BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670899.2.1
(555 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB641394.1|CB641394 OSJNEb01A04.r OSJNEb Oryza sativa (j... 468 e-129
gb|CB652815.1|CB652815 OSJNEc03D13.r OSJNEc Oryza sativa (j... 468 e-129
gb|CB652849.1|CB652849 OSJNEc03E13.r OSJNEc Oryza sativa (j... 468 e-129
gb|CB652907.1|CB652907 OSJNEc03G13.r OSJNEc Oryza sativa (j... 468 e-129
dbj|AK072854.1| Oryza sativa (japonica cultivar-group) cDNA... 468 e-129
dbj|AP005002.3| Oryza sativa (japonica cultivar-group) geno... 468 e-129
gb|AACV01005462.1| Oryza sativa (japonica cultivar-group) c... 468 e-129
ref|XM_467938.1| Oryza sativa (japonica cultivar-group), mRNA 468 e-129
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 468 e-129
dbj|AP004817.3| Oryza sativa (japonica cultivar-group) geno... 468 e-129
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 468 e-129
gb|CB640020.1|CB640020 OSJNEa12P02.f OSJNEa Oryza sativa (j... 460 e-127
gb|CB641473.1|CB641473 OSJNEb01C06.r OSJNEb Oryza sativa (j... 460 e-127
gb|CB655512.1|CB655512 OSJNEc09A08.r OSJNEc Oryza sativa (j... 452 e-125
gb|CO435953.1|CO435953 OsMR587 5MT resistant rice mutant cD... 280 8e-073
gb|CF312679.1|CF312679 ABF--08-I14.g1 ABF3-overexpressing t... 224 4e-056
dbj|AP004687.2| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
dbj|AP003458.4| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
gb|AACV01013289.1| Oryza sativa (japonica cultivar-group) c... 72 3e-010
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 72 3e-010
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
gb|AACV01013292.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
gb|AQ865082.1|AQ865082 nbeb0024P19f CUGI Rice BAC Library (... 50 0.001
dbj|AK108759.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|XM_467940.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
dbj|AK060562.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AP005866.2| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AACV01018151.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|XM_481719.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
dbj|AK073690.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK106286.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK106468.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK110929.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
gb|AACV01009865.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
ref|XM_462666.1| Oryza sativa (japonica cultivar-group), p... 44 0.079
ref|XM_462667.1| Oryza sativa (japonica cultivar-group), p... 44 0.079
ref|NT_107104.1| Oryza sativa genomic DNA, chromosome 4, BA... 44 0.079
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromoso... 44 0.079
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|CB651638.1|CB651638 OSJNEb16K20.r OSJNEb Oryza sativa (j... 42 0.31
dbj|AK060517.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK103086.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AP004770.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP004771.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|AACV01003870.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.31
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
>gb|CB641394.1|CB641394 OSJNEb01A04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01A04 3', mRNA sequence
Length = 788
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 257 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 316
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 317 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 376
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 377 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 436
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 437 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 496
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 556
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 557 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 616
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 617 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 676
>gb|CB652815.1|CB652815 OSJNEc03D13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03D13 3', mRNA sequence
Length = 790
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 191 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 250
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 251 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 310
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 311 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 370
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 371 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 430
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 490
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 491 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 550
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 551 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 610
>gb|CB652849.1|CB652849 OSJNEc03E13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03E13 3', mRNA sequence
Length = 781
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 178 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 237
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 238 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 297
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 298 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 357
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 358 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 417
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 418 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 477
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 478 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 537
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 538 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 597
>gb|CB652907.1|CB652907 OSJNEc03G13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03G13 3', mRNA sequence
Length = 711
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 138 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 197
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 198 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 257
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 258 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 317
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 318 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 377
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 378 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 437
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 438 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 497
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 498 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 557
>dbj|AK072854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138A15, full
insert sequence
Length = 2145
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1914 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 1855
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 1854 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 1795
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 1794 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 1735
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 1734 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 1675
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1674 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 1615
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1614 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 1555
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 1554 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 1495
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0486G03
Length = 146713
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 122736 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 122677
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 122676 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 122617
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 122616 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 122557
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 122556 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 122497
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 122496 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 122437
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 122436 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 122377
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 122376 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 122317
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 133980 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 133932
>gb|AACV01005462.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005462, whole
genome shotgun sequence
Length = 35536
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 15848 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 15907
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 15908 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 15967
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 15968 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 16027
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 16028 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 16087
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16088 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 16147
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 16148 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 16207
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 16208 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 16267
>ref|XM_467938.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2146
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1915 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 1856
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 1855 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 1796
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 1795 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 1736
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 1735 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 1676
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1675 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 1616
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1615 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 1556
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 1555 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 1496
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 7351079 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 7351020
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 7351019 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 7350960
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 7350959 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 7350900
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 7350899 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 7350840
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7350839 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 7350780
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 7350779 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 7350720
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 7350719 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 7350660
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 7362323 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 7362275
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0539D10
Length = 158691
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 30093 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 30034
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 30033 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 29974
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 29973 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 29914
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 29913 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 29854
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29853 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 29794
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 29793 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 29734
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 29733 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 29674
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 41337 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 41289
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 18765176 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 18765117
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 18765116 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 18765057
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 18765056 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 18764997
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 18764996 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 18764937
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 18764936 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 18764877
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 18764876 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 18764817
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 18764816 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 18764757
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 18793668 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 18793620
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 32218240 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 32218181
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 32218180 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 32218121
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 32218120 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 32218061
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 32218060 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 32218001
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 32218000 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 32217941
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 32217940 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 32217881
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 32217880 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 32217821
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 32246732 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 32246684
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 359 cgcgacgtagccgaaggtgga 379
|||||||||||||||||||||
Sbjct: 10096318 cgcgacgtagccgaaggtgga 10096338
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 32186080 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 32186021
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 32186020 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 32185961
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 32185960 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 32185901
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 32185900 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 32185841
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 32185840 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 32185781
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 32185780 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 32185721
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 32185720 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 32185661
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 32197324 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 32197276
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 359 cgcgacgtagccgaaggtgga 379
|||||||||||||||||||||
Sbjct: 10087805 cgcgacgtagccgaaggtgga 10087825
>gb|CB640020.1|CB640020 OSJNEa12P02.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa12P02 5', mRNA sequence
Length = 536
Score = 460 bits (232), Expect = e-127
Identities = 374/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 457 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 398
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 397 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 338
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| ||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 337 gcacggctccaccgacgtcgacttgacgcacgccacctccgacctctccttgtcccagtc 278
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 277 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 218
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 217 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 158
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 157 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 98
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 97 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 38
>gb|CB641473.1|CB641473 OSJNEb01C06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01C06 3', mRNA sequence
Length = 827
Score = 460 bits (232), Expect = e-127
Identities = 374/420 (89%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 254 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 313
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 314 gacggtggccgcgtcgacctccttcttggccctgcacgaaaggatcggcggcgagtggag 373
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 374 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 433
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 434 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 493
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 494 cgaccaggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 553
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 554 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 613
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 614 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 673
>gb|CB655512.1|CB655512 OSJNEc09A08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09A08 3', mRNA sequence
Length = 786
Score = 452 bits (228), Expect = e-125
Identities = 373/420 (88%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 217 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 276
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| | ||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 277 gacggtggccgcgtcgacctccttcttggccctgcacgagaggatcggcggcgagtggag 336
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||| ||
Sbjct: 337 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccaatc 396
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 397 cggccggagcaggatccacggcttgacgccggcgaagctgtaggccacgtacccgaacgt 456
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 457 cgaccaagcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgc 516
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 517 cttctggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacac 576
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
||| |||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 577 cgcgacgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 636
>gb|CO435953.1|CO435953 OsMR587 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 939
Score = 280 bits (141), Expect = 8e-073
Identities = 213/236 (90%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 321 cggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggtggac 380
|||| ||||||||||||||| ||||||| ||||||||| || ||||| ||||| || |||
Sbjct: 665 cggagcaggatccacggcttgacgccggngaagctgtaggccacgtacccgaacgtcgac 606
Query: 381 caggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgccttc 440
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 605 caggcgctcatggcgatcttgtcgcagtagctgagcagatagatctcggccagcgccttc 546
Query: 441 tggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacaccgcc 500
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 545 tggttgtgctcgttggacgtgtactgctgctgctcctcgtggctcggctggtacaccgcg 486
Query: 501 acgatctccccactcttggtggggctctcgtagtacatgcc-gggatcttctcgta 555
|||||||| ||| ||||||| || ||||||||||||| || |||||||||||||
Sbjct: 485 acgatctcgccagtcttggttggattctcgtagtacatcccacggatcttctcgta 430
>gb|CF312679.1|CF312679 ABF--08-I14.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-I14, mRNA sequence
Length = 426
Score = 224 bits (113), Expect = 4e-056
Identities = 188/213 (88%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 214 ttagctatcgaacaacttgagaccgaacccgacatcctcgcagtgccgaacgtacggctt 273
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 274 gacagtggccgcgtcgacctccttcttggccctgcacgaaaggatcggcggcgagtggag 333
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
|||||||||||| ||||| |||| ||||||||| || || || ||||| ||| ||||||
Sbjct: 334 gcacggctccaccgacgtcgacctgacgcacgccacctccgacctctccttgtcccagtc 393
Query: 317 cggccggatcaggatccacggcttcacgccggc 349
|||||||| ||||||||||||||| ||||||||
Sbjct: 394 cggccggagcaggatccacggcttgacgccggc 426
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0021C04
Length = 162115
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 108624 agctgagcaggtagatctcggcgagcgccttctggttgtg 108663
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 137573 cggcggcgagtgcaggcacggctccaccgacg 137604
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 108682 ctgcttctcctcgtggctcggctggaacac 108711
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 137740 agctgagcaggtagatctccgccag 137764
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 115604 ctgctgctcctcgtggctcggctgg 115628
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0701E03
Length = 183245
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 32006 agctgagcaggtagatctcggcgagcgccttctggttgtg 32045
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 60955 cggcggcgagtgcaggcacggctccaccgacg 60986
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 32064 ctgcttctcctcgtggctcggctggaacac 32093
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 61122 agctgagcaggtagatctccgccag 61146
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 38986 ctgctgctcctcgtggctcggctgg 39010
>gb|AACV01013289.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013289, whole
genome shotgun sequence
Length = 12881
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 12722 agctgagcaggtagatctcggcgagcgccttctggttgtg 12683
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 12664 ctgcttctcctcgtggctcggctggaacac 12635
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 5742 ctgctgctcctcgtggctcggctgg 5718
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 1408057 agctgagcaggtagatctcggcgagcgccttctggttgtg 1408096
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 1437006 cggcggcgagtgcaggcacggctccaccgacg 1437037
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 1408115 ctgcttctcctcgtggctcggctggaacac 1408144
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 1437173 agctgagcaggtagatctccgccag 1437197
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 1415037 ctgctgctcctcgtggctcggctgg 1415061
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 5633988 agctgagcaggtagatctcggcgagcgccttctggttgtg 5634027
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 5664027 cggcggcgagtgcaggcacggctccaccgacg 5664058
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 5634046 ctgcttctcctcgtggctcggctggaacac 5634075
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 5664194 agctgagcaggtagatctccgccag 5664218
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 5640968 ctgctgctcctcgtggctcggctgg 5640992
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 5633988 agctgagcaggtagatctcggcgagcgccttctggttgtg 5634027
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 5664027 cggcggcgagtgcaggcacggctccaccgacg 5664058
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 5634046 ctgcttctcctcgtggctcggctggaacac 5634075
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 5664194 agctgagcaggtagatctccgccag 5664218
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 5640968 ctgctgctcctcgtggctcggctgg 5640992
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 71.9 bits (36), Expect = 3e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 5716477 agctgagcaggtagatctcggcgagcgccttctggttgtg 5716516
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 5745426 cggcggcgagtgcaggcacggctccaccgacg 5745457
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctggaacac 496
||||| |||||||||||| |||||||||||
Sbjct: 5716535 ctgcttctcctcgtggctcggctggaacac 5716564
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 5745593 agctgagcaggtagatctccgccag 5745617
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 467 ctgctgctcctcgtggctgggctgg 491
|||||||||||||||||| ||||||
Sbjct: 5723457 ctgctgctcctcgtggctcggctgg 5723481
>gb|AACV01013292.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013292, whole
genome shotgun sequence
Length = 11757
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
||||||||||||||||||||||||||| ||||
Sbjct: 7411 cggcggcgagtgcaggcacggctccaccgacg 7380
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 409 agctgagcaggtagatctcggccag 433
||||||||||||||||||| |||||
Sbjct: 7244 agctgagcaggtagatctccgccag 7220
>gb|AQ865082.1|AQ865082 nbeb0024P19f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0024P19f, DNA sequence
Length = 755
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 294 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 342
>dbj|AK108759.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G04, full
insert sequence
Length = 1388
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 1097 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 1049
>gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005463, whole
genome shotgun sequence
Length = 12222
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 9578 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 9626
>ref|XM_467940.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1388
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 401 gtcgcagtagctgagcaggtagatctcggccagcgccttctggttgtgg 449
||||||| |||| |||||||| |||||||||||||| ||||||||||
Sbjct: 1097 gtcgcagaagctcagcaggtatatctcggccagcgcgcgctggttgtgg 1049
>dbj|AK060562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G05, full
insert sequence
Length = 1926
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 1593 gatctccgccagcgccttctggttgtgg 1566
>dbj|AP005866.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0076O03
Length = 140823
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 102886 gatctccgccagcgccttctggttgtgg 102859
>gb|AACV01018151.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018151, whole
genome shotgun sequence
Length = 48663
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 32723 gatctccgccagcgccttctggttgtgg 32750
>ref|XM_481719.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1926
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 1593 gatctccgccagcgccttctggttgtgg 1566
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 14732270 gatctccgccagcgccttctggttgtgg 14732243
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 6201700 gatctccgccagcgccttctggttgtgg 6201673
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 13803706 gatctccgccagcgccttctggttgtgg 13803679
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 422 gatctcggccagcgccttctggttgtgg 449
|||||| |||||||||||||||||||||
Sbjct: 14970357 gatctccgccagcgccttctggttgtgg 14970330
>dbj|AK073690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055I24, full
insert sequence
Length = 2067
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 1504 atctcggcgagcgccttctggttgtg 1479
>dbj|AK106286.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A10, full
insert sequence
Length = 1629
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 267 atctcggcgagcgccttctggttgtg 292
>dbj|AK106468.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H08, full
insert sequence
Length = 1252
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 438 atctcggcgagcgccttctggttgtg 463
>dbj|AK110929.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D11, full
insert sequence
Length = 2078
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 1650 atctcggcgagcgccttctggttgtg 1625
>gb|AACV01009865.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009865, whole
genome shotgun sequence
Length = 39964
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 28511 atctcggcgagcgccttctggttgtg 28486
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 24356 atctcggcgagcgccttctggttgtg 24331
>ref|XM_462666.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1743
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 1463 atctcggcgagcgccttctggttgtg 1438
>ref|XM_462667.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1749
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 1469 atctcggcgagcgccttctggttgtg 1444
>ref|NT_107104.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
complete sequence
Length = 147214
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 111478 atctcggcgagcgccttctggttgtg 111503
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 107323 atctcggcgagcgccttctggttgtg 107348
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027
genomic scaffold, whole genome shotgun sequence
Length = 13167135
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 303937 atctcggcgagcgccttctggttgtg 303962
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 299782 atctcggcgagcgccttctggttgtg 299807
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 19448036 atctcggcgagcgccttctggttgtg 19448061
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 19443881 atctcggcgagcgccttctggttgtg 19443906
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
complete sequence
Length = 147214
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 111478 atctcggcgagcgccttctggttgtg 111503
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 107323 atctcggcgagcgccttctggttgtg 107348
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 22360574 atctcggcgagcgccttctggttgtg 22360599
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 423 atctcggccagcgccttctggttgtg 448
|||||||| |||||||||||||||||
Sbjct: 22356419 atctcggcgagcgccttctggttgtg 22356444
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 709,047
Number of Sequences: 438736
Number of extensions: 709047
Number of successful extensions: 19636
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18640
Number of HSP's gapped (non-prelim): 996
length of query: 555
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 534
effective length of database: 2,791,206,460
effective search space: 1490504249640
effective search space used: 1490504249640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)