BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065485.1| Oryza sativa (japonica cultivar-group) cDNA... 551 e-154
emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC O... 347 4e-093
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 347 4e-093
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 347 4e-093
gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) c... 347 4e-093
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 347 4e-093
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 347 4e-093
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 347 4e-093
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 347 4e-093
gb|C26079.1|C26079 C26079 Rice callus cDNA Oryza sativa (ja... 315 1e-083
gb|CV723968.1|CV723968 root--05-G04.g1 Rice root lambda pha... 252 2e-064
gb|C72922.1|C72922 C72922 Rice panicle at flowering stage O... 194 4e-047
gb|CF324864.1|CF324864 JMT1--01-K21.g1 AtJMT-overexpressing... 167 8e-039
gb|C24789.2|C24789 C24789 Rice green shoot Oryza sativa (ja... 125 3e-026
gb|CA998815.1|CA998815 S345M_C07 Rice cold stress germinati... 107 6e-021
gb|CF321227.1|CF321227 HD--12-G14.b1 OsHDAC1-overexpressing... 96 2e-017
gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbar... 84 9e-014
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 84 9e-014
gb|AACV01006093.1| Oryza sativa (japonica cultivar-group) c... 84 9e-014
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 84 9e-014
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 84 9e-014
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 84 9e-014
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 84 9e-014
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 84 9e-014
gb|CB000004.1|CB000004 S345V_A05 Rice cold stress germinati... 60 1e-006
gb|CB638468.1|CB638468 OSJNEa06M20.f OSJNEa Oryza sativa (j... 58 5e-006
dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 58 5e-006
gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) c... 58 5e-006
ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hyp... 58 5e-006
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 58 5e-006
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 52 3e-004
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA 52 3e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AU225596.1|AU225596 AU225596 Oryza sativa Koshihikari pi... 50 0.001
dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chro... 50 0.001
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 50 0.001
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01010539.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|XM_474034.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromoso... 48 0.005
emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromoso... 48 0.005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AQ362208.1|AQ362208 nbxb0029P14f CUGI Rice BAC Library O... 44 0.081
>dbj|AK065485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003G01, full
insert sequence
Length = 2519
Score = 551 bits (278), Expect = e-154
Identities = 488/558 (87%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1148 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 1207
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 1208 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 1267
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 1268 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 1327
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 1328 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 1387
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 1388 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 1447
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 1448 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 1507
Query: 365 gctcaatcatattcgaatatacatgcctgagttgttcccaagcctcaacaaagtcgtatt 424
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct: 1508 gctcaatcatattcgaatatacttgcctgagttgttcccaaacctcaacaaagttgtatt 1567
Query: 425 tcttgatgatgatgttgttgtccagcatgacctatcaccactttgggatattgatctatc 484
|||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||||
Sbjct: 1568 tcttgatgatgacgttgttgtccagcgggacttgtcatcactttgggatattgatctagg 1627
Query: 485 tgggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaa 544
||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct: 1628 tgggaaggtaaatggagctgttgagacctgcagaggtggagatacttgggtgatgtccaa 1687
Query: 545 gaggttcaggaattattt 562
||||||||| ||||||||
Sbjct: 1688 gaggttcagaaattattt 1705
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 144767
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1302 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 1361
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 1362 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 1421
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 1422 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 1481
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 1482 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 1541
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 1542 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 1601
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 1602 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 1661
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 1662 gctcaatcatattcgaatatacttgcctgag 1692
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Plus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 2064 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 2123
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 2124 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 2183
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 2184 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 2232
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 176388
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 115516 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 115575
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 115576 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 115635
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 115636 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 115695
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 115696 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 115755
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 115756 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 115815
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 115816 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 115875
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 115876 gctcaatcatattcgaatatacttgcctgag 115906
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Plus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 116278 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 116337
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 116338 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 116397
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 116398 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 116446
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 143466 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 143407
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 143406 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 143347
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 143346 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 143287
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 143286 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 143227
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 143226 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 143167
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 143166 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 143107
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 143106 gctcaatcatattcgaatatacttgcctgag 143076
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 142704 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 142645
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 142644 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 142585
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 142584 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 142536
>gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025341, whole
genome shotgun sequence
Length = 39984
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 22127 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 22068
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 22067 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 22008
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 22007 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 21948
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 21947 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 21888
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 21887 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 21828
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 21827 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 21768
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 21767 gctcaatcatattcgaatatacttgcctgag 21737
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 21365 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 21306
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 21305 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 21246
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 21245 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 21197
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1008253 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 1008194
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 1008193 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 1008134
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 1008133 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 1008074
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 1008073 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 1008014
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 1008013 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 1007954
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 1007953 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 1007894
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 1007893 gctcaatcatattcgaatatacttgcctgag 1007863
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 1007491 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 1007432
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 1007431 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 1007372
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 1007371 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 1007323
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 20191899 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 20191840
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 20191839 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 20191780
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 20191779 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 20191720
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 20191719 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 20191660
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 20191659 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 20191600
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 20191599 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 20191540
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 20191539 gctcaatcatattcgaatatacttgcctgag 20191509
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 20191137 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 20191078
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 20191077 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 20191018
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 20191017 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 20190969
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 23971880 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 23971821
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 23971820 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 23971761
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 23971760 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 23971701
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 23971700 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 23971641
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 23971640 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 23971581
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 23971580 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 23971521
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 23971520 gctcaatcatattcgaatatacttgcctgag 23971490
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 23971118 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 23971059
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 23971058 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 23970999
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 23970998 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 23970950
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 347 bits (175), Expect = 4e-093
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 23900086 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 23900027
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 23900026 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 23899967
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 23899966 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 23899907
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 23899906 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 23899847
Query: 245 aactcagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaa 304
|||||||| | ||| |||| ||||| |||||||| || || ||| || |||||
Sbjct: 23899846 aactcagcacactgtcagaagtcgtttccatggaaatcaccttgcaagaaatagtgcagg 23899787
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 23899786 tgatagcccaagggtttttgctgccaagctgcaggcagggagtccaacatatacttcagt 23899727
Query: 365 gctcaatcatattcgaatatacatgcctgag 395
|||||||||||||||||||||| ||||||||
Sbjct: 23899726 gctcaatcatattcgaatatacttgcctgag 23899696
Score = 208 bits (105), Expect = 2e-051
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 394 agttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatg 453
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 23899324 agttgttcccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcggg 23899265
Query: 454 acctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttgagactt 513
|| | ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 23899264 acttgtcatcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacct 23899205
Query: 514 gcagaggtggagatagttgggtgatgtctaagaggttcaggaattattt 562
||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 23899204 gcagaggtggagatacttgggtgatgtccaagaggttcagaaattattt 23899156
>gb|C26079.1|C26079 C26079 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11593_2A, mRNA sequence
Length = 460
Score = 315 bits (159), Expect = 1e-083
Identities = 234/258 (90%), Gaps = 1/258 (0%)
Strand = Plus / Plus
Query: 305 tgatagcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgt 364
||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||
Sbjct: 48 tgatagcccaagggtttttgctgccaan-tgcaggcagggagtccaacatatacttcagt 106
Query: 365 gctcaatcatattcgaatatacatgcctgagttgttcccaagcctcaacaaagtcgtatt 424
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct: 107 gctcaatcatattcgaatatacttgcctgagttgttcccaaacctcaacaaagttgtatt 166
Query: 425 tcttgatgatgatgttgttgtccagcatgacctatcaccactttgggatattgatctatc 484
|||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||||
Sbjct: 167 tcttgatgatgacgttgttgtccagcgggacttgtcatcactttgggatattgatctagg 226
Query: 485 tgggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaa 544
||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct: 227 tgggaaggtaaatggagctgttgagacctgcagaggtggagatacttgggtgatgtccaa 286
Query: 545 gaggttcaggaattattt 562
||||||||| ||||||||
Sbjct: 287 gaggttcagaaattattt 304
>gb|CV723968.1|CV723968 root--05-G04.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--05-G04, mRNA sequence
Length = 482
Score = 252 bits (127), Expect = 2e-064
Identities = 238/275 (86%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 199 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 258
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 259 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 318
Query: 125 tcctgccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaa 184
|||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 319 tcctgctatgcactcatggtttgctttgaatactctttctcctgccattgttgaggtgaa 378
Query: 185 aggtgttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaataga 244
||||||||| |||||||||||||||||| |||||| || || || |||||| | |||||
Sbjct: 379 aggtgttcaccaatttgattggttaacaagagaaaacgtgccagttcttgaagctataga 438
Query: 245 aactcagcgcgctgccagagatcgttaccatggaa 279
|||||||| | ||| |||| ||||| ||||||||
Sbjct: 439 aactcagcacactgtcagaagtcgtttccatggaa 473
>gb|C72922.1|C72922 C72922 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2473_1A, mRNA sequence
Length = 347
Score = 194 bits (98), Expect = 4e-047
Identities = 146/162 (90%)
Strand = Plus / Plus
Query: 401 cccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtccagcatgacctatc 460
||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||
Sbjct: 1 cccaaacctcaacaaagttgtatttcttgatgatgacgttgttgtccagcgggacttgtc 60
Query: 461 accactttgggatattgatctatctgggaaggttaatggcgctgttgagacttgcagagg 520
| |||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 61 atcactttgggatattgatctaggtgggaaggtaaatggagctgttgagacctgcagagg 120
Query: 521 tggagatagttgggtgatgtctaagaggttcaggaattattt 562
|||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 121 tggagatacttgggtgatgtccaagaggttcagaaattattt 162
>gb|CF324864.1|CF324864 JMT1--01-K21.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-K21, mRNA sequence
Length = 586
Score = 167 bits (84), Expect = 8e-039
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaat 64
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 416 ccattttgttttagcatcagataacatccttgcagcctcagttgtggtcagttcaactat 475
Query: 65 tagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagaccta 124
||| |||||| | || |||| ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 476 taggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagaccta 535
Query: 125 tcctgccatgcattcatggtttgctttaaattctct 160
|||||| ||||| |||||||||||||| ||| ||||
Sbjct: 536 tcctgctatgcactcatggtttgctttgaatactct 571
>gb|C24789.2|C24789 C24789 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S14039_1A, mRNA sequence
Length = 377
Score = 125 bits (63), Expect = 3e-026
Identities = 112/127 (88%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 5 ccattttgtgttagcatcagataacatccttgcagcctcagttgt-ggtcagatcaacaa 63
||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 249 ccattttgttttagcatcagataacatccttgcagcctcagttgtgggtcagttcaacta 308
Query: 64 ttagatcatcactgaagcctgagaggattgttttccatgttattactgataaaaagacct 123
|||| |||||| | || |||| ||||| ||||||||||| || ||||| || |||||||
Sbjct: 309 ttaggtcatcattaaaacctggcaggatagttttccatgtcatcactgacaagaagacct 368
Query: 124 atcctgc 130
|||||||
Sbjct: 369 atcctgc 375
>gb|CA998815.1|CA998815 S345M_C07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 443
Score = 107 bits (54), Expect = 6e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 485 tgggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaa 544
||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct: 5 tgggaaggtaaatggagctgttgagacctgcagaggtggagatacttgggtgatgtccaa 64
Query: 545 gaggttcaggaattattt 562
||||||||| ||||||||
Sbjct: 65 gaggttcagaaattattt 82
>gb|CF321227.1|CF321227 HD--12-G14.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--12-G14, mRNA sequence
Length = 451
Score = 95.6 bits (48), Expect = 2e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 495 aatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaagaggttcagg 554
||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 3 aatggagctgttgagacctgcagaggtggagatacttgggtgatgtccaagaggttcaga 62
Query: 555 aattattt 562
||||||||
Sbjct: 63 aattattt 70
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0021B21, from chromosome 3, complete sequence
Length = 166777
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 30828 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 30887
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 30888 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 30947
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 30948 aatgttccagtact 30961
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 31757 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 31816
Query: 546 aggttcagga 555
| |||||||
Sbjct: 31817 cgcttcagga 31826
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 29173 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 29114
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 29113 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 29054
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 29053 aatgttccagtact 29040
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 28244 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 28185
Query: 546 aggttcagga 555
| |||||||
Sbjct: 28184 cgcttcagga 28175
>gb|AACV01006093.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006093, whole
genome shotgun sequence
Length = 46578
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 4107 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 4166
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 4167 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 4226
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 4227 aatgttccagtact 4240
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 5036 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 5095
Query: 546 aggttcagga 555
| |||||||
Sbjct: 5096 cgcttcagga 5105
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 963889 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 963830
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 963829 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 963770
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 963769 aatgttccagtact 963756
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 962960 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 962901
Query: 546 aggttcagga 555
| |||||||
Sbjct: 962900 cgcttcagga 962891
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 5832691 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 5832632
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 5832631 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 5832572
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 5832571 aatgttccagtact 5832558
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 5831762 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 5831703
Query: 546 aggttcagga 555
| |||||||
Sbjct: 5831702 cgcttcagga 5831693
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 6025053 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 6024994
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 6024993 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 6024934
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 6024933 aatgttccagtact 6024920
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 6024124 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 6024065
Query: 546 aggttcagga 555
| |||||||
Sbjct: 6024064 cgcttcagga 6024055
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 5799556 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 5799497
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 5799496 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 5799437
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 5799436 aatgttccagtact 5799423
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 5798627 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 5798568
Query: 546 aggttcagga 555
| |||||||
Sbjct: 5798567 cgcttcagga 5798558
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 83.8 bits (42), Expect = 9e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||||||||||||||| || || ||||| | |||||||| ||||||||| | ||||||
Sbjct: 5800343 catgttattactgataagaaaacgtatccggggatgcattcttggtttgctcttaattct 5800284
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
| |||||||| ||||| |||||||||||||| || ||||||||||| || ||||
Sbjct: 5800283 atatcacctgctatagttgaagtgaaaggtgttcaccagtttgattggttgacgagagaa 5800224
Query: 219 aatgttcctgtact 232
|||||||| |||||
Sbjct: 5800223 aatgttccagtact 5800210
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 5799414 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 5799355
Query: 546 aggttcagga 555
| |||||||
Sbjct: 5799354 cgcttcagga 5799345
>gb|CB000004.1|CB000004 S345V_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 777
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaag 545
|||||||| ||||| ||||| ||||| |||||||| | ||||| |||||||||||||||
Sbjct: 167 gggaaggtgaatggtgctgtggagacctgcagaggagaagataactgggtgatgtctaag 226
Query: 546 aggttcagga 555
| |||||||
Sbjct: 227 cgcttcagga 236
>gb|CB638468.1|CB638468 OSJNEa06M20.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa06M20 5', mRNA sequence
Length = 602
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 552 tcagataacgtccttgcagcctcagtagttgtcagatcaac 592
>dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A03, full
insert sequence
Length = 1574
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 343 tcagataacgtccttgcagcctcagtagttgtcagatcaac 383
>dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056D06, full
insert sequence
Length = 2974
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 1813 tcagataacgtccttgcagcctcagtagttgtcagatcaac 1853
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
sequence
Length = 179199
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 69668 tcagataacgtccttgcagcctcagtagttgtcagatcaac 69708
>gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021336, whole
genome shotgun sequence
Length = 24548
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 3262 tcagataacgtccttgcagcctcagtagttgtcagatcaac 3222
>ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNBa0073L01.13), mRNA
Length = 1836
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 913 tcagataacgtccttgcagcctcagtagttgtcagatcaac 953
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 1372396 tcagataacgtccttgcagcctcagtagttgtcagatcaac 1372436
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 1558682 tcagataacgtccttgcagcctcagtagttgtcagatcaac 1558722
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 9949000 tcagataacgtccttgcagcctcagtagttgtcagatcaac 9949040
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10738900 tcagataacgtccttgcagcctcagtagttgtcagatcaac 10738940
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 58.0 bits (29), Expect = 5e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10744939 tcagataacgtccttgcagcctcagtagttgtcagatcaac 10744979
>dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OSJNBb0008L09,
*** SEQUENCING IN PROGRESS ***
Length = 154909
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 140126 tatttcttgatgatgatattgtagtccagcaggaccta 140163
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:B1142B04
Length = 161964
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 106348 tatttcttgatgatgatattgtagtccagcaggaccta 106385
>gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018784, whole
genome shotgun sequence
Length = 33949
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 4257 tatttcttgatgatgatattgtagtccagcaggaccta 4220
>ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2181
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 1643 tatttcttgatgatgatattgtagtccagcaggaccta 1680
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 24252545 tatttcttgatgatgatattgtagtccagcaggaccta 24252582
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 15730991 tatttcttgatgatgatattgtagtccagcaggaccta 15731028
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 23332997 tatttcttgatgatgatattgtagtccagcaggaccta 23333034
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 421 tatttcttgatgatgatgttgttgtccagcatgaccta 458
||||||||||||||||| |||| |||||||| ||||||
Sbjct: 24490632 tatttcttgatgatgatattgtagtccagcaggaccta 24490669
>gb|AU225596.1|AU225596 AU225596 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0566, mRNA sequence
Length = 483
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| | |||||||||||||| || |||||||||||
Sbjct: 431 tcagataacgttcttgcagcctcagtagttgtcagatcaac 471
>dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1165_E01,
*** SEQUENCING IN PROGRESS ***
Length = 101546
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || || ||||||||
Sbjct: 53943 tcagataacgtccttgcagcctcagtagttgttagatcaac 53983
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || || ||||||||
Sbjct: 71156 tcagataacgtccttgcagcctcagtagttgttagatcaac 71116
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || || ||||||||
Sbjct: 71156 tcagataacgtccttgcagcctcagtagttgttagatcaac 71116
>gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014968, whole
genome shotgun sequence
Length = 17272
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || || ||||||||
Sbjct: 6368 tcagataacgtccttgcagcctcagtagttgttagatcaac 6328
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 tcagataacatccttgcagcctcagttgtggtcagatcaac 61
||||||||| |||||||||||||||| || || ||||||||
Sbjct: 11765747 tcagataacgtccttgcagcctcagtagttgttagatcaac 11765707
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 905,996
Number of Sequences: 438736
Number of extensions: 905996
Number of successful extensions: 19510
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18639
Number of HSP's gapped (non-prelim): 860
length of query: 570
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 549
effective length of database: 2,791,206,460
effective search space: 1532372346540
effective search space used: 1532372346540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)