BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB681891.1|CB681891 OSJNEf08K06.f OSJNEf Oryza sativa (j... 287 5e-075
gb|CB681892.1|CB681892 OSJNEf08K06.r OSJNEf Oryza sativa (j... 287 5e-075
dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA... 287 5e-075
gb|CF295085.1|CF295085 30DGS--04-N18.g1 Rice leaf plasmid c... 198 3e-048
dbj|AP005568.3| Oryza sativa (japonica cultivar-group) geno... 178 3e-042
gb|AACV01020023.1| Oryza sativa (japonica cultivar-group) c... 178 3e-042
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 178 3e-042
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 178 3e-042
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 178 3e-042
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 178 3e-042
dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
gb|AU095100.1|AU095100 AU095100 Rice immature leaf includin... 100 2e-018
dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA... 100 2e-018
gb|AACV01020022.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
dbj|AK099964.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AP005651.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP004024.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP003514.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01004048.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01009743.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01013205.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.11
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromoso... 44 0.11
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AU094139.1|AU094139 AU094139 Rice panicle at flowering s... 42 0.45
dbj|AP005872.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 42 0.45
dbj|AP003565.2| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AACV01014695.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01019806.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|XM_450702.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.45
ref|NT_107082.1| Oryza sativa (japonica cultivar-group) 42 0.45
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
>gb|CB681891.1|CB681891 OSJNEf08K06.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08K06 5', mRNA sequence
Length = 761
Score = 287 bits (145), Expect = 5e-075
Identities = 285/332 (85%)
Strand = Plus / Minus
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
||||||||||||||||| | ||||||||| || | | ||| |||| || | |||||||
Sbjct: 421 gctttgccccacagcacgatgtacagcccggcaacaatggccgtcgccccgaacaagctg 362
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
|||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||
Sbjct: 361 ccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtgcag 302
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 301 agcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgcagg 242
Query: 473 tagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcgaagagc 532
|||||||| ||||| ||||| |||||||| | ||| | |||||| ||||||||| ||
Sbjct: 241 tagaacgtcacgcctgacccaaacacgccggcgaaaaggcagcatccgagctcgaatagg 182
Query: 533 gagtggatcctccaggcgctggggtccggcaggaggaaggagacgagcagcgcggactgg 592
||||||||| |||||||| || |||||||| ||||||||||||||||| ||| |||||
Sbjct: 181 gagtggatcttccaggcgttgatgtccggcacgaggaaggagacgagcaccgccgactgc 122
Query: 593 agcgtggacaggacgcacatccacgccgacag 624
||||| ||||||| ||||||||||||||||||
Sbjct: 121 agcgtcgacaggaagcacatccacgccgacag 90
>gb|CB681892.1|CB681892 OSJNEf08K06.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08K06 3', mRNA sequence
Length = 794
Score = 287 bits (145), Expect = 5e-075
Identities = 285/332 (85%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
||||||||||||||||| | ||||||||| || | | ||| |||| || | |||||||
Sbjct: 390 gctttgccccacagcacgatgtacagcccggcaacaatggccgtcgccccgaacaagctg 449
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
|||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||
Sbjct: 450 ccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtgcag 509
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 510 agcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgcagg 569
Query: 473 tagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcgaagagc 532
|||||||| ||||| ||||| |||||||| | ||| | |||||| ||||||||| ||
Sbjct: 570 tagaacgtcacgcctgacccaaacacgccggcgaaaaggcagcatccgagctcgaatagg 629
Query: 533 gagtggatcctccaggcgctggggtccggcaggaggaaggagacgagcagcgcggactgg 592
||||||||| |||||||| || |||||||| ||||||||||||||||| ||| |||||
Sbjct: 630 gagtggatcttccaggcgttgatgtccggcacgaggaaggagacgagcaccgccgactgc 689
Query: 593 agcgtggacaggacgcacatccacgccgacag 624
||||| ||||||| ||||||||||||||||||
Sbjct: 690 agcgtcgacaggaagcacatccacgccgacag 721
>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full
insert sequence
Length = 3713
Score = 287 bits (145), Expect = 5e-075
Identities = 285/332 (85%)
Strand = Plus / Minus
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
||||||||||||||||| | ||||||||| || | | ||| |||| || | |||||||
Sbjct: 3344 gctttgccccacagcacgatgtacagcccggcaacaatggccgtcgccccgaacaagctg 3285
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
|||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||
Sbjct: 3284 ccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtgcag 3225
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 3224 agcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgcagg 3165
Query: 473 tagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcgaagagc 532
|||||||| ||||| ||||| |||||||| | ||| | |||||| ||||||||| ||
Sbjct: 3164 tagaacgtcacgcctgacccaaacacgccggcgaaaaggcagcatccgagctcgaatagg 3105
Query: 533 gagtggatcctccaggcgctggggtccggcaggaggaaggagacgagcagcgcggactgg 592
||||||||| |||||||| || |||||||| ||||||||||||||||| ||| |||||
Sbjct: 3104 gagtggatcttccaggcgttgatgtccggcacgaggaaggagacgagcaccgccgactgc 3045
Query: 593 agcgtggacaggacgcacatccacgccgacag 624
||||| ||||||| ||||||||||||||||||
Sbjct: 3044 agcgtcgacaggaagcacatccacgccgacag 3013
>gb|CF295085.1|CF295085 30DGS--04-N18.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-N18, mRNA sequence
Length = 601
Score = 198 bits (100), Expect = 3e-048
Identities = 218/258 (84%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
||||||||||||||||| | ||||||||| || | | ||| |||| || | |||||||
Sbjct: 336 gctttgccccacagcacgatgtacagcccggcaacaatggccgtcgccccgaacaagctg 395
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
|||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||||
Sbjct: 396 ccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtgcan 455
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| ||||||||||||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 456 agcgggttgaacatggcggagtaaagagggcccctgaccgagatgcaccacgactgcagg 515
Query: 473 tagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcgaagagc 532
|||||||| ||||| ||||| |||||||| | ||| | |||||| ||||||||| ||
Sbjct: 516 tagaacgtcacgcctgacccaaacacgccggcgaaaaggcagcatccgagctcgaatagg 575
Query: 533 gagtggatcctccaggcg 550
||||||||| ||||||||
Sbjct: 576 gagtggatcttccaggcg 593
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1299_A11
Length = 160099
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 59889 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 59948
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 59949 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 60008
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 60009 aggtagaacgtcacgcctgacccaaacacgccc 60041
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 60155 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 60214
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 60215 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 60259
Score = 99.6 bits (50), Expect = 2e-018
Identities = 118/141 (83%)
Strand = Plus / Plus
Query: 358 gtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcagagcgg 417
||||||||| || |||| ||||||||||||| | |||||||| ||||||||||| ||
Sbjct: 45970 gtgcagctcctcctggagaacggcggcggcgacgatggtggtgaccacggtgcagacagg 46029
Query: 418 tttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaa 477
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 46030 ggtgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaa 46089
Query: 478 cgtgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 46090 gcagacgcctgacccaaacac 46110
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 53143 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 53202
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 53203 aagtgcaccacgactgcaggtagaagttgacgcc 53236
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 53359 ggagagttcgaagagcgagtggatcttccaggcg 53392
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 46240 gagagctcgaagagcgagtggatcttcca 46268
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 59750 gctttgccccacagcacgatgtacagccc 59778
>gb|AACV01020023.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020023, whole
genome shotgun sequence
Length = 19837
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 8468 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 8527
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 8528 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 8587
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 8588 aggtagaacgtcacgcctgacccaaacacgccc 8620
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 8734 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 8793
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 8794 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 8838
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 1722 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 1781
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 1782 aagtgcaccacgactgcaggtagaagttgacgcc 1815
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 1938 ggagagttcgaagagcgagtggatcttccaggcg 1971
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 8329 gctttgccccacagcacgatgtacagccc 8357
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 1102400 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 1102459
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 1102460 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 1102519
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 1102520 aggtagaacgtcacgcctgacccaaacacgccc 1102552
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 1102666 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 1102725
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 1102726 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 1102770
Score = 99.6 bits (50), Expect = 2e-018
Identities = 118/141 (83%)
Strand = Plus / Plus
Query: 358 gtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcagagcgg 417
||||||||| || |||| ||||||||||||| | |||||||| ||||||||||| ||
Sbjct: 1088481 gtgcagctcctcctggagaacggcggcggcgacgatggtggtgaccacggtgcagacagg 1088540
Query: 418 tttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaa 477
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 1088541 ggtgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaa 1088600
Query: 478 cgtgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 1088601 gcagacgcctgacccaaacac 1088621
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 1095654 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 1095713
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 1095714 aagtgcaccacgactgcaggtagaagttgacgcc 1095747
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 1095870 ggagagttcgaagagcgagtggatcttccaggcg 1095903
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 1088751 gagagctcgaagagcgagtggatcttcca 1088779
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 1102261 gctttgccccacagcacgatgtacagccc 1102289
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 4729658 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 4729717
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 4729718 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 4729777
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 4729778 aggtagaacgtcacgcctgacccaaacacgccc 4729810
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 4729924 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 4729983
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 4729984 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 4730028
Score = 71.9 bits (36), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 420 tgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaacg 479
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 4715891 tgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaagc 4715950
Query: 480 tgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 4715951 agacgcctgacccaaacac 4715969
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 4722912 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 4722971
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 4722972 aagtgcaccacgactgcaggtagaagttgacgcc 4723005
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 4723128 ggagagttcgaagagcgagtggatcttccaggcg 4723161
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 4716099 gagagctcgaagagcgagtggatcttcca 4716127
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 4729519 gctttgccccacagcacgatgtacagccc 4729547
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 1709765 ggcgacggcgaacacggtggtgaacacgg 1709737
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 14203469 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 14203528
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 14203529 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 14203588
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 14203589 aggtagaacgtcacgcctgacccaaacacgccc 14203621
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 14203735 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 14203794
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 14203795 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 14203839
Score = 71.9 bits (36), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 420 tgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaacg 479
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 14189702 tgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaagc 14189761
Query: 480 tgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 14189762 agacgcctgacccaaacac 14189780
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 14196723 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 14196782
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 14196783 aagtgcaccacgactgcaggtagaagttgacgcc 14196816
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 14196939 ggagagttcgaagagcgagtggatcttccaggcg 14196972
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 14189910 gagagctcgaagagcgagtggatcttcca 14189938
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 14203330 gctttgccccacagcacgatgtacagccc 14203358
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 11183576 ggcgacggcgaacacggtggtgaacacgg 11183548
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 178 bits (90), Expect = 3e-042
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
||||||| ||||||||| ||| |||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 15410597 ctgccgatgtgcagctcctcgtggaggaaggcggcggcgacgacggtggcgatgacggtg 15410656
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 15410657 cagagcgggttgaacatggcggagtagagagggcccctgaccgagatgcaccacgactgc 15410716
Query: 470 aggtagaacgtgacgccggacccgaacacgccc 502
||||||||||| ||||| ||||| |||||||||
Sbjct: 15410717 aggtagaacgtcacgcctgacccaaacacgccc 15410749
Score = 113 bits (57), Expect = 1e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||| || ||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 15410863 gagctcgaatagggagtggatcttccaggcgttgatgtccggcacgaggaaggagacgag 15410922
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
|| ||| ||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 15410923 caccgccgactgcagcgtcgacaggaagcacatccacgccgacag 15410967
Score = 99.6 bits (50), Expect = 2e-018
Identities = 118/141 (83%)
Strand = Plus / Plus
Query: 358 gtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcagagcgg 417
||||||||| || |||| ||||||||||||| | |||||||| ||||||||||| ||
Sbjct: 15396678 gtgcagctcctcctggagaacggcggcggcgacgatggtggtgaccacggtgcagacagg 15396737
Query: 418 tttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaa 477
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 15396738 ggtgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaa 15396797
Query: 478 cgtgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 15396798 gcagacgcctgacccaaacac 15396818
Score = 61.9 bits (31), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 393 cggtggtgatcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacgg 452
||||||||| ||| ||||||| || | |||||||| | |||||| || |||||||| |
Sbjct: 15403851 cggtggtgagcaccgtgcagacgggcgtaaacatggccgggtagagaggccccctcaccg 15403910
Query: 453 agatgcaccacgactgcaggtagaacgtgacgcc 486
| |||||||||||||||||||||| |||||||
Sbjct: 15403911 aagtgcaccacgactgcaggtagaagttgacgcc 15403944
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 517 ggagagctcgaagagcgagtggatcctccaggcg 550
|||||| |||||||||||||||||| ||||||||
Sbjct: 15404067 ggagagttcgaagagcgagtggatcttccaggcg 15404100
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 15396948 gagagctcgaagagcgagtggatcttcca 15396976
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 15410458 gctttgccccacagcacgatgtacagccc 15410486
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 12312777 ggcgacggcgaacacggtggtgaacacgg 12312749
>dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H10, full
insert sequence
Length = 1716
Score = 133 bits (67), Expect = 2e-028
Identities = 171/206 (83%)
Strand = Plus / Minus
Query: 341 cccagcaagctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtg 400
|||| |||||| || | ||||||||| || |||| ||||||||||||| | |||||||
Sbjct: 1287 cccatcaagcttccaatgtgcagctcctcctggagaacggcggcggcgacgatggtggtg 1228
Query: 401 atcacggtgcagagcggtttgaacatggcggagtagagcggncccctcacggagatgcac 460
| ||||||||||| || |||||||||| |||||||| || |||||||| |||||||||
Sbjct: 1227 accacggtgcagacaggggtgaacatggccgagtagaggggccccctcaccgagatgcac 1168
Query: 461 cacgactgcaggtagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggag 520
|| || ||||||||||| |||||| ||||| ||||| || | |||| || ||| |||
Sbjct: 1167 catgattgcaggtagaagcagacgcctgacccaaacactccggcgaaggcgtagctcgag 1108
Query: 521 agctcgaagagcgagtggatcctcca 546
||||||||||||||||||||| ||||
Sbjct: 1107 agctcgaagagcgagtggatcttcca 1082
>gb|AU095100.1|AU095100 AU095100 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E51228, mRNA sequence
Length = 513
Score = 99.6 bits (50), Expect = 2e-018
Identities = 84/94 (89%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 346 caagctgccgacgtgcagctcttcgcgg-aggacggcggcggcgaacacggtggtgatca 404
||||||||||| ||||||||| ||| || |||| ||||||||||| ||||||| ||| |
Sbjct: 98 caagctgccgatgtgcagctcctcgtgggaggaaggcggcggcgacgacggtggcgatga 39
Query: 405 cggtgcagagcggtttgaacatggcggagtagag 438
||||||||||||| ||||||||||||||||||||
Sbjct: 38 cggtgcagagcgggttgaacatggcggagtagag 5
>dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159I18, full
insert sequence
Length = 1205
Score = 99.6 bits (50), Expect = 2e-018
Identities = 118/141 (83%)
Strand = Plus / Minus
Query: 358 gtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcagagcgg 417
||||||||| || |||| ||||||||||||| | |||||||| ||||||||||| ||
Sbjct: 1162 gtgcagctcctcctggagaacggcggcggcgacgatggtggtgaccacggtgcagacagg 1103
Query: 418 tttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaa 477
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 1102 ggtgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaa 1043
Query: 478 cgtgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 1042 gcagacgcctgacccaaacac 1022
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 892 gagagctcgaagagcgagtggatcttcca 864
>gb|AACV01020022.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020022, whole
genome shotgun sequence
Length = 5250
Score = 71.9 bits (36), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 420 tgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcaggtagaacg 479
|||||||||| |||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 5250 tgaacatggccgagtagaggggccccctcaccgagatgcaccatgattgcaggtagaagc 5191
Query: 480 tgacgccggacccgaacac 498
|||||| ||||| |||||
Sbjct: 5190 agacgcctgacccaaacac 5172
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 518 gagagctcgaagagcgagtggatcctcca 546
|||||||||||||||||||||||| ||||
Sbjct: 5042 gagagctcgaagagcgagtggatcttcca 5014
>dbj|AK099964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126L24, full
insert sequence
Length = 1776
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 1489 cgctttgccccacagcaccatgtaca 1464
>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0086N11
Length = 146185
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 41875 ccggcaggaggaaggagacgag 41854
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1134_B09
Length = 105247
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 90657 ccggcaggaggaaggagacgag 90636
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0698A06
Length = 156514
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 74774 gaacacggtggtgatcacggtg 74795
>gb|AACV01004048.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004048, whole
genome shotgun sequence
Length = 20023
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 10720 ccggcaggaggaaggagacgag 10699
>gb|AACV01009743.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009743, whole
genome shotgun sequence
Length = 20090
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 1889 cgctttgccccacagcaccatgtaca 1914
>gb|AACV01013205.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013205, whole
genome shotgun sequence
Length = 5189
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 2613 gaacacggtggtgatcacggtg 2592
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 403755 gaacacggtggtgatcacggtg 403776
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 6726550 ccggcaggaggaaggagacgag 6726529
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 4540239 gaacacggtggtgatcacggtg 4540260
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 10679910 cgctttgccccacagcaccatgtaca 10679885
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 12668828 ccggcaggaggaaggagacgag 12668807
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 4540239 gaacacggtggtgatcacggtg 4540260
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 25354654 cggcggcggcgaacacggtgg 25354634
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 18027272 cgctttgccccacagcaccatgtaca 18027247
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 12668828 ccggcaggaggaaggagacgag 12668807
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
complete sequence
Length = 96079
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 14590 cgctttgccccacagcaccatgtaca 14565
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 558 ccggcaggaggaaggagacgag 579
||||||||||||||||||||||
Sbjct: 12693598 ccggcaggaggaaggagacgag 12693577
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 cgctttgccccacagcaccacgtaca 317
|||||||||||||||||||| |||||
Sbjct: 20911367 cgctttgccccacagcaccatgtaca 20911342
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 388 gaacacggtggtgatcacggtg 409
||||||||||||||||||||||
Sbjct: 4712175 gaacacggtggtgatcacggtg 4712196
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 26312750 cggcggcggcgaacacggtgg 26312730
>gb|AU094139.1|AU094139 AU094139 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2890, mRNA sequence
Length = 357
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 293 gctttgccccacagcaccacgtacagccc 321
||||||||||||||||| | |||||||||
Sbjct: 53 gctttgccccacagcacgatgtacagccc 25
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1168F12
Length = 141524
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 96331 ggcgacggcgaacacggtggtgaacacgg 96303
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 3778235 cggcggcggcgaacacggtgg 3778215
>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0085J13
Length = 130185
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 10477 cggcggcggcgaacacggtgg 10457
>gb|AACV01014695.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014695, whole
genome shotgun sequence
Length = 27873
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 6649 cggcggcggcgaacacggtgg 6669
>gb|AACV01019806.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019806, whole
genome shotgun sequence
Length = 56351
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 40853 ggcgacggcgaacacggtggtgaacacgg 40881
>ref|XM_450702.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1563
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 771 ggcgacggcgaacacggtggtgaacacgg 743
>ref|NT_107082.1| Oryza sativa (japonica cultivar-group)
Length = 2185602
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ggcggcggcgaacacggtggtgatcacgg 407
|||| |||||||||||||||||| |||||
Sbjct: 946465 ggcgacggcgaacacggtggtgaacacgg 946437
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 cggcggcggcgaacacggtgg 398
|||||||||||||||||||||
Sbjct: 7655917 cggcggcggcgaacacggtgg 7655897
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,612,724
Number of Sequences: 438736
Number of extensions: 1612724
Number of successful extensions: 16503
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15901
Number of HSP's gapped (non-prelim): 601
length of query: 790
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 769
effective length of database: 2,791,206,460
effective search space: 2146437767740
effective search space used: 2146437767740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)