||||||||| |||||||| | |||||||| ||||
Sbjct: 63 acggcgggcatgtccttgagccaggcgtcgagcggnttgccgatggagtagacgatgaag 4
Query: 325 ccg 327
|||
Sbjct: 3 ccg 1
>dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E05, full
insert sequence
Length = 1865
Score = 67.9 bits (34), Expect = 5e-009
Identities = 147/185 (79%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | || |||||||||||||| | |||||||| ||| || |||
Sbjct: 1550 ggcatgtccttgagccaggcatcaagcggcttgccgatggagtagacgatgaacccaatc 1491
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| |||| | ||| ||||| || ||||| || || |||| ||| || ||||| |||
Sbjct: 1490 tccctgagcctctcggcatcgaccacattgcgcccatcaaagacgaatgcaggcttctgc 1431
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
||| ||| || || || |||||| | ||| |||| ||||||||||||| |||||||
Sbjct: 1430 atgttgtcaaagatcttctggtagtccaaggtcttgaactcgtcccactcggtgaggatg 1371
Query: 451 cagac 455
|||||
Sbjct: 1370 cagac 1366
>gb|AU066132.1|AU066132 AU066132 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5140_1A, mRNA sequence
Length = 350
Score = 63.9 bits (32), Expect = 7e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 411 gtagtcgagcgtcctgaattcgtcccactcggcgaggatgcaga 454
||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct: 312 gtagtcgagcgtcttgaactcgtcccactcggtgaggatgcaga 269
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete
sequence
Length = 97152
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 66595 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 66654
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 66655 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 66714
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 66715 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 66774
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 66775 cagacgccgtgggcggccctggccgcctcgtaggc 66809
>gb|AACV01006954.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006954, whole
genome shotgun sequence
Length = 2085
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Plus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 797 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 856
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 857 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 916
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 917 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 976
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 977 cagacgccgtgggcggccctggccgcctcgtaggc 1011
>ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1446
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 1433 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 1374
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 1373 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 1314
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 1313 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 1254
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 1253 cagacgccgtgggcggccctggccgcctcgtaggc 1219
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 63.9 bits (32), Expect = 7e-008
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
||||||||||||||||| | ||||| |||||||| || | |||||||| ||| || |||
Sbjct: 1068191 ggcatgtccttgagccaggcatcgagaggcttgccaatggagtagacgatgaatccaatc 1068132
Query: 331 tcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggctggcttgtgc 390
|||| ||||| | | ||| || |||||||| |||||||| | ||| || ||||| |||
Sbjct: 1068131 tccctcagcttctcagcgtcaaccacgttgcgcccgtcgaacacgaacgccggcttctgc 1068072
Query: 391 atggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcggcgaggatg 450
|| | || | || | | ||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 1068071 attcccccgtagatcctcgcgtagtcgaggctcctgaactcgtcccactcagtgaggatg 1068012
Query: 451 cagacggcgtgcgcgtcgcgcgcggcctcgtaggc 485
|||||| |||| ||| | | || |||||||||||
Sbjct: 1068011 cagacgccgtgggcggccctggccgcctcgtaggc 1067977
>dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full
insert sequence
Length = 1824
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 1665 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 1606
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 1605 tccctgagctt 1595
>dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A09, full
insert sequence
Length = 1774
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 271 ggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacgaagccgatc 330
|||||||| |||||||| | || |||||||||||||||| |||||| | |||||| |||
Sbjct: 1536 ggcatgtctttgagccatgcatcaagcggcttgccgatagagtagacaatgaagccaatc 1477
Query: 331 tcccggagctt 341
|||| ||||||
Sbjct: 1476 tccctgagctt 1466
>gb|D24971.1|D24971 RICR2871A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2871_1A, mRNA sequence
Length = 433
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 265 acggctggcatgtccttgagccaatcgtcgagcggctt 302
||||| ||||||||||||||||| |||||||||||||
Sbjct: 396 acggcgggcatgtccttgagccaggcgtcgagcggctt 433
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 852,093
Number of Sequences: 438736
Number of extensions: 852093
Number of successful extensions: 23178
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22410
Number of HSP's gapped (non-prelim): 746
length of query: 487
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 466
effective length of database: 2,791,206,460
effective search space: 1300702210360
effective search space used: 1300702210360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)