BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA... 446 e-123
gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Ni... 347 4e-093
dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chro... 157 9e-036
dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chro... 157 9e-036
gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) c... 157 9e-036
dbj|AP007223.2| Oryza sativa (japonica cultivar-group) geno... 157 9e-036
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 157 9e-036
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 157 9e-036
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 157 9e-036
gb|AZ129915.1|AZ129915 OSJNBb0080B16r CUGI Rice BAC Library... 137 8e-030
gb|AQ574531.1|AQ574531 nbxb0085L11f CUGI Rice BAC Library O... 109 2e-021
dbj|AP006533.3| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
>dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full
insert sequence
Length = 1543
Score = 446 bits (225), Expect = e-123
Identities = 336/373 (90%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 1138 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 1079
Query: 308 tagccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttc 367
||||||||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1078 tagccctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtga 1019
Query: 368 acagagcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgt 427
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1018 acaaagtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagt 959
Query: 428 aacgtcctagatactaaacatacggaaactgttgttcctcaaagcaaccaagctagccac 487
||| |||| | || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 958 aacatcctcattgctgaacatacggaaactgttgttcctcaaggcaaccaagcttgccac 899
Query: 488 cacgtcagctgataaagcataaattggcccatatgcatgaagaaagtattctgatccgag 547
||| || ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 898 cacatcggctgataaagcgtaaatgggcccatatgcatgaaggaagtattctgatccgag 839
Query: 548 taagaaggattggggctcataccatttcaacttaggatcagtaaaaacaggccccttctt 607
|| |||||||| |||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 838 caaaaaggattgtggctcataccatttcagctttgggtcagtaaaaacaggccccttctt 779
Query: 608 catgcatccaatg 620
|||||||||||||
Sbjct: 778 catgcatccaatg 766
>gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20018_1A, mRNA sequence
Length = 352
Score = 347 bits (175), Expect = 4e-093
Identities = 259/287 (90%)
Strand = Plus / Minus
Query: 334 aaacagcaactgaagactccgtgcagtcaggttcacagagcgcatgtgtgttctcatggt 393
||||||||| ||||||||| ||||| |||||| ||| || |||||||||||||||||||
Sbjct: 352 aaacagcaattgaagactctgtgcactcaggtgaacaaagtgcatgtgtgttctcatggt 293
Query: 394 tgacgttcatagcaagcatccacgatccaattgtaacgtcctagatactaaacatacgga 453
|||||||||||||||||||||| |||||||| ||||| |||| | || ||||||||||
Sbjct: 292 tgacgttcatagcaagcatccaggatccaatagtaacatcctcattgctgaacatacgga 233
Query: 454 aactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattg 513
|||||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 232 aactgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaatag 173
Query: 514 gcccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcataccatt 573
|||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 172 gcccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcataccatt 113
Query: 574 tcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 112 tcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 66
>dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1115_C07, ***
SEQUENCING IN PROGRESS ***
Length = 153595
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 120316 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 120257
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 120256 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 120197
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 120196 tcctcattgctgaacatacggaaactg 120170
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 119574 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 119515
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 119514 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 119460
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 118063 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 118011
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 120770 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 120711
Query: 308 tagccctg 315
||||||||
Sbjct: 120710 tagccctg 120703
>dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone B1160E02, ***
SEQUENCING IN PROGRESS ***
Length = 189953
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 141874 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 141815
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 141814 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 141755
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 141754 tcctcattgctgaacatacggaaactg 141728
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 141132 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 141073
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 141072 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 141018
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 139621 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 139569
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 142328 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 142269
Query: 308 tagccctg 315
||||||||
Sbjct: 142268 tagccctg 142261
>gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013060, whole
genome shotgun sequence
Length = 20070
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 7780 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 7839
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 7840 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 7899
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 7900 tcctcattgctgaacatacggaaactg 7926
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Plus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 8522 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 8581
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 8582 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 8636
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 10033 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 10085
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 7326 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 7385
Query: 308 tagccctg 315
||||||||
Sbjct: 7386 tagccctg 7393
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0046E09
Length = 146776
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 65581 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 65522
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 65521 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 65462
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 65461 tcctcattgctgaacatacggaaactg 65435
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 64839 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 64780
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 64779 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 64725
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 63328 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 63276
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 66035 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 65976
Query: 308 tagccctg 315
||||||||
Sbjct: 65975 tagccctg 65968
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 2800343 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 2800284
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 2800283 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 2800224
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 2800223 tcctcattgctgaacatacggaaactg 2800197
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 2799601 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 2799542
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 2799541 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 2799487
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 2798090 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 2798038
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 2800797 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 2800738
Query: 308 tagccctg 315
||||||||
Sbjct: 2800737 tagccctg 2800730
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 2800343 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 2800284
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 2800283 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 2800224
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 2800223 tcctcattgctgaacatacggaaactg 2800197
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 2799601 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 2799542
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 2799541 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 2799487
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 2798090 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 2798038
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 2800797 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 2800738
Query: 308 tagccctg 315
||||||||
Sbjct: 2800737 tagccctg 2800730
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 157 bits (79), Expect = 9e-036
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||| |||
Sbjct: 2905435 cctgaacattttggaatatcccaaacagcaattgaagactctgtgcactcaggtgaacaa 2905376
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 2905375 agtgcatgtgtgttctcatggttgacgttcatagcaagcatccaggatccaatagtaaca 2905316
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | || |||||||||||||||
Sbjct: 2905315 tcctcattgctgaacatacggaaactg 2905289
Score = 149 bits (75), Expect = 2e-033
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 2904693 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgataaagcgtaaataggc 2904634
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 2904633 ccatatgcatgaaggaagtattctgatccgagcaaaaaggattgtggctcatacc 2904579
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 2903182 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 2903130
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 248 tggaccacctgtgcattcttttctttgatgaagctctagcatttttacctctgggtggca 307
|||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 2905889 tggaccacctgtacattccttccttcgatgaagctccagcatctttacctccgggtggca 2905830
Query: 308 tagccctg 315
||||||||
Sbjct: 2905829 tagccctg 2905822
>gb|AZ129915.1|AZ129915 OSJNBb0080B16r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0080B16r, DNA
sequence
Length = 641
Score = 137 bits (69), Expect = 8e-030
Identities = 103/115 (89%)
Strand = Plus / Minus
Query: 456 ctgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaagcataaattggc 515
|||||||||||||| ||||||||||| |||||||| || ||||||| ||| ||||| |||
Sbjct: 283 ctgttgttcctcaaggcaaccaagcttgccaccacatcggctgatanagcgtaaataggc 224
Query: 516 ccatatgcatgaagaaagtattctgatccgagtaagaaggattggggctcatacc 570
|||||||||||||| ||||||||||||||||| | |||||||| ||||||||||
Sbjct: 223 ccatatgcatgaaggaagtattctgatccgagcanaaaggattgtggctcatacc 169
>gb|AQ574531.1|AQ574531 nbxb0085L11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0085L11f, DNA sequence
Length = 688
Score = 109 bits (55), Expect = 2e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 484 ccaccacgtcagctgataaagcataaattggcccatatgcatgaagaaagtattctgatc 543
||||||| || ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 1 ccaccacatcggctgataaagcgtaaataggcccatatgcatgaaggaagtattctgatc 60
Query: 544 cgagtaagaaggattggggctcatacc 570
|||| || |||||||| ||||||||||
Sbjct: 61 cgagcaaaaaggattgtggctcatacc 87
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0085L11
Length = 148142
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 495 gctgataaagcataaattggcccatatgcatgaagaaagtattctgatccgagtaagaag 554
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 148135 gctgataaagcgtaaataggcccatatgcatgaaggaagtattctgatccgagcaaaaag 148076
Query: 555 gattggggctcatacc 570
||||| ||||||||||
Sbjct: 148075 gattgtggctcatacc 148060
Score = 81.8 bits (41), Expect = 4e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 568 accatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaatg 620
||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 146663 accatttcagctttgggtcagtaaaaacaggccccttcttcatgcatccaatg 146611
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 810,318
Number of Sequences: 438736
Number of extensions: 810318
Number of successful extensions: 14396
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14263
Number of HSP's gapped (non-prelim): 124
length of query: 620
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 599
effective length of database: 2,791,206,460
effective search space: 1671932669540
effective search space used: 1671932669540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)