BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3570920.2.1
(786 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063960.1| Oryza sativa (japonica cultivar-group) cDNA... 884 0.0
gb|AACV01002316.1| Oryza sativa (japonica cultivar-group) c... 884 0.0
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 884 0.0
ref|NM_191138.1| Oryza sativa (japonica cultivar-group), p... 884 0.0
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 884 0.0
dbj|AP002972.3| Oryza sativa (japonica cultivar-group) geno... 884 0.0
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 884 0.0
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 884 0.0
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 884 0.0
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AP005068.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01004225.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 48 0.007
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
>dbj|AK063960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G07, full
insert sequence
Length = 1965
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 550 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 609
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 610 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 669
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 670 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 729
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 730 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 789
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 790 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 849
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 850 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 909
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 910 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 969
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 970 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 1029
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 1030 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 1089
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 1090 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 1149
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 1150 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 1209
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 1210 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 1269
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 1270 ggacatcatgactggaggaaacattacaaatgcaaatggtac 1311
>gb|AACV01002316.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002316, whole
genome shotgun sequence
Length = 6267
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1882 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 1941
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 1942 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 2001
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 2002 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 2061
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 2062 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 2121
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2122 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 2181
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 2182 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 2241
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 2242 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 2301
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 2302 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 2361
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 2362 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 2421
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 2422 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 2481
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 2482 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 2541
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 2542 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 2601
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 2602 ggacatcatgactggaggaaacattacaaatgcaaatggtac 2643
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 30972571 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 30972630
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 30972631 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 30972690
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 30972691 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 30972750
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 30972751 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 30972810
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 30972811 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 30972870
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 30972871 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 30972930
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 30972931 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 30972990
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 30972991 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 30973050
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 30973051 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 30973110
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 30973111 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 30973170
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 30973171 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 30973230
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 30973231 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 30973290
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 30973291 ggacatcatgactggaggaaacattacaaatgcaaatggtac 30973332
>ref|NM_191138.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2295
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 324 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 383
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 384 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 443
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 444 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 503
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 504 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 563
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 564 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 623
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 624 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 683
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 684 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 743
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 744 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 803
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 804 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 863
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 864 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 923
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 924 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 983
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 984 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 1043
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 1044 ggacatcatgactggaggaaacattacaaatgcaaatggtac 1085
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5419954 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 5420013
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 5420014 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 5420073
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 5420074 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 5420133
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 5420134 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 5420193
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 5420194 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 5420253
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 5420254 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 5420313
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 5420314 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 5420373
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 5420374 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 5420433
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 5420434 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 5420493
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 5420494 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 5420553
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 5420554 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 5420613
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 5420614 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 5420673
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 5420674 ggacatcatgactggaggaaacattacaaatgcaaatggtac 5420715
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0638D12
Length = 161277
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 92268 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 92327
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 92328 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 92387
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 92388 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 92447
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 92448 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 92507
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 92508 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 92567
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 92568 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 92627
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 92628 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 92687
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 92688 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 92747
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 92748 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 92807
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 92808 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 92867
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 92868 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 92927
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 92928 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 92987
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 92988 ggacatcatgactggaggaaacattacaaatgcaaatggtac 93029
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5322733 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 5322792
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 5322793 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 5322852
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 5322853 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 5322912
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 5322913 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 5322972
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 5322973 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 5323032
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 5323033 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 5323092
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 5323093 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 5323152
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 5323153 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 5323212
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 5323213 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 5323272
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 5323273 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 5323332
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 5323333 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 5323392
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 5323393 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 5323452
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 5323453 ggacatcatgactggaggaaacattacaaatgcaaatggtac 5323494
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 30524454 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 30524513
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 30524514 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 30524573
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 30524574 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 30524633
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 30524634 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 30524693
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 30524694 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 30524753
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 30524754 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 30524813
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 30524814 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 30524873
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 30524874 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 30524933
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 30524934 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 30524993
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 30524994 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 30525053
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 30525054 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 30525113
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 30525114 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 30525173
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 30525174 ggacatcatgactggaggaaacattacaaatgcaaatggtac 30525215
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 884 bits (446), Expect = 0.0
Identities = 683/762 (89%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 30891901 cacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgt 30891960
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 30891961 cgtgcctgccatgcgcaatgtgcatactgccctcaagaaggccggcctgcacaagaagat 30892020
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 30892021 caccatctcgagcacgcactcgctcgggatactgtcccggtcgtttccgccgtccgcggg 30892080
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||
Sbjct: 30892081 ggcgttcaacagcagctacgcctacttcctgaagccgatgctggagttcctcgtggagaa 30892140
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 30892141 ccaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcaccaagcaa 30892200
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
||| || || |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 30892201 tgtctcgctgaactacgcgctgttctcgccgcagtctcaggatgtgattgaccccaacac 30892260
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttgcgctcat 428
|||||||||||||| ||||||||||| || ||| |||||||||| |||||||| || ||
Sbjct: 30892261 cggactggtttacacaaacatgttcgatgcgcagatcgattccattttctttgcactgat 30892320
Query: 429 ggctctgaacttcaagactttgaagatcatgatcactgagtcagggtggccaaacaaagg 488
|||||||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 30892321 ggctctgaactttaagactctgaagatcatggtcaccgagacagggtggccaaacaaagg 30892380
Query: 489 ggcggtcaaggagactggagccacaccagacaatgctcagacctacaataccaatttgat 548
||| | |||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 30892381 ggcagctaaggagaccggagcaacacctgacaatgctcagacctacaacactaatctcat 30892440
Query: 549 acgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgtcta 608
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||
Sbjct: 30892441 tcgtcatgttgttaatgacagcggcacacctgcaaaacctggggaagaaattgatgtgta 30892500
Query: 609 catattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactgggg 668
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 30892501 cattttttcattgttcaatgagaacaggaaaccaggaattgagtctgagaggaactgggg 30892560
Query: 669 actgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaatgt 728
||||| || ||||| | |||||||| ||||| || |||||||| ||| ||||||||||
Sbjct: 30892561 gctgttcttccctgaccaaagctctatatacagtctagattggactggcagaggcaatgt 30892620
Query: 729 ggatgtgatgactggagcaaacattacaagtgctaatggtac 770
||| | |||||||||| ||||||||||| ||| ||||||||
Sbjct: 30892621 ggacatcatgactggaggaaacattacaaatgcaaatggtac 30892662
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 48.1 bits (24), Expect = 0.007
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 759 tgctaatggtacctgcccgggcggccgc 786
||||||| ||||||||||||||||||||
Sbjct: 261 tgctaatagtacctgcccgggcggccgc 288
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0644G05
Length = 143119
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 80218 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 80277
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 80278 gaccaaagctctatatacag 80297
>gb|AACV01004225.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004225, whole
genome shotgun sequence
Length = 27270
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 18803 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 18862
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 18863 gaccaaagctctatatacag 18882
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 1614845 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 1614904
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 1614905 gaccaaagctctatatacag 1614924
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 1761606 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 1761665
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 1761666 gaccaaagctctatatacag 1761685
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 15214670 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 15214729
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 15214730 gaccaaagctctatatacag 15214749
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 ttcaatgagaacaggaaacctggcatcgagtcggagaggaactggggactgttttttcct 681
||||||||||||| |||||| | || || || |||||||||||||| ||||| || |||
Sbjct: 15552658 ttcaatgagaacaagaaaccggaaattgaatctgagaggaactgggggctgttcttccct 15552717
Query: 682 gataagagctctatctacag 701
|| | |||||||| |||||
Sbjct: 15552718 gaccaaagctctatatacag 15552737
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 cggtcgttcccgccgtctgctg 187
||||||||||||||||||||||
Sbjct: 864601 cggtcgttcccgccgtctgctg 864580
>dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA, clone:T13036T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1524, genomic survey sequence
Length = 282
Score = 42.1 bits (21), Expect = 0.45
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 762 taatggtacctgcccgggcggccgc 786
||||| |||||||||||||||||||
Sbjct: 191 taatgatacctgcccgggcggccgc 215
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 766 ggtacctgcccgggcggccgc 786
|||||||||||||||||||||
Sbjct: 206 ggtacctgcccgggcggccgc 226
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 958,736
Number of Sequences: 438736
Number of extensions: 958736
Number of successful extensions: 5997
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5851
Number of HSP's gapped (non-prelim): 146
length of query: 786
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 765
effective length of database: 2,791,206,460
effective search space: 2135272941900
effective search space used: 2135272941900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)