BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3561840.2.1
(1168 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA... 478 e-132
gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS ... 478 e-132
gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-... 353 1e-094
dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA... 254 9e-065
gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-... 254 9e-065
ref|NM_188300.1| Oryza sativa (japonica cultivar-group), p... 254 9e-065
emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-gro... 234 9e-059
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 234 9e-059
emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC O... 234 9e-059
emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B... 234 9e-059
ref|NT_107159.1| Oryza sativa (japonica cultivar-group) 234 9e-059
gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) c... 234 9e-059
gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) c... 234 9e-059
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 234 9e-059
dbj|AP003105.2| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA... 210 1e-051
dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA... 210 1e-051
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) c... 190 1e-045
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 190 1e-045
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 190 1e-045
gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda ph... 180 1e-042
dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA... 174 7e-041
gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-... 174 7e-041
gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) c... 174 7e-041
ref|XM_473638.1| Oryza sativa (japonica cultivar-group), p... 174 7e-041
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 174 7e-041
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 174 7e-041
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 174 7e-041
emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromoso... 174 7e-041
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 174 7e-041
gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (j... 168 4e-039
gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (j... 168 4e-039
gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (j... 168 4e-039
gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing ... 168 4e-039
gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing ... 168 4e-039
dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA... 168 4e-039
gb|AY345224.1| Oryza sativa (japonica cultivar-group) trans... 168 4e-039
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 168 4e-039
gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-... 168 4e-039
gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) c... 168 4e-039
ref|NM_197541.1| Oryza sativa (japonica cultivar-group) put... 168 4e-039
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 168 4e-039
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) c... 165 7e-038
dbj|AK070958.1| Oryza sativa (japonica cultivar-group) cDNA... 163 3e-037
gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJN... 163 3e-037
gb|AY551913.1| Oryza sativa (japonica cultivar-group) MADS-... 163 3e-037
gb|AACV01002820.1| Oryza sativa (japonica cultivar-group) c... 163 3e-037
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 163 3e-037
dbj|AP003379.2| Oryza sativa (japonica cultivar-group) geno... 163 3e-037
dbj|AP003346.4| Oryza sativa (japonica cultivar-group) geno... 163 3e-037
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 163 3e-037
gb|AY177693.1| Oryza sativa (japonica cultivar-group) trans... 161 1e-036
ref|XM_463559.1| Oryza sativa (japonica cultivar-group), p... 161 1e-036
gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (jap... 149 4e-033
gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flow... 149 4e-033
gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6... 149 4e-033
dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA... 149 4e-033
dbj|AP004178.3| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) c... 149 4e-033
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 149 4e-033
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|CF294135.1|CF294135 30DGS--03-I23.g1 Rice leaf plasmid c... 143 2e-031
gb|CF297258.1|CF297258 30DGS--07-P17.b1 Rice leaf plasmid c... 143 2e-031
dbj|AB003328.1| Oryza sativa (japonica cultivar-group) mRNA... 143 2e-031
dbj|AK067641.1| Oryza sativa (japonica cultivar-group) cDNA... 143 2e-031
dbj|AK104921.1| Oryza sativa (japonica cultivar-group) cDNA... 143 2e-031
gb|AY332476.1| Oryza sativa (japonica cultivar-group) MADS ... 143 2e-031
gb|AC098695.2| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|AY551915.1| Oryza sativa (japonica cultivar-group) MADS-... 143 2e-031
gb|AACV01005781.1| Oryza sativa (japonica cultivar-group) c... 143 2e-031
ref|XM_468584.1| Oryza sativa (japonica cultivar-group), p... 143 2e-031
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 143 2e-031
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 143 2e-031
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein 129 4e-027
gb|D46933.1|D46933 RICS11905A Rice green shoot Oryza sativa... 127 1e-026
gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library O... 125 6e-026
dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA... 125 6e-026
gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) ... 125 6e-026
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 125 6e-026
gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-... 125 6e-026
gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) c... 125 6e-026
ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA 125 6e-026
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 125 6e-026
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 125 6e-026
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 125 6e-026
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 125 6e-026
gb|AY332477.1| Oryza sativa (japonica cultivar-group) MADS ... 117 1e-023
gb|AU068508.1|AU068508 AU068508 Rice callus Oryza sativa (j... 115 6e-023
gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonic... 113 2e-022
gb|AU225854.1|AU225854 AU225854 Oryza sativa Koshihikari pi... 113 2e-022
gb|CF332154.1|CF332154 NACL--08-I21.g1 Rice callus plasmid ... 113 2e-022
dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-022
dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-022
gb|AC105732.3| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) c... 113 2e-022
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 113 2e-022
gb|CV720574.1|CV720574 YBH--01-B14.b1 Rice before heading y... 103 2e-019
gb|CV721367.1|CV721367 YBH--03-N20.b1 Rice before heading y... 103 2e-019
gb|U78892.1|OSU78892 Oryza sativa MADS box protein (OsMADS8... 103 2e-019
dbj|AK072867.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 103 2e-019
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|CF315263.1|CF315263 HD--04-B23.b1 OsHDAC1-overexpressing... 101 8e-019
dbj|AB003324.1| Oryza sativa (japonica cultivar-group) mRNA... 101 8e-019
dbj|AK100227.1| Oryza sativa (japonica cultivar-group) cDNA... 101 8e-019
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 101 8e-019
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 101 8e-019
gb|AY551917.1| Oryza sativa (japonica cultivar-group) MADS-... 101 8e-019
gb|AY551922.1| Oryza sativa (japonica cultivar-group) MADS-... 101 8e-019
gb|AY551926.1| Oryza sativa (japonica cultivar-group) MADS-... 101 8e-019
gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) c... 101 8e-019
ref|XM_469790.1| Oryza sativa (japonica cultivar-group), mRNA 101 8e-019
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 101 8e-019
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|AQ271415.1|AQ271415 nbxb0025B08f CUGI Rice BAC Library O... 94 2e-016
gb|AQ330858.1|AQ330858 nbxb0048E10f CUGI Rice BAC Library O... 94 2e-016
gb|AQ575051.1|AQ575051 nbxb0086L17r CUGI Rice BAC Library O... 94 2e-016
gb|AU225127.1|AU225127 AU225127 Oryza sativa Koshihikari pi... 94 2e-016
gb|U78890.1|OSU78890 Oryza sativa MADS box protein (OsMADS5... 94 2e-016
dbj|AK064184.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
gb|AACV01013077.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 94 2e-016
ref|NM_185637.2| Oryza sativa (japonica cultivar-group), mRNA 94 2e-016
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|CV721444.1|CV721444 YBH--04-C11.b1 Rice before heading y... 90 3e-015
dbj|AK111776.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
dbj|AP005545.3| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|AACV01013335.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 90 3e-015
dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA... 88 1e-014
gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS ... 88 1e-014
dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA... 88 1e-014
gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-... 88 1e-014
ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA 88 1e-014
dbj|AP006720.1| Oryza sativa (japonica cultivar-group) geno... 86 5e-014
dbj|AP004049.2| Oryza sativa (japonica cultivar-group) geno... 86 5e-014
gb|AACV01003159.1| Oryza sativa (japonica cultivar-group) c... 86 5e-014
ref|XM_463804.1| Oryza sativa (japonica cultivar-group), mRNA 86 5e-014
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 86 5e-014
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 86 5e-014
gb|AY177701.1| Oryza sativa (japonica cultivar-group) trans... 82 8e-013
gb|AACV01009916.1| Oryza sativa (japonica cultivar-group) c... 82 8e-013
ref|XM_472756.1| Oryza sativa (japonica cultivar-group), p... 82 8e-013
ref|XM_483489.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-013
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 82 8e-013
emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromoso... 82 8e-013
emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromoso... 82 8e-013
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 80 3e-012
dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA... 80 3e-012
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
gb|AACV01018778.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA 80 3e-012
ref|XM_483124.1| Oryza sativa (japonica cultivar-group), mRNA 80 3e-012
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 80 3e-012
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box pro... 80 3e-012
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|CB652556.1|CB652556 OSJNEc02K24.f OSJNEc Oryza sativa (j... 78 1e-011
gb|CF306783.1|CF306783 HDA1--04-N10.g1 OsHDAC1-overexpressi... 78 1e-011
gb|CF322477.1|CF322477 HDN--01-C18.g1 OsHDAC1-overexpressin... 78 1e-011
gb|CF325684.1|CF325684 JMT1--03-O10.g1 AtJMT-overexpressing... 78 1e-011
dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA... 78 1e-011
dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
dbj|AP004159.3| Oryza sativa (japonica cultivar-group) geno... 78 1e-011
gb|AACV01005456.1| Oryza sativa (japonica cultivar-group) c... 78 1e-011
ref|XM_467915.1| Oryza sativa (japonica cultivar-group), mRNA 78 1e-011
dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1... 78 1e-011
gb|CF336890.1|CF336890 JMT--07-B20.b1 AtJMT-overexpressing ... 76 5e-011
gb|AY345221.1| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
gb|AY345222.1| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
gb|AC125471.3| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
gb|AACV01006007.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 76 5e-011
emb|AJ536158.1|OSA536158 Oryza sativa (japonica cultivar-gr... 76 5e-011
gb|AC090974.1|AC090974 Oryza sativa (japonica cultivar-grou... 74 2e-010
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 74 2e-010
dbj|AK070894.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|AY551924.1| Oryza sativa (japonica cultivar-group) MADS-... 74 2e-010
gb|AACV01002803.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|XM_463532.1| Oryza sativa (japonica cultivar-group), p... 74 2e-010
dbj|AP003561.2| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 72 7e-010
dbj|AP003951.3| Oryza sativa (japonica cultivar-group) geno... 72 7e-010
gb|AACV01014097.1| Oryza sativa (japonica cultivar-group) c... 72 7e-010
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|D15657.2|D15657 RICC1032A Rice callus Oryza sativa (japo... 70 3e-009
gb|AU078632.1|AU078632 AU078632 Rice callus Oryza sativa (j... 68 1e-008
gb|CV731070.1|CV731070 FLO--04-O21.g1 Rice flower lambda ph... 68 1e-008
dbj|AB003327.1| Oryza sativa (japonica cultivar-group) mRNA... 68 1e-008
dbj|AP003908.1| Oryza sativa (japonica cultivar-group) chro... 68 1e-008
gb|AY177694.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
dbj|AK066160.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
gb|AY345220.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
gb|AACV01002956.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AACV01018525.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_482530.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 68 1e-008
dbj|AP003868.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|C72923.1|C72923 C72923 Rice panicle at flowering stage O... 66 5e-008
gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Ory... 66 5e-008
dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA... 66 5e-008
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AK100233.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-... 66 5e-008
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-008
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 66 5e-008
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|AU100638.1|AU100638 AU100638 Rice callus Oryza sativa (j... 62 7e-007
gb|AACV01012869.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
ref|NM_185350.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-007
ref|XM_550468.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-007
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 62 7e-007
gb|AQ866444.1|AQ866444 nbeb0028G05f CUGI Rice BAC Library (... 60 3e-006
gb|C98962.1|C98962 C98962 Rice panicle at flowering stage O... 60 3e-006
gb|CZ168542.1|CZ168542 UCDRGT395_5.1 UCD RGT Rice Insertion... 58 1e-005
gb|CA755986.1|CA755986 BR030032000_PLATE_E04_29_033.ab1 OA ... 58 1e-005
dbj|AP004766.1| Oryza sativa (japonica cultivar-group) chro... 58 1e-005
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 58 1e-005
gb|AY250075.1| Oryza sativa (japonica cultivar-group) MADS2... 58 1e-005
gb|AY177696.1| Oryza sativa (japonica cultivar-group) trans... 58 1e-005
gb|AY551923.1| Oryza sativa (japonica cultivar-group) MADS-... 58 1e-005
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|AACV01004772.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
dbj|AP006161.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|C74765.1|C74765 C74765 Rice cDNA from immature leaf incl... 56 4e-005
gb|CB666400.1|CB666400 OSJNEd13E17.f OSJNEd Oryza sativa (j... 56 4e-005
gb|CB682181.1|CB682181 OSJNEf09D09.f OSJNEf Oryza sativa (j... 56 4e-005
gb|CF309429.1|CF309429 ABF--03-J22.g1 ABF3-overexpressing t... 56 4e-005
gb|CF327296.1|CF327296 NACL--01-L16.g1 Rice callus plasmid ... 56 4e-005
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 56 4e-005
gb|AY224482.1| Oryza sativa (japonica cultivar-group) isola... 56 4e-005
gb|AY177702.1| Oryza sativa (japonica cultivar-group) trans... 56 4e-005
dbj|AP004888.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC O... 56 4e-005
gb|AACV01005341.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|AACV01024966.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|XM_467621.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|D47001.1|D47001 RICS12021A Rice green shoot Oryza sativa... 54 2e-004
gb|AU068577.1|AU068577 AU068577 Rice callus Oryza sativa (j... 54 2e-004
gb|D47632.1|D47632 RICS13245A Rice green shoot Oryza sativa... 52 7e-004
gb|C26796.1|C26796 C26796 Rice callus cDNA Oryza sativa (ja... 52 7e-004
gb|CF322128.1|CF322128 HD--13-J23.b1 OsHDAC1-overexpressing... 52 7e-004
dbj|AP004322.1| Oryza sativa (japonica cultivar-group) chro... 52 7e-004
dbj|AK111859.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
gb|AY174093.1| Oryza sativa (japonica cultivar-group) MADS3... 52 7e-004
gb|AY345223.2| Oryza sativa (japonica cultivar-group) trans... 52 7e-004
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 52 7e-004
dbj|AP004741.3| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
gb|AACV01013305.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|AACV01014099.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|AACV01014754.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|C73896.1|C73896 C73896 Rice panicle (longer than 10cm) O... 50 0.003
gb|AU029711.1|AU029711 AU029711 Rice panicle shorter than 3... 50 0.003
gb|C73941.2|C73941 C73941 Rice panicle (longer than 10cm) O... 50 0.003
gb|CD670941.1|CD670941 OsMR362 5MT resistant rice mutant cD... 50 0.003
dbj|AB003323.1| Oryza sativa (japonica cultivar-group) mRNA... 50 0.003
dbj|AK069317.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK109522.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AY177697.1| Oryza sativa (japonica cultivar-group) trans... 50 0.003
dbj|AP004836.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|AACV01003433.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01014909.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_464283.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP005463.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|C91819.1|C91819 C91819 Rice panicle shorter than 3cm Ory... 48 0.011
gb|AQ573739.1|AQ573739 nbxb0084D10r CUGI Rice BAC Library O... 46 0.043
gb|AQ687916.1|AQ687916 nbxb0075P06r CUGI Rice BAC Library O... 46 0.043
gb|AU095354.1|AU095354 AU095354 Rice cDNA from immature lea... 46 0.043
dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA... 46 0.043
dbj|AP003910.1| Oryza sativa (japonica cultivar-group) chro... 46 0.043
dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
dbj|AP004566.3| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-... 46 0.043
dbj|AP005156.4| Oryza sativa (japonica cultivar-group) geno... 46 0.043
dbj|AP003736.3| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|AACV01016495.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
gb|AACV01017125.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.043
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
dbj|AG212114.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AP004616.1| Oryza sativa (japonica cultivar-group) chro... 44 0.17
dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
gb|AY177699.1| Oryza sativa (japonica cultivar-group) trans... 44 0.17
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 44 0.17
dbj|AP005646.2| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01002270.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01013366.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01013369.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01013861.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|NM_191843.1| Oryza sativa (japonica cultivar-group), p... 44 0.17
dbj|AP003343.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AC134044.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
>dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A03, full
insert sequence
Length = 1214
Score = 478 bits (241), Expect = e-132
Identities = 483/563 (85%), Gaps = 3/563 (0%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 65 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 124
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 125 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 184
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 185 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 244
Query: 283 cag---tgtgaaggctacgatcgagaggtacaagaaggcacacgccgttggctcttcctc 339
|| |||||||||||| || || |||||||||||||| || || |||||| | ||
Sbjct: 245 caacaatgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttc 304
Query: 340 tggccccccactcttagagcacaatgcccagcaattctaccagcaagaatccgcaaaact 399
||| | || ||| ||||| |||||| ||||||| ||||||||| || || || |||||
Sbjct: 305 tggtgcacctctcatagaggtcaatgctcagcaatactaccagcaggagtctgccaaact 364
Query: 400 gcgcaaccagatccagatgctgcaaaacactaacaggcacttggttggtgactctgtggg 459
|||| ||||||| ||||||||||||||||| |||| |||| ||||||| || |||| |
Sbjct: 365 gcgccaccagattcagatgctgcaaaacaccaacaagcacctggttggcgataatgtgag 424
Query: 460 aaacttgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaa 519
||| ||||||| || ||||||||||| || || |||||||| ||||||||||| || ||
Sbjct: 425 caacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaa 484
Query: 520 gatcagggccaggaagagtgagctgctggctgccgagatcaattacatggccaaaaggga 579
|||||| |||||||||| ||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 485 gatcagagccaggaagaatgaactgctggcttcagagatcaattacatggccaaaaggga 544
Query: 580 gactgagcttcagaatgaccacatgaacctcaggaccaagattgaggagggagagcaaca 639
|| |||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||| ||
Sbjct: 545 gattgagcttcagaacgacaacatggacctcagaaccaagattgctgaggaggagcagca 604
Query: 640 gctgcagcaggtgactgtggccc 662
||||||||||||||| |||||||
Sbjct: 605 gctgcagcaggtgacggtggccc 627
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 708 ctggacatgaagtgcttcttccc 730
>gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS protein (MAF1) mRNA,
complete cds
Length = 1010
Score = 478 bits (241), Expect = e-132
Identities = 483/563 (85%), Gaps = 3/563 (0%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 38 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 97
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 98 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 157
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 158 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 217
Query: 283 cag---tgtgaaggctacgatcgagaggtacaagaaggcacacgccgttggctcttcctc 339
|| |||||||||||| || || |||||||||||||| || || |||||| | ||
Sbjct: 218 caacaatgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttc 277
Query: 340 tggccccccactcttagagcacaatgcccagcaattctaccagcaagaatccgcaaaact 399
||| | || ||| ||||| |||||| ||||||| ||||||||| || || || |||||
Sbjct: 278 tggtgcacctctcatagaggtcaatgctcagcaatactaccagcaggagtctgccaaact 337
Query: 400 gcgcaaccagatccagatgctgcaaaacactaacaggcacttggttggtgactctgtggg 459
|||| ||||||| ||||||||||||||||| |||| |||| ||||||| || |||| |
Sbjct: 338 gcgccaccagattcagatgctgcaaaacaccaacaagcacctggttggcgataatgtgag 397
Query: 460 aaacttgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaa 519
||| ||||||| || ||||||||||| || || |||||||| ||||||||||| || ||
Sbjct: 398 caacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaa 457
Query: 520 gatcagggccaggaagagtgagctgctggctgccgagatcaattacatggccaaaaggga 579
|||||| |||||||||| ||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 458 gatcagagccaggaagaatgaactgctggcttcagagatcaattacatggccaaaaggga 517
Query: 580 gactgagcttcagaatgaccacatgaacctcaggaccaagattgaggagggagagcaaca 639
|| |||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||| ||
Sbjct: 518 gattgagcttcagaacgacaacatggacctcagaaccaagattgctgaggaggagcagca 577
Query: 640 gctgcagcaggtgactgtggccc 662
||||||||||||||| |||||||
Sbjct: 578 gctgcagcaggtgacggtggccc 600
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 681 ctggacatgaagtgcttcttccc 703
>gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS206
mRNA, complete cds
Length = 914
Score = 353 bits (178), Expect = 1e-094
Identities = 372/436 (85%), Gaps = 3/436 (0%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 147 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 206
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 207 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 266
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 267 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 326
Query: 283 ---cagtgtgaaggctacgatcgagaggtacaagaaggcacacgccgttggctcttcctc 339
||||||||||||||| || || |||||||||||||| || || |||||| | ||
Sbjct: 327 cagcagtgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttc 386
Query: 340 tggccccccactcttagagcacaatgcccagcaattctaccagcaagaatccgcaaaact 399
||| | || ||| ||||| |||||| ||||||| ||||||||| || || || |||||
Sbjct: 387 tggtgcacctctcatagaggtcaatgctcagcaatactaccagcaggagtctgccaaact 446
Query: 400 gcgcaaccagatccagatgctgcaaaacactaacaggcacttggttggtgactctgtggg 459
|||| ||||||| ||||||||||||||||| |||| |||| ||||||| || |||| |
Sbjct: 447 gcgccaccagattcagatgctgcaaaacaccaacaagcacctggttggcgataatgtgag 506
Query: 460 aaacttgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaa 519
||| ||||||| || ||||||||||| || || |||||||| ||||||||||| || ||
Sbjct: 507 caacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaa 566
Query: 520 gatcagggccaggaag 535
|||||| |||||||||
Sbjct: 567 gatcagagccaggaag 582
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 583 ctggacatgaagtgcttcttccc 605
>dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D02, full
insert sequence
Length = 1511
Score = 254 bits (128), Expect = 9e-065
Identities = 194/216 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 347 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 406
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 407 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 466
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 467 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 526
Query: 284 agtgtgaaggctacgatcgagaggtacaagaaggca 319
|||||||| | || | ||||||||||||||||||
Sbjct: 527 agtgtgaaatccaccgttgagaggtacaagaaggca 562
>gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-like protein RMADS222
mRNA, complete cds
Length = 1051
Score = 254 bits (128), Expect = 9e-065
Identities = 194/216 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 120 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 179
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 180 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 239
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 299
Query: 284 agtgtgaaggctacgatcgagaggtacaagaaggca 319
|||||||| | || | ||||||||||||||||||
Sbjct: 300 agtgtgaaatccaccgttgagaggtacaagaaggca 335
>ref|NM_188300.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 744
Score = 254 bits (128), Expect = 9e-065
Identities = 194/216 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 1 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 60
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 120
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 180
Query: 284 agtgtgaaggctacgatcgagaggtacaagaaggca 319
|||||||| | || | ||||||||||||||||||
Sbjct: 181 agtgtgaaatccaccgttgagaggtacaagaaggca 216
>emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBa0021D06, *** SEQUENCING IN PROGRESS ***
Length = 139671
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 71964 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 72023
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 72024 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 72083
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 72084 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 72143
Query: 283 ca 284
||
Sbjct: 72144 ca 72145
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 74709 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 74768
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 74769 gagccaggaag 74779
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 74457 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 74516
Query: 429 ctaaca 434
| ||||
Sbjct: 74517 ccaaca 74522
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 75008 ctgctggcttcagagatcaattacatggccaaaaggg 75044
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 73732 cagtgtgaaggctacaattgacaggtacaagaaggc 73767
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 75575 ctggacatgaagtgcttcttccc 75597
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 75464 gagcagcagctgcagcaggtgacggtggccc 75494
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 75192 ggagattgagcttcagaacgacaacatggacctcagaaccaag 75234
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 139684
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 67714 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 67655
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 67654 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 67595
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 67594 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 67535
Query: 283 ca 284
||
Sbjct: 67534 ca 67533
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 64969 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 64910
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 64909 gagccaggaag 64899
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 65221 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 65162
Query: 429 ctaaca 434
| ||||
Sbjct: 65161 ccaaca 65156
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 64670 ctgctggcttcagagatcaattacatggccaaaaggg 64634
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 65946 cagtgtgaaggctacaattgacaggtacaagaaggc 65911
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 64486 ggagattgagcttcagaacgacaacatggacctcagaaccaag 64444
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 64214 gagcagcagctgcagcaggtgacggtggccc 64184
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 64103 ctggacatgaagtgcttcttccc 64081
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 117585
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 12964 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 12905
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 12904 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 12845
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 12844 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 12785
Query: 283 ca 284
||
Sbjct: 12784 ca 12783
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 10219 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 10160
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 10159 gagccaggaag 10149
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 10471 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 10412
Query: 429 ctaaca 434
| ||||
Sbjct: 10411 ccaaca 10406
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 9920 ctgctggcttcagagatcaattacatggccaaaaggg 9884
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 11196 cagtgtgaaggctacaattgacaggtacaagaaggc 11161
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 9736 ggagattgagcttcagaacgacaacatggacctcagaaccaag 9694
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 9464 gagcagcagctgcagcaggtgacggtggccc 9434
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 9353 ctggacatgaagtgcttcttccc 9331
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 160556
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 137976 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 138035
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 138036 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 138095
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 138096 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 138155
Query: 283 ca 284
||
Sbjct: 138156 ca 138157
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 140721 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 140780
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 140781 gagccaggaag 140791
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 140469 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 140528
Query: 429 ctaaca 434
| ||||
Sbjct: 140529 ccaaca 140534
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 141020 ctgctggcttcagagatcaattacatggccaaaaggg 141056
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 139744 cagtgtgaaggctacaattgacaggtacaagaaggc 139779
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 141587 ctggacatgaagtgcttcttccc 141609
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 141476 gagcagcagctgcagcaggtgacggtggccc 141506
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 141204 ggagattgagcttcagaacgacaacatggacctcagaaccaag 141246
>ref|NT_107159.1| Oryza sativa (japonica cultivar-group)
Length = 480567
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 261205 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 261264
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 261265 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 261324
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 261325 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 261384
Query: 283 ca 284
||
Sbjct: 261385 ca 261386
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 263950 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 264009
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 264010 gagccaggaag 264020
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 263698 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 263757
Query: 429 ctaaca 434
| ||||
Sbjct: 263758 ccaaca 263763
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 264249 ctgctggcttcagagatcaattacatggccaaaaggg 264285
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 262973 cagtgtgaaggctacaattgacaggtacaagaaggc 263008
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 264816 ctggacatgaagtgcttcttccc 264838
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 264705 gagcagcagctgcagcaggtgacggtggccc 264735
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 264433 ggagattgagcttcagaacgacaacatggacctcagaaccaag 264475
>gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000383, whole
genome shotgun sequence
Length = 32294
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 20697 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 20638
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 20637 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 20578
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 20577 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 20518
Query: 284 ag 285
||
Sbjct: 20517 ag 20516
>gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024177, whole
genome shotgun sequence
Length = 23681
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 21809 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 21750
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 21749 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 21690
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 21689 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 21630
Query: 283 ca 284
||
Sbjct: 21629 ca 21628
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 19064 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 19005
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 19004 gagccaggaag 18994
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 19316 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 19257
Query: 429 ctaaca 434
| ||||
Sbjct: 19256 ccaaca 19251
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 18765 ctgctggcttcagagatcaattacatggccaaaaggg 18729
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 20041 cagtgtgaaggctacaattgacaggtacaagaaggc 20006
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 18581 ggagattgagcttcagaacgacaacatggacctcagaaccaag 18539
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 18309 gagcagcagctgcagcaggtgacggtggccc 18279
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 18198 ctggacatgaagtgcttcttccc 18176
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 5565030 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 5564971
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5564970 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 5564911
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5564910 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 5564851
Query: 284 ag 285
||
Sbjct: 5564850 ag 5564849
Score = 163 bits (82), Expect = 3e-037
Identities = 148/170 (87%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| | ||||||||| ||||| ||||||||||| |||||||| ||||| ||
Sbjct: 38575790 catggggagggggaagattgagataaagagaatcgagaacaagacgagccgtcaggtgac 38575849
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||||| | |||||||| || |||||||| ||||||||| || | ||||||||
Sbjct: 38575850 cttctgcaagcgcaggaatgggctgctgaagaaggcctacgagctcgccatactctgcga 38575909
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagt 272
||| ||| | || ||| |||||||||||||||| ||||||||||| ||||
Sbjct: 38575910 cgctgagatcgcactcatcgtcttctccagccgaggacgcctctatgagt 38575959
Score = 73.8 bits (37), Expect = 2e-010
Identities = 111/133 (83%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaat 181
||||||||||||||||||||| ||| | ||| ||||| ||||||| ||||||| | |
Sbjct: 38397728 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 38397669
Query: 182 gggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggt-ggcgctcgt 240
||| ||||||||||||| |||| || |||||| |||||||||||||| |||| ||||
Sbjct: 38397668 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcg-tcgt 38397610
Query: 241 cgtcttctccagc 253
| |||||||||||
Sbjct: 38397609 catcttctccagc 38397597
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 189 tcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttct 248
|||||||||||| ||||||| || | |||||||||| |||||||||||| |||||||||
Sbjct: 40417627 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 40417686
Query: 249 cc 250
||
Sbjct: 40417687 cc 40417688
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 gagctctccgtcctctgcgacgccga 228
|||||| |||||||||||||||||||
Sbjct: 30354405 gagctcgccgtcctctgcgacgccga 30354380
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 5564870 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 5564811
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5564810 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 5564751
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5564750 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 5564691
Query: 284 ag 285
||
Sbjct: 5564690 ag 5564689
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489A05
Length = 158815
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 32721 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 32662
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 32661 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 32602
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 32601 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 32542
Query: 284 ag 285
||
Sbjct: 32541 ag 32540
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 164088 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 164029
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 164028 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 163969
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 163968 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 163909
Query: 284 ag 285
||
Sbjct: 163908 ag 163907
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 5314515 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 5314574
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 5314575 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 5314634
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 5314635 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 5314694
Query: 283 ca 284
||
Sbjct: 5314695 ca 5314696
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 5317260 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 5317319
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 5317320 gagccaggaag 5317330
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 5317008 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 5317067
Query: 429 ctaaca 434
| ||||
Sbjct: 5317068 ccaaca 5317073
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 5317559 ctgctggcttcagagatcaattacatggccaaaaggg 5317595
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 5316283 cagtgtgaaggctacaattgacaggtacaagaaggc 5316318
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 5318126 ctggacatgaagtgcttcttccc 5318148
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 5318015 gagcagcagctgcagcaggtgacggtggccc 5318045
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 5317743 ggagattgagcttcagaacgacaacatggacctcagaaccaag 5317785
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 5556211 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 5556152
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5556151 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 5556092
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5556091 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 5556032
Query: 284 ag 285
||
Sbjct: 5556031 ag 5556030
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 5314515 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 5314574
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 5314575 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 5314634
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 5314635 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 5314694
Query: 283 ca 284
||
Sbjct: 5314695 ca 5314696
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 5317260 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 5317319
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 5317320 gagccaggaag 5317330
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 5317008 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 5317067
Query: 429 ctaaca 434
| ||||
Sbjct: 5317068 ccaaca 5317073
Score = 58.0 bits (29), Expect = 1e-005
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 132 ggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctca 191
||||||||||| | |||||||||||| ||||||| |||||| || ||||| ||||
Sbjct: 15774553 ggatcgagaacgaggtgagccggcaggtgaccttctccaagcggcggccggggctgctca 15774494
Query: 192 agaaggcgtacgagctctccgtcctctgcgacg 224
||||||| ||||| || |||||||||||||||
Sbjct: 15774493 agaaggcccacgagatcgccgtcctctgcgacg 15774461
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 5317559 ctgctggcttcagagatcaattacatggccaaaaggg 5317595
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||||||||||||||||||| ||| | || ||||| ||||||| |||||||||
Sbjct: 15373612 gattgagatcaagaggatcgagaacttcaccaaccaccaggtgaccttctccaagcgccg 15373553
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 5316283 cagtgtgaaggctacaattgacaggtacaagaaggc 5316318
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 5318126 ctggacatgaagtgcttcttccc 5318148
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 5318015 gagcagcagctgcagcaggtgacggtggccc 5318045
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 5317743 ggagattgagcttcagaacgacaacatggacctcagaaccaag 5317785
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 5556211 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 5556152
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5556151 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 5556092
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5556091 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 5556032
Query: 284 ag 285
||
Sbjct: 5556031 ag 5556030
Score = 163 bits (82), Expect = 3e-037
Identities = 148/170 (87%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| | ||||||||| ||||| ||||||||||| |||||||| ||||| ||
Sbjct: 37964007 catggggagggggaagattgagataaagagaatcgagaacaagacgagccgtcaggtgac 37964066
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||||| | |||||||| || |||||||| ||||||||| || | ||||||||
Sbjct: 37964067 cttctgcaagcgcaggaatgggctgctgaagaaggcctacgagctcgccatactctgcga 37964126
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagt 272
||| ||| | || ||| |||||||||||||||| ||||||||||| ||||
Sbjct: 37964127 cgctgagatcgcactcatcgtcttctccagccgaggacgcctctatgagt 37964176
Score = 73.8 bits (37), Expect = 2e-010
Identities = 111/133 (83%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaat 181
||||||||||||||||||||| ||| | ||| ||||| ||||||| ||||||| | |
Sbjct: 37788542 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 37788483
Query: 182 gggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggt-ggcgctcgt 240
||| ||||||||||||| |||| || |||||| |||||||||||||| |||| ||||
Sbjct: 37788482 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcg-tcgt 37788424
Query: 241 cgtcttctccagc 253
| |||||||||||
Sbjct: 37788423 catcttctccagc 37788411
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 189 tcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttct 248
|||||||||||| ||||||| || | |||||||||| |||||||||||| |||||||||
Sbjct: 39821587 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 39821646
Query: 249 cc 250
||
Sbjct: 39821647 cc 39821648
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 gagctctccgtcctctgcgacgccga 228
|||||| |||||||||||||||||||
Sbjct: 29944743 gagctcgccgtcctctgcgacgccga 29944718
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||| | ||| ||||| ||| |||||||||||| |||| ||||||||| |||
Sbjct: 5567248 atggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgacc 5567189
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5567188 ttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgac 5567129
Query: 224 gccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaac 283
|||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5567128 gccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaac 5567069
Query: 284 ag 285
||
Sbjct: 5567068 ag 5567067
Score = 163 bits (82), Expect = 3e-037
Identities = 148/170 (87%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| | ||||||||| ||||| ||||||||||| |||||||| ||||| ||
Sbjct: 38495120 catggggagggggaagattgagataaagagaatcgagaacaagacgagccgtcaggtgac 38495179
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||||| | |||||||| || |||||||| ||||||||| || | ||||||||
Sbjct: 38495180 cttctgcaagcgcaggaatgggctgctgaagaaggcctacgagctcgccatactctgcga 38495239
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagt 272
||| ||| | || ||| |||||||||||||||| ||||||||||| ||||
Sbjct: 38495240 cgctgagatcgcactcatcgtcttctccagccgaggacgcctctatgagt 38495289
Score = 73.8 bits (37), Expect = 2e-010
Identities = 111/133 (83%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaat 181
||||||||||||||||||||| ||| | ||| ||||| ||||||| ||||||| | |
Sbjct: 38317058 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 38316999
Query: 182 gggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggt-ggcgctcgt 240
||| ||||||||||||| |||| || |||||| |||||||||||||| |||| ||||
Sbjct: 38316998 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcg-tcgt 38316940
Query: 241 cgtcttctccagc 253
| |||||||||||
Sbjct: 38316939 catcttctccagc 38316927
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 189 tcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttct 248
|||||||||||| ||||||| || | |||||||||| |||||||||||| |||||||||
Sbjct: 40336957 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 40337016
Query: 249 cc 250
||
Sbjct: 40337017 cc 40337018
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 gagctctccgtcctctgcgacgccga 228
|||||| |||||||||||||||||||
Sbjct: 30273735 gagctcgccgtcctctgcgacgccga 30273710
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 5585171 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 5585230
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 5585231 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 5585290
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 5585291 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 5585350
Query: 283 ca 284
||
Sbjct: 5585351 ca 5585352
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 5587916 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 5587975
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 5587976 gagccaggaag 5587986
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 5587664 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 5587723
Query: 429 ctaaca 434
| ||||
Sbjct: 5587724 ccaaca 5587729
Score = 58.0 bits (29), Expect = 1e-005
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 132 ggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctca 191
||||||||||| | |||||||||||| ||||||| |||||| || ||||| ||||
Sbjct: 19156118 ggatcgagaacgaggtgagccggcaggtgaccttctccaagcggcggccggggctgctca 19156059
Query: 192 agaaggcgtacgagctctccgtcctctgcgacg 224
||||||| ||||| || |||||||||||||||
Sbjct: 19156058 agaaggcccacgagatcgccgtcctctgcgacg 19156026
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 5588215 ctgctggcttcagagatcaattacatggccaaaaggg 5588251
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||||||||||||||||||| ||| | || ||||| ||||||| |||||||||
Sbjct: 18670041 gattgagatcaagaggatcgagaacttcaccaaccaccaggtgaccttctccaagcgccg 18669982
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 5586939 cagtgtgaaggctacaattgacaggtacaagaaggc 5586974
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 5588782 ctggacatgaagtgcttcttccc 5588804
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 5588671 gagcagcagctgcagcaggtgacggtggccc 5588701
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 5588399 ggagattgagcttcagaacgacaacatggacctcagaaccaag 5588441
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 234 bits (118), Expect = 9e-059
Identities = 166/182 (91%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 5585160 catggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgac 5585219
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 5585220 cttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcga 5585279
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 5585280 tgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaa 5585339
Query: 283 ca 284
||
Sbjct: 5585340 ca 5585341
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 465 tgtcactcaaagagctgaagcagctggagagccgccttgagaaaggcatctctaagatca 524
||||||| || ||||||||||| || || |||||||| ||||||||||| || |||||||
Sbjct: 5587905 tgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatca 5587964
Query: 525 gggccaggaag 535
| |||||||||
Sbjct: 5587965 gagccaggaag 5587975
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 369 agcaattctaccagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaaca 428
|||||| ||||||||| || || || ||||||||| ||||||| ||||||||||||||||
Sbjct: 5587653 agcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaaca 5587712
Query: 429 ctaaca 434
| ||||
Sbjct: 5587713 ccaaca 5587718
Score = 58.0 bits (29), Expect = 1e-005
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 132 ggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctca 191
||||||||||| | |||||||||||| ||||||| |||||| || ||||| ||||
Sbjct: 19082345 ggatcgagaacgaggtgagccggcaggtgaccttctccaagcggcggccggggctgctca 19082286
Query: 192 agaaggcgtacgagctctccgtcctctgcgacg 224
||||||| ||||| || |||||||||||||||
Sbjct: 19082285 agaaggcccacgagatcgccgtcctctgcgacg 19082253
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 542 ctgctggctgccgagatcaattacatggccaaaaggg 578
||||||||| | |||||||||||||||||||||||||
Sbjct: 5588204 ctgctggcttcagagatcaattacatggccaaaaggg 5588240
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||||||||||||||||||| ||| | || ||||| ||||||| |||||||||
Sbjct: 18596267 gattgagatcaagaggatcgagaacttcaccaaccaccaggtgaccttctccaagcgccg 18596208
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 283 cagtgtgaaggctacgatcgagaggtacaagaaggc 318
||||||||||||||| || || ||||||||||||||
Sbjct: 5586928 cagtgtgaaggctacaattgacaggtacaagaaggc 5586963
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 758 ctggacatgaagtgcttcttccc 780
|||||||||||||||||||||||
Sbjct: 5588771 ctggacatgaagtgcttcttccc 5588793
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 632 gagcaacagctgcagcaggtgactgtggccc 662
||||| ||||||||||||||||| |||||||
Sbjct: 5588660 gagcagcagctgcagcaggtgacggtggccc 5588690
Score = 46.1 bits (23), Expect = 0.043
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 577 ggagactgagcttcagaatgaccacatgaacctcaggaccaag 619
||||| |||||||||||| ||| ||||| ||||||| ||||||
Sbjct: 5588388 ggagattgagcttcagaacgacaacatggacctcagaaccaag 5588430
>dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027E19, full
insert sequence
Length = 1071
Score = 210 bits (106), Expect = 1e-051
Identities = 181/206 (87%)
Strand = Plus / Plus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 237 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 296
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 297 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 356
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgtg 289
|| || |||||||||||||||||||| || ||||||||||||||| |||||||||| |||
Sbjct: 357 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacagcgtg 416
Query: 290 aaggctacgatcgagaggtacaagaa 315
|||| || || ||||||||||||||
Sbjct: 417 aaggaaactattgagaggtacaagaa 442
>dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
factor OsMADS58, complete cds
Length = 1181
Score = 210 bits (106), Expect = 1e-051
Identities = 181/206 (87%)
Strand = Plus / Plus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 237 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 296
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 297 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 356
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgtg 289
|| || |||||||||||||||||||| || ||||||||||||||| |||||||||| |||
Sbjct: 357 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacagcgtg 416
Query: 290 aaggctacgatcgagaggtacaagaa 315
|||| || || ||||||||||||||
Sbjct: 417 aaggaaactattgagaggtacaagaa 442
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0015G13, complete sequence
Length = 143966
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 77133 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 77074
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 77073 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 77014
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 77013 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 76958
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 155 caggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtc 214
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct: 53734 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 53675
Query: 215 ctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
|||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 53674 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 53615
Query: 275 gccaacaacag 285
||||||||||
Sbjct: 53614 tccaacaacag 53604
>gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011127, whole
genome shotgun sequence
Length = 7784
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 1309 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 1250
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1249 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 1190
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 1189 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 1134
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 908604 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 908545
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 908544 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 908485
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 908484 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 908429
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 155 caggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtc 214
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct: 885205 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 885146
Query: 215 ctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
|||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 885145 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 885086
Query: 275 gccaacaacag 285
||||||||||
Sbjct: 885085 tccaacaacag 885075
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 6266469 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 6266410
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 6266409 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 6266350
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 6266349 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6266294
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 155 caggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtc 214
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct: 6240962 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6240903
Query: 215 ctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
|||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 6240902 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6240843
Query: 275 gccaacaacag 285
||||||||||
Sbjct: 6240842 tccaacaacag 6240832
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 6266469 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 6266410
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 6266409 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 6266350
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 6266349 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6266294
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 155 caggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtc 214
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct: 6240962 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6240903
Query: 215 ctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
|||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 6240902 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6240843
Query: 275 gccaacaacag 285
||||||||||
Sbjct: 6240842 tccaacaacag 6240832
Score = 65.9 bits (33), Expect = 5e-008
Identities = 110/133 (82%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaat 181
||||||||||||||||||||| |||| ||||||||| || |||| |||||||||
Sbjct: 20269067 gagatcaagaggatcgagaactcgacgaaccggcaggtgacgttctcgaagcgccgcgcc 20269126
Query: 182 gggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggt-ggcgctcgt 240
||| | ||||||||||| |||| || ||| ||||||||||||||||| |||| ||||
Sbjct: 20269127 gggatactcaagaaggcccgcgagatcggcgtgctctgcgacgccgaggtcggcg-tcgt 20269185
Query: 241 cgtcttctccagc 253
| |||||||||||
Sbjct: 20269186 catcttctccagc 20269198
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 190 bits (96), Expect = 1e-045
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 110 aggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgc 169
||||||| ||||||||||||| | |||||||||| |||| ||| || || |||||||||
Sbjct: 6375394 aggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgc 6375335
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 6375334 aagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgag 6375275
Query: 230 gtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacag 285
|| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 6375274 gtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6375219
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 155 caggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtc 214
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct: 6351995 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6351936
Query: 215 ctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
|||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 6351935 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6351876
Query: 275 gccaacaacag 285
||||||||||
Sbjct: 6351875 tccaacaacag 6351865
Score = 65.9 bits (33), Expect = 5e-008
Identities = 110/133 (82%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaat 181
||||||||||||||||||||| |||| ||||||||| || |||| |||||||||
Sbjct: 20615380 gagatcaagaggatcgagaactcgacgaaccggcaggtgacgttctcgaagcgccgcgcc 20615439
Query: 182 gggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggt-ggcgctcgt 240
||| | ||||||||||| |||| || ||| ||||||||||||||||| |||| ||||
Sbjct: 20615440 gggatactcaagaaggcccgcgagatcggcgtgctctgcgacgccgaggtcggcg-tcgt 20615498
Query: 241 cgtcttctccagc 253
| |||||||||||
Sbjct: 20615499 catcttctccagc 20615511
>gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-J13,
mRNA sequence
Length = 519
Score = 180 bits (91), Expect = 1e-042
Identities = 139/155 (89%)
Strand = Plus / Plus
Query: 161 accttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgc 220
||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 50 accttctgcaagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgc 109
Query: 221 gacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaac 280
|| |||||||| || |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct: 110 gatgccgaggtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaac 169
Query: 281 aacagtgtgaaggctacgatcgagaggtacaagaa 315
||||| ||||||| || || ||||||||||||||
Sbjct: 170 aacagcgtgaaggaaactattgagaggtacaagaa 204
>dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057B01, full
insert sequence
Length = 963
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 32 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 91
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 92 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 151
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 152 gcggaggtggcgctcatcatcttctccagccg 183
>gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213
mRNA, complete cds
Length = 1134
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 138 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 197
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 198 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 257
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 258 gcggaggtggcgctcatcatcttctccagccg 289
>gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010373, whole
genome shotgun sequence
Length = 17272
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 15066 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 15007
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 15006 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 14947
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 14946 gcggaggtggcgctcatcatcttctccagccg 14915
>ref|XM_473638.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 750
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 1 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 60
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 120
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 121 gcggaggtggcgctcatcatcttctccagccg 152
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 3058313 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 3058372
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3058373 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 3058432
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 3058433 gcggaggtggcgctcatcatcttctccagccg 3058464
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 7086150 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 7086209
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 7086210 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 7086269
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 7086270 gcggaggtggcgctcatcatcttctccagccg 7086301
Score = 81.8 bits (41), Expect = 8e-013
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| || |||| ||||| ||||| ||| || |||||||||| | |||
Sbjct: 891727 acgagccggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggag 891786
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|| || |||| |||||||||||||| | |||||| ||||||||||| ||| ||||||
Sbjct: 891787 ctggccatcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctc 891846
Query: 266 tacgagtacgcca 278
|||||||| ||||
Sbjct: 891847 tacgagtatgcca 891859
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 26230249 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 26230308
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 26230309 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 26230368
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 26230369 gcggaggtggcgctcatcatcttctccagccg 26230400
Score = 81.8 bits (41), Expect = 8e-013
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| || |||| ||||| ||||| ||| || |||||||||| | |||
Sbjct: 20035826 acgagccggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggag 20035885
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|| || |||| |||||||||||||| | |||||| ||||||||||| ||| ||||||
Sbjct: 20035886 ctggccatcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctc 20035945
Query: 266 tacgagtacgcca 278
|||||||| ||||
Sbjct: 20035946 tacgagtatgcca 20035958
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23,
complete sequence
Length = 149892
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 84618 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 84677
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 84678 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 84737
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 84738 gcggaggtggcgctcatcatcttctccagccg 84769
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 174 bits (88), Expect = 7e-041
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacc 163
||||||||||||||| ||||| | ||| | ||||||||||| | | |||||||||||||
Sbjct: 29281572 atggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcacc 29281631
Query: 164 ttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgac 223
|||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 29281632 ttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgac 29281691
Query: 224 gccgaggtggcgctcgtcgtcttctccagccg 255
|| |||||||||||| || |||||||||||||
Sbjct: 29281692 gcggaggtggcgctcatcatcttctccagccg 29281723
Score = 81.8 bits (41), Expect = 8e-013
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| || |||| ||||| ||||| ||| || |||||||||| | |||
Sbjct: 23015089 acgagccggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggag 23015148
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|| || |||| |||||||||||||| | |||||| ||||||||||| ||| ||||||
Sbjct: 23015149 ctggccatcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctc 23015208
Query: 266 tacgagtacgcca 278
|||||||| ||||
Sbjct: 23015209 tacgagtatgcca 23015221
>gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M08 3', mRNA sequence
Length = 601
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 257 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 316
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 317 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 376
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 377 tacgagttcgcca 389
>gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14A21 5', mRNA sequence
Length = 764
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 300 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 359
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 360 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 419
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 420 tacgagttcgcca 432
>gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16G22 5', mRNA sequence
Length = 804
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 298 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 357
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 358 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 417
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 418 tacgagttcgcca 430
>gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--01-D10, mRNA sequence
Length = 583
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 343 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 402
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 403 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 462
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 463 tacgagttcgcca 475
>gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-C18, mRNA sequence
Length = 565
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 326 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 385
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 386 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 445
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 446 tacgagttcgcca 458
>dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P08, full
insert sequence
Length = 1293
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 323 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 382
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 383 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 442
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 443 tacgagttcgcca 455
>gb|AY345224.1| Oryza sativa (japonica cultivar-group) transcription factor MADS56
mRNA, complete cds
Length = 1311
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 327 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 386
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 387 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 446
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 447 tacgagttcgcca 459
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
sequence
Length = 105841
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 146 acgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggcgtacgag 205
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 59950 acgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgag 60009
Query: 206 ctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctc 265
|||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct: 60010 ctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctc 60069
Query: 266 tacgagtacgcca 278
||||||| |||||
Sbjct: 60070 tacgagttcgcca 60082
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,719,309
Number of Sequences: 438736
Number of extensions: 1719309
Number of successful extensions: 10830
Number of sequences better than 0.5: 351
Number of HSP's better than 0.5 without gapping: 400
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7925
Number of HSP's gapped (non-prelim): 2822
length of query: 1168
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1147
effective length of database: 2,791,206,460
effective search space: 3201513809620
effective search space used: 3201513809620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)