BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) c... 168 2e-039
ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 168 2e-039
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 168 2e-039
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 168 2e-039
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 72 4e-010
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 72 4e-010
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 72 4e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 54 8e-005
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 54 8e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 52 3e-004
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 52 3e-004
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AY873558.1|AY873558 06ET3_387_D_003_028_017A12 Oryza sat... 50 0.001
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|C71824.1|C71824 C71824 Rice panicle at flowering stage O... 42 0.32
gb|C74537.1|C74537 C74537 Rice panicle shorter than 3cm Ory... 42 0.32
gb|AU091468.1|AU091468 AU091468 Rice mature leaf Oryza sati... 42 0.32
gb|CA756102.1|CA756102 BR030035000_PLATE_B03_18_027.ab1 OA ... 42 0.32
gb|CB647558.1|CB647558 OSJNEb10I15.f OSJNEb Oryza sativa (j... 42 0.32
gb|CB656724.1|CB656724 OSJNEc11G06.f OSJNEc Oryza sativa (j... 42 0.32
gb|CB670599.1|CB670599 OSJNEe03M03.f OSJNEe Oryza sativa (j... 42 0.32
gb|CD670817.1|CD670817 OsMR236 5MT resistant rice mutant cD... 42 0.32
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 42 0.32
gb|AC121360.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
dbj|AK066453.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK067742.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK068818.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK098906.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK098911.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK103421.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK104838.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK109839.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK110178.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK110228.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.32
gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbar... 42 0.32
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 42 0.32
gb|AC120986.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01002964.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01006466.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01012724.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01022444.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01027079.1| Oryza sativa (japonica cultivar-group) C... 42 0.32
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 42 0.32
ref|XM_463660.1| Oryza sativa (japonica cultivar-group), p... 42 0.32
ref|XM_467784.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.32
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 42 0.32
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.32
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 42 0.32
dbj|AP005733.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 42 0.32
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP004223.2| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|AC123897.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|AC128643.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
>dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021B13, full
insert sequence
Length = 2092
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 1660 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 1719
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 1720 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 1779
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 1780 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 1839
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 1840 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 1899
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 1900 tgcacggcgccgactggatcccggagaccggcacgcc 1936
>gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006830, whole
genome shotgun sequence
Length = 17244
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Minus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 11621 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 11562
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 11561 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 11502
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 11501 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 11442
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 11441 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 11382
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 11381 tgcacggcgccgactggatcccggagaccggcacgcc 11345
>ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1812
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 1508 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 1567
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 1568 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 1627
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 1628 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 1687
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 1688 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 1747
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 1748 tgcacggcgccgactggatcccggagaccggcacgcc 1784
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 2382582 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 2382641
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 2382642 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 2382701
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 2382702 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 2382761
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 2382762 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 2382821
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 2382822 tgcacggcgccgactggatcccggagaccggcacgcc 2382858
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 2567883 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 2567942
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 2567943 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 2568002
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 2568003 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 2568062
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 2568063 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 2568122
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 2568123 tgcacggcgccgactggatcccggagaccggcacgcc 2568159
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 16618590 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 16618649
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 16618650 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 16618709
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 16618710 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 16618769
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 16618770 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 16618829
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 16618830 tgcacggcgccgactggatcccggagaccggcacgcc 16618866
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 11429494 cagcagcagcaacagcaacaa 11429474
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 15985840 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 15985899
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 15985900 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 15985959
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 15985960 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 15986019
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 15986020 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 15986079
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 15986080 tgcacggcgccgactggatcccggagaccggcacgcc 15986116
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 11154737 cagcagcagcaacagcaacaa 11154717
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Plus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 15991306 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 15991365
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 15991366 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 15991425
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 15991426 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 15991485
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 15991486 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 15991545
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 15991546 tgcacggcgccgactggatcccggagaccggcacgcc 15991582
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 11157974 cagcagcagcaacagcaacaa 11157954
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0087G11, complete sequence
Length = 169728
Score = 168 bits (85), Expect = 2e-039
Identities = 229/277 (82%)
Strand = Plus / Minus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattg 134
|||||||||| ||||||||||||||| |||||||||| | ||||||||||| || || |
Sbjct: 59111 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtcggtgatcg 59052
Query: 135 acggattcgtgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacgg 194
|| ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 59051 gagggttcgtgcacgcgcaggggtacatgccgtgggaggggaaggacaacctgggcgagg 58992
Query: 195 ccttcttcggagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggaga 254
| |||| ||| |||| | | ||| |||| | ||||||||| || ||| ||| |||||
Sbjct: 58991 cgttctacggggagtacggcaacagcgggcaaggcgccaactcgacggggaggatggaga 58932
Query: 255 tgcaggggttccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttct 314
||| ||||||||||||| ||| || ||| | ||| |||||||||||||||| | ||||
Sbjct: 58931 tgcgggggttccacgtgctggacagggagaaggccatgcagttcacggtgggccgcttcc 58872
Query: 315 tgcacggcgcggactggataccggagactggcacgcc 351
|||||||||| |||||||| |||||||| ||||||||
Sbjct: 58871 tgcacggcgccgactggatcccggagaccggcacgcc 58835
>dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full
insert sequence
Length = 3236
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 2657 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 2704
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 55356 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 55403
>ref|XM_474065.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2916
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 2617 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 2664
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 57483 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 57530
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 10346227 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 10346274
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 29490326 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 29490373
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 21897 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 21944
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 57483 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 57530
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 32662462 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 32662509
>dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C11, full
insert sequence
Length = 1679
Score = 63.9 bits (32), Expect = 9e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 75 cgtacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtc 126
|||||||||| ||||||||||||||| |||||||||| | |||||||||||
Sbjct: 74 cgtacctggggcggccgtggaaggagcacgcgaggacgatcgtgatggagtc 23
>dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138H21, full
insert sequence
Length = 1963
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 1493 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 1543
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
complete sequence
Length = 148373
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 88744 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 88794
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
complete sequence
Length = 164064
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 39512 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 39562
>ref|XM_475113.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1701
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 1381 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 1431
>ref|NT_107210.1| Oryza sativa (japonica cultivar-group)
Length = 1353368
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 88744 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 88794
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 54.0 bits (27), Expect = 8e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| ||||||||||||||| | ||| | ||||||||||| |||||||||
Sbjct: 17095377 tacctcggccggccgtggaagaacttctccaggacggtggtcatggagtcc 17095427
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 28011613 cagcagcagcaacagcaacaa 28011593
>gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16A10 3', mRNA sequence
Length = 792
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 460 acgttcctgggccggccgtggaaggagtactcgcggacggtg 419
>gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10L01 3', mRNA sequence
Length = 572
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 438 acgttcctgggccggccgtggaaggagtactcgcggacggtg 397
>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full
insert sequence
Length = 1859
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 1396 acgttcctgggccggccgtggaaggagtactcgcggacggtg 1437
>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full
insert sequence
Length = 1849
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 1396 acgttcctgggccggccgtggaaggagtactcgcggacggtg 1437
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0415A04
Length = 160669
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 129040 acgttcctgggccggccgtggaaggagtactcgcggacggtg 129081
>gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002476, whole
genome shotgun sequence
Length = 16268
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 14679 acgttcctgggccggccgtggaaggagtactcgcggacggtg 14638
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 33533544 acgttcctgggccggccgtggaaggagtactcgcggacggtg 33533585
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 40559056 cagcagcagcaacagcaacaa 40559036
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 38281312 tacctgggccggccctggaaggagt 38281288
>ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1692
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 1390 acgttcctgggccggccgtggaaggagtactcgcggacggtg 1431
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 7980927 acgttcctgggccggccgtggaaggagtactcgcggacggtg 7980968
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 12728695 tacctgggccggccctggaaggagt 12728671
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 7913592 acgttcctgggccggccgtggaaggagtactcgcggacggtg 7913633
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 14760261 cagcagcagcaacagcaacaa 14760241
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 12464250 tacctgggccggccctggaaggagt 12464226
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 12462790 tacctgggccggccctggaaggagt 12462766
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 33115313 acgttcctgggccggccgtggaaggagtactcgcggacggtg 33115354
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 39961982 cagcagcagcaacagcaacaa 39961962
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 37665971 tacctgggccggccctggaaggagt 37665947
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 37664511 tacctgggccggccctggaaggagt 37664487
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagttcgcgaggacggtg 115
|||| ||||||||||||||||||||||| | || ||||||||
Sbjct: 33452874 acgttcctgggccggccgtggaaggagtactcgcggacggtg 33452915
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 40478386 cagcagcagcaacagcaacaa 40478366
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 38200642 tacctgggccggccctggaaggagt 38200618
>gb|AY873558.1|AY873558 06ET3_387_D_003_028_017A12 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
06ET3_387_D_003_028_017A12, DNA sequence
Length = 312
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 291 tgcagttcacggtggggcacttcttgcacggcgcggactgg 331
|||||||||||||||| | |||| || ||||||||||||||
Sbjct: 152 tgcagttcacggtgggccgcttcctgtacggcgcggactgg 192
>gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011953, whole
genome shotgun sequence
Length = 17586
Score = 46.1 bits (23), Expect = 0.021
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| |||||||| |||||| | ||| | ||||||||||| |||||||||
Sbjct: 12704 tacctcggccggccctggaagaacttctccaggacggtggtcatggagtcc 12654
>gb|CH401205.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000042 genomic
scaffold, whole genome shotgun sequence
Length = 2493951
Score = 46.1 bits (23), Expect = 0.021
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| |||||||| |||||| | ||| | ||||||||||| |||||||||
Sbjct: 1985140 tacctcggccggccctggaagaacttctccaggacggtggtcatggagtcc 1985190
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 46.1 bits (23), Expect = 0.021
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggagtcc 127
||||| |||||||| |||||| | ||| | ||||||||||| |||||||||
Sbjct: 16791402 tacctcggccggccctggaagaacttctccaggacggtggtcatggagtcc 16791452
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 27765405 cagcagcagcaacagcaacaa 27765385
>gb|C71824.1|C71824 C71824 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0410_2A, mRNA sequence
Length = 356
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 21 cagcagcagcaacagcaacaa 1
>gb|C74537.1|C74537 C74537 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31817_1A, mRNA sequence
Length = 306
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 29 cagcagcagcaacagcaacaa 9
>gb|AU091468.1|AU091468 AU091468 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20339, mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 31 cagcagcagcaacagcaacaa 11
>gb|CA756102.1|CA756102 BR030035000_PLATE_B03_18_027.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030035000_PLATE_B03_18_027.ab1 similar to Phytepsin
precursor (Aspartic proteinase) gi|100567|pir|S19697
aspartic proteinase (EC 3.4.23.-) precursor - barley
gi|18904|emb|CAA39602.1| (X56136) aspartic proteinase
[Hordeum vulgare subsp. vulgare], mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 23 cagcagcagcaacagcaacaa 3
>gb|CB647558.1|CB647558 OSJNEb10I15.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I15 5', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 26 cagcagcagcaacagcaacaa 6
>gb|CB656724.1|CB656724 OSJNEc11G06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11G06 5', mRNA sequence
Length = 878
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 31 cagcagcagcaacagcaacaa 11
>gb|CB670599.1|CB670599 OSJNEe03M03.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03M03 5', mRNA sequence
Length = 813
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 23 cagcagcagcaacagcaacaa 3
>gb|CD670817.1|CD670817 OsMR236 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 79 cagcagcagcaacagcaacaa 59
>dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1027B04, ***
SEQUENCING IN PROGRESS ***
Length = 168033
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagt 101
|||||||||||||| ||||||||||
Sbjct: 16319 tacctgggccggccctggaaggagt 16295
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 941,399
Number of Sequences: 438736
Number of extensions: 941399
Number of successful extensions: 51178
Number of sequences better than 0.5: 98
Number of HSP's better than 0.5 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47957
Number of HSP's gapped (non-prelim): 3169
length of query: 571
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 550
effective length of database: 2,791,206,460
effective search space: 1535163553000
effective search space used: 1535163553000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)