BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB653221.1|CB653221 OSJNEc04A21.r OSJNEc Oryza sativa (j... 400 e-109
gb|CB666956.1|CB666956 OSJNEd14B05.r OSJNEd Oryza sativa (j... 400 e-109
gb|CB674716.1|CB674716 OSJNEe09O17.r OSJNEe Oryza sativa (j... 400 e-109
gb|AF251077.1|AF251077 Oryza sativa dTDP-glucose 4-6-dehydr... 400 e-109
dbj|AK061857.1| Oryza sativa (japonica cultivar-group) cDNA... 400 e-109
dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA... 400 e-109
dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-... 400 e-109
gb|CF311240.1|CF311240 ABF--06-G05.b1 ABF3-overexpressing t... 303 6e-080
gb|CB685001.1|CB685001 OSJNEf15A20.r OSJNEf Oryza sativa (j... 297 4e-078
dbj|AP003535.2| Oryza sativa (japonica cultivar-group) geno... 268 3e-069
gb|AACV01000881.1| Oryza sativa (japonica cultivar-group) c... 268 3e-069
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 268 3e-069
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 268 3e-069
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 268 3e-069
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 268 3e-069
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 268 3e-069
gb|CB661724.1|CB661724 OSJNEd05A04.r OSJNEd Oryza sativa (j... 264 5e-068
dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA... 264 5e-068
dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-... 264 5e-068
gb|CF323550.1|CF323550 HDN--04-C09.g1 OsHDAC1-overexpressin... 252 2e-064
dbj|AK099614.1| Oryza sativa (japonica cultivar-group) cDNA... 252 2e-064
dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA... 252 2e-064
dbj|AB183706.1| Oryza sativa (japonica cultivar-group) UXS-... 252 2e-064
gb|CB646119.1|CB646119 OSJNEb08F06.r OSJNEb Oryza sativa (j... 246 1e-062
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 210 7e-052
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 210 7e-052
gb|AACV01017003.1| Oryza sativa (japonica cultivar-group) c... 210 7e-052
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 210 7e-052
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 210 7e-052
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 210 7e-052
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 210 7e-052
gb|CB654314.1|CB654314 OSJNEc06H06.r OSJNEc Oryza sativa (j... 206 1e-050
gb|CB654313.1|CB654313 OSJNEc06H06.f OSJNEc Oryza sativa (j... 190 6e-046
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 188 3e-045
gb|AACV01011960.1| Oryza sativa (japonica cultivar-group) c... 188 3e-045
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 188 3e-045
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 188 3e-045
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 188 3e-045
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 188 3e-045
gb|CB653220.1|CB653220 OSJNEc04A21.f OSJNEc Oryza sativa (j... 170 6e-040
gb|AU225848.1|AU225848 AU225848 Oryza sativa Koshihikari pi... 165 4e-038
gb|CB646118.1|CB646118 OSJNEb08F06.f OSJNEb Oryza sativa (j... 115 3e-023
gb|CF330800.1|CF330800 NACL--06-K19.b1 Rice callus plasmid ... 100 2e-018
gb|CA999040.1|CA999040 S234M_D01 Rice cold stress germinati... 98 7e-018
gb|AU173448.1|AU173448 AU173448 Rice root Oryza sativa (jap... 92 4e-016
gb|CF303741.1|CF303741 ABF1--03-B12.g1 ABF3-overexpressing ... 92 4e-016
gb|AU173188.1|AU173188 AU173188 Rice root Oryza sativa (jap... 86 3e-014
dbj|AK071034.1| Oryza sativa (japonica cultivar-group) cDNA... 76 3e-011
gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbar... 76 3e-011
gb|AACV01006352.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
dbj|AB167397.1| Oryza sativa (japonica cultivar-group) UXS-... 76 3e-011
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CF323882.1|CF323882 HDN--05-A09.g1 OsHDAC1-overexpressin... 60 2e-006
gb|CB656571.1|CB656571 OSJNEc11B09.r OSJNEc Oryza sativa (j... 58 6e-006
dbj|AK069181.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK104675.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AB079063.2| Oryza sativa (japonica cultivar-group) UXS-... 58 6e-006
ref|NM_190499.1| Oryza sativa (japonica cultivar-group), p... 58 6e-006
gb|CX728359.1|CX728359 OSJNEf05A21.r OSJNEf Oryza sativa (j... 44 0.093
>gb|CB653221.1|CB653221 OSJNEc04A21.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04A21 3', mRNA sequence
Length = 782
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 745 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 686
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 685 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 626
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 625 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 566
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 565 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 506
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 505 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 446
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 445 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 386
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 385 gaccaggaag 376
>gb|CB666956.1|CB666956 OSJNEd14B05.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14B05 3', mRNA sequence
Length = 784
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 756 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 697
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 696 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 637
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 636 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 577
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 576 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 517
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 516 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 457
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 456 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 397
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 396 gaccaggaag 387
>gb|CB674716.1|CB674716 OSJNEe09O17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09O17 3', mRNA sequence
Length = 788
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 752 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 693
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 692 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 633
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 632 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 573
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 572 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 513
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 512 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 453
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 452 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 393
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 392 gaccaggaag 383
>gb|AF251077.1|AF251077 Oryza sativa dTDP-glucose 4-6-dehydratase-like protein mRNA,
partial cds
Length = 773
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 324 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 383
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 384 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 443
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 444 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 503
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 504 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 563
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 564 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 623
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 624 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 683
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 684 gaccaggaag 693
>dbj|AK061857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G06, full
insert sequence
Length = 1057
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 329 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 388
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 389 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 448
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 449 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 508
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 509 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 568
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 569 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 628
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 629 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 688
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 689 gaccaggaag 698
>dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I19, full
insert sequence
Length = 1820
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1054 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 1113
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 1114 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 1173
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 1174 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 1233
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 1234 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 1293
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 1294 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 1353
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 1354 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 1413
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 1414 gaccaggaag 1423
>dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-2 mRNA for UDP-glucuronic
acid decarboxylase, complete cds
Length = 1336
Score = 400 bits (202), Expect = e-109
Identities = 328/370 (88%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 927 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 986
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 987 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 1046
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 1047 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 1106
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 1107 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 1166
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 1167 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 1226
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 1227 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 1286
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 1287 gaccaggaag 1296
>gb|CF311240.1|CF311240 ABF--06-G05.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-G05, mRNA sequence
Length = 589
Score = 303 bits (153), Expect = 6e-080
Identities = 260/296 (87%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 294 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 353
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 354 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 413
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| | || || || || |||| |||||||||||||||||||||
Sbjct: 414 ataggaccatttaacctgngtaatccgggtgagttcaccatgctggagctggctaaggtt 473
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 474 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 533
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcc 301
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 534 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcc 589
>gb|CB685001.1|CB685001 OSJNEf15A20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15A20 3', mRNA sequence
Length = 723
Score = 297 bits (150), Expect = 4e-078
Identities = 270/310 (87%)
Strand = Plus / Minus
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 723 agctttcaatatgtctttgatttggtggaagggttgatgagcttgatggaaggggagcac 664
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|| || || || ||||| || || || || || |||| |||||||||||||||||||||
Sbjct: 663 ataggaccatttaacctgggtaatccgggtgagttcaccatgctggagctggctaaggtt 604
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| || || | || | ||| ||||||||||||||||| || ||||||
Sbjct: 603 gtccaggacaccattgatccgaatgctcgcattgagttccgtccgaacactgcggatgat 544
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 543 ccacacaagcgcaagcctgacatcacccgtgcgaaagagctcctgggctgggagcccaag 484
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 483 gttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttggc 424
Query: 366 gaccaggaag 375
||||||||||
Sbjct: 423 gaccaggaag 414
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1012D10
Length = 168267
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 102711 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 102652
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 102651 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 102592
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 102591 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 102532
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 102531 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 102472
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 102471 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 102425
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 103197 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 103138
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 103137 tcaatatgtctctgatttggtgg 103115
>gb|AACV01000881.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000881, whole
genome shotgun sequence
Length = 15617
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 13203 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 13262
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 13263 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 13322
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 13323 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 13382
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 13383 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 13442
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 13443 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 13489
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12717 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 12776
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 12777 tcaatatgtctctgatttggtgg 12799
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 11888208 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 11888149
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 11888148 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 11888089
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 11888088 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 11888029
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 11888028 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 11887969
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 11887968 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 11887922
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11888694 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 11888635
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 11888634 tcaatatgtctctgatttggtgg 11888612
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 397433 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 397374
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 397373 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 397314
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 397313 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 397254
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 397253 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 397194
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 397193 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 397147
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 397919 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 397860
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 397859 tcaatatgtctctgatttggtgg 397837
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 308233 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 308174
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 308173 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 308114
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 308113 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 308054
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 308053 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 307994
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 307993 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 307947
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 308719 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 308660
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 308659 tcaatatgtctctgatttggtgg 308637
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 11924728 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 11924669
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 11924668 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 11924609
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 11924608 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 11924549
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 11924548 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 11924489
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 11924488 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 11924442
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11925214 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 11925155
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 11925154 tcaatatgtctctgatttggtgg 11925132
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 268 bits (135), Expect = 3e-069
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||||||| |||||| | ||||||||||||||||| || || || ||||| || ||
Sbjct: 11890426 ggtggaagggttgatgagcttgatggaaggggagcacataggaccatttaacctgggtaa 11890367
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
|| || || |||| ||||||||||||||||||||| |||||||||||||| || || |
Sbjct: 11890366 tccgggtgagttcaccatgctggagctggctaaggttgtccaggacaccattgatccgaa 11890307
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|| | ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 11890306 tgctcgcattgagttccgtccgaacactgcggatgatccacacaagcgcaagcctgacat 11890247
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
|| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 11890246 cacccgtgcgaaagagctcctgggctgggagcccaaggttcccctgcgtgagggccttcc 11890187
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
|| |||||| || |||||||||||||| ||||| || ||||||||||
Sbjct: 11890186 cctcatggttaccgacttccgcaaacgcatctttggcgaccaggaag 11890140
Score = 133 bits (67), Expect = 1e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 11 tcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11890912 tcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactaggagctt 11890853
Query: 71 tcaatatgtctcagatttggtgg 93
|||||||||||| ||||||||||
Sbjct: 11890852 tcaatatgtctctgatttggtgg 11890830
>gb|CB661724.1|CB661724 OSJNEd05A04.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05A04 3', mRNA sequence
Length = 831
Score = 264 bits (133), Expect = 5e-068
Identities = 307/365 (84%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct: 628 gttgctcaggctttgaggaaggagcctttgacggtttacggtgatggcaagcagaccagg 569
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||||||||| ||| |||| || || |||||| |||||||||||| ||||||
Sbjct: 568 agtttccaatatgtctctgatctggttgagggattgatgaggctcatggaaggtgagcac 509
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| |||||||| || |||||||| || |||| ||||||||||||||| |||||
Sbjct: 508 gtagggccattcaacctgggtaaccctggtgagttcaccatgctggagctggccaaggtt 449
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || | |||||||||||||| |||||| || ||
Sbjct: 448 gtccaggacaccatcgaccctaacgcaaagatcgagttccgtcccaacacccaggacgac 389
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|||||||||||||||||||||||| |||| || || |||||||| || |||||||| |||
Sbjct: 388 ccgcacaagcgcaagcctgacatcggccgtgccaaggagctccttgggtgggagccaaag 329
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| || |||| |||| ||||||| ||||||||| ||||||||||| || || |||||
Sbjct: 328 atccctctccacaagggtcttcccctcatggtcaccgacttccgcaagcgcattttcggt 269
Query: 366 gacca 370
|||||
Sbjct: 268 gacca 264
>dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O13, full
insert sequence
Length = 1734
Score = 264 bits (133), Expect = 5e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct: 1097 gttgctcaggctttgaggaaggagcctttgacggtttacggtgatggcaagcagaccagg 1156
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||||||||| ||| |||| || || |||||| |||||||||||| ||||||
Sbjct: 1157 agtttccaatatgtctctgatctggttgagggattgatgaggctcatggaaggtgagcac 1216
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| |||||||| || |||||||| || |||| ||||||||||||||| |||||
Sbjct: 1217 gtagggccattcaacctgggtaaccctggtgagttcaccatgctggagctggccaaggtt 1276
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || | |||||||||||||| |||||| || ||
Sbjct: 1277 gtccaggacaccatcgaccctaacgcaaagatcgagttccgtcccaacacccaggacgac 1336
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|||||||||||||||||||||||| |||| || || |||||||| || |||||||| |||
Sbjct: 1337 ccgcacaagcgcaagcctgacatcggccgtgccaaggagctccttgggtgggagccaaag 1396
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| || |||| |||| ||||||| ||||||||| ||||||||||| || || |||||
Sbjct: 1397 atccctctccacaagggtcttcccctcatggtcaccgacttccgcaagcgcattttcggt 1456
Query: 366 gacca 370
|||||
Sbjct: 1457 gacca 1461
>dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-5 mRNA for UDP-glucuronic
acid decarboxylase, complete cds
Length = 1555
Score = 264 bits (133), Expect = 5e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct: 1023 gttgctcaggctttgaggaaggagcctttgacggtttacggtgatggcaagcagaccagg 1082
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||||||||| ||| |||| || || |||||| |||||||||||| ||||||
Sbjct: 1083 agtttccaatatgtctctgatctggttgagggattgatgaggctcatggaaggtgagcac 1142
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| |||||||| || |||||||| || |||| ||||||||||||||| |||||
Sbjct: 1143 gtagggccattcaacctgggtaaccctggtgagttcaccatgctggagctggccaaggtt 1202
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || | |||||||||||||| |||||| || ||
Sbjct: 1203 gtccaggacaccatcgaccctaacgcaaagatcgagttccgtcccaacacccaggacgac 1262
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|||||||||||||||||||||||| |||| || || |||||||| || |||||||| |||
Sbjct: 1263 ccgcacaagcgcaagcctgacatcggccgtgccaaggagctccttgggtgggagccaaag 1322
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| || |||| |||| ||||||| ||||||||| ||||||||||| || || |||||
Sbjct: 1323 atccctctccacaagggtcttcccctcatggtcaccgacttccgcaagcgcattttcggt 1382
Query: 366 gacca 370
|||||
Sbjct: 1383 gacca 1387
>gb|CF323550.1|CF323550 HDN--04-C09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-C09, mRNA sequence
Length = 615
Score = 252 bits (127), Expect = 2e-064
Identities = 301/359 (83%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 140 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 199
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| ||||||| ||| |||||||||| ||||||||||||||| | |||
Sbjct: 200 cagtacgtctccgatctggtggaggggttgatgaagctgatggaaggggagcacgtaggg 259
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| ||||||||||| || |||||||| |||
Sbjct: 260 ccattcaacctgggaaacccaggggagttcacaatgctggagcttgccaaggtggtgcag 319
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
||||||||||||||| | |||| ||||||||| | ||||||||||| || || ||||||
Sbjct: 320 gacaccatcgacccaaacgcgcggatcgagttcaggccgaacaccgccgacgacccgcac 379
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttccc 311
||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct: 380 aagcggaagccggacatcagccgcgccaaggagctcctcggctgggagcccaagatcccc 439
Query: 312 ctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
|||| ||||||| || | ||||||| ||||||||| | || |||||||| |||||
Sbjct: 440 ctccacaagggcctcccgctcatggtccaggacttccgcgaccgcatcttcggcgacca 498
>dbj|AK099614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050E02, full
insert sequence
Length = 1965
Score = 252 bits (127), Expect = 2e-064
Identities = 301/359 (83%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 1150 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 1209
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| ||||||| ||| |||||||||| ||||||||||||||| | |||
Sbjct: 1210 cagtacgtctccgatctggtggaggggttgatgaagctgatggaaggggagcacgtaggg 1269
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| ||||||||||| || |||||||| |||
Sbjct: 1270 ccattcaacctgggaaacccaggggagttcacaatgctggagcttgccaaggtggtgcag 1329
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
||||||||||||||| | |||| ||||||||| | ||||||||||| || || ||||||
Sbjct: 1330 gacaccatcgacccaaacgcgcggatcgagttcaggccgaacaccgccgacgacccgcac 1389
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttccc 311
||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct: 1390 aagcggaagccggacatcagccgcgccaaggagctcctcggctgggagcccaagatcccc 1449
Query: 312 ctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
|||| ||||||| || | ||||||| ||||||||| | || |||||||| |||||
Sbjct: 1450 ctccacaagggcctcccgctcatggtccaggacttccgcgaccgcatcttcggcgacca 1508
>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full
insert sequence
Length = 2031
Score = 252 bits (127), Expect = 2e-064
Identities = 301/359 (83%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 1319 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 1378
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| ||||||| ||| |||||||||| ||||||||||||||| | |||
Sbjct: 1379 cagtacgtctccgatctggtggaggggttgatgaagctgatggaaggggagcacgtaggg 1438
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| ||||||||||| || |||||||| |||
Sbjct: 1439 ccattcaacctgggaaacccaggggagttcacaatgctggagcttgccaaggtggtgcag 1498
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
||||||||||||||| | |||| ||||||||| | ||||||||||| || || ||||||
Sbjct: 1499 gacaccatcgacccaaacgcgcggatcgagttcaggccgaacaccgccgacgacccgcac 1558
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttccc 311
||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct: 1559 aagcggaagccggacatcagccgcgccaaggagctcctcggctgggagcccaagatcccc 1618
Query: 312 ctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
|||| ||||||| || | ||||||| ||||||||| | || |||||||| |||||
Sbjct: 1619 ctccacaagggcctcccgctcatggtccaggacttccgcgaccgcatcttcggcgacca 1677
>dbj|AB183706.1| Oryza sativa (japonica cultivar-group) UXS-6 mRNA for UDP-glucuronic
acid decarboxylase, complete cds
Length = 1498
Score = 252 bits (127), Expect = 2e-064
Identities = 301/359 (83%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 1011 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 1070
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| ||||||| ||| |||||||||| ||||||||||||||| | |||
Sbjct: 1071 cagtacgtctccgatctggtggaggggttgatgaagctgatggaaggggagcacgtaggg 1130
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| ||||||||||| || |||||||| |||
Sbjct: 1131 ccattcaacctgggaaacccaggggagttcacaatgctggagcttgccaaggtggtgcag 1190
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
||||||||||||||| | |||| ||||||||| | ||||||||||| || || ||||||
Sbjct: 1191 gacaccatcgacccaaacgcgcggatcgagttcaggccgaacaccgccgacgacccgcac 1250
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttccc 311
||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct: 1251 aagcggaagccggacatcagccgcgccaaggagctcctcggctgggagcccaagatcccc 1310
Query: 312 ctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
|||| ||||||| || | ||||||| ||||||||| | || |||||||| |||||
Sbjct: 1311 ctccacaagggcctcccgctcatggtccaggacttccgcgaccgcatcttcggcgacca 1369
>gb|CB646119.1|CB646119 OSJNEb08F06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F06 3', mRNA sequence
Length = 797
Score = 246 bits (124), Expect = 1e-062
Identities = 292/348 (83%)
Strand = Plus / Minus
Query: 23 gaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctc 82
||||||||||||||| || || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 797 gaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatgtctc 738
Query: 83 agatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacct 142
||| |||| || || |||||| |||||||||||| |||||| | ||||| ||||||||
Sbjct: 737 tgatctggttgagggattgatgaggctcatggaaggtgagcacgtagggccattcaacct 678
Query: 143 cggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcga 202
|| |||||||| || |||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 677 gggtaaccctggtgagttcaccatgctggagctggccaaggttgtccaggacaccatcga 618
Query: 203 cccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcc 262
||| | || | |||||||||||||| |||||| || || |||||||||||||||||
Sbjct: 617 ccctaacgcaaagatcgagttccgtcccaacacccaggacgacccgcacaagcgcaagcc 558
Query: 263 tgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgaggg 322
||||||| |||| || || |||||||| || |||||||| ||| | || |||| ||||
Sbjct: 557 tgacatcggccgtgccaaggagctccttgggtgggagccaaagatccctctccacaaggg 498
Query: 323 ccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||||| ||||||||| ||||||||||| || || ||||| |||||
Sbjct: 497 tcttcccctcatggtcaccgacttccgcaagcgcattttcggtgacca 450
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0618H09
Length = 142306
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 1244 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 1303
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 1304 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 1363
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 1364 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 1423
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 1424 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 1483
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 1484 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 1525
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 719 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 778
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 779 cagtacgtctccgatctggt 798
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0037D09
Length = 140470
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 9455 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 9514
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 9515 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 9574
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 9575 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 9634
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 9635 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 9694
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 9695 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 9736
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 8930 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 8989
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 8990 cagtacgtctccgatctggt 9009
>gb|AACV01017003.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017003, whole
genome shotgun sequence
Length = 12138
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 10463 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 10404
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 10403 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 10344
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 10343 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 10284
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 10283 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 10224
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 10223 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 10182
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 10988 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 10929
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 10928 cagtacgtctccgatctggt 10909
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 16056708 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 16056767
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 16056768 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 16056827
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 16056828 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 16056887
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 16056888 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 16056947
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 16056948 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 16056989
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 16056183 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 16056242
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 16056243 cagtacgtctccgatctggt 16056262
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 14029878 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 14029937
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 14029938 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 14029997
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 14029998 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 14030057
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 14030058 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 14030117
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 14030118 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 14030159
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 14029353 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 14029412
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 14029413 cagtacgtctccgatctggt 14029432
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 27429317 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 27429376
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 27429377 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 27429436
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 27429437 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 27429496
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 27429497 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 27429556
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 27429557 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 27429598
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 27428792 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 27428851
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 27428852 cagtacgtctccgatctggt 27428871
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 210 bits (106), Expect = 7e-052
Identities = 238/282 (84%)
Strand = Plus / Plus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||
Sbjct: 28443703 ggtggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaa 28443762
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| ||||||||||| || |||||||| |||||||||||||||||| |
Sbjct: 28443763 cccaggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaa 28443822
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 28443823 cgcgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacat 28443882
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcc 328
||||||||| || |||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 28443883 cagccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctccc 28443942
Query: 329 ccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
| ||||||| ||||||||| | || |||||||| |||||
Sbjct: 28443943 gctcatggtccaggacttccgcgaccgcatcttcggcgacca 28443984
Score = 48.1 bits (24), Expect = 0.006
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 28443178 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 28443237
Query: 72 caatatgtctcagatttggt 91
|| || ||||| ||| ||||
Sbjct: 28443238 cagtacgtctccgatctggt 28443257
>gb|CB654314.1|CB654314 OSJNEc06H06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06H06 3', mRNA sequence
Length = 834
Score = 206 bits (104), Expect = 1e-050
Identities = 236/280 (84%)
Strand = Plus / Minus
Query: 91 tggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaacc 150
|||| ||| |||||||||| ||||||||||||||| | ||||| |||||||| || ||||
Sbjct: 834 tggaggggttgatgaagctgatggaaggggagcacgtagggccattcaacctgggaaacc 775
Query: 151 ctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccagagg 210
| || || |||| ||||||||||| || |||||||| |||||||||||||||||| | |
Sbjct: 774 caggggagttcacaatgctggagcttgccaaggtggtgcaggacaccatcgacccaaacg 715
Query: 211 cgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatca 270
||| ||||||||| | ||||||||||| || || ||||||||||| ||||| |||||||
Sbjct: 714 cgcggatcgagttcaggccgaacaccgccgacgacccgcacaagcggaagccggacatca 655
Query: 271 gccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttcccc 330
||||||| || |||||||||||||||||||||||| | ||||||| ||||||| || |
Sbjct: 654 gccgcgccaaggagctcctcggctgggagcccaagatccccctccacaagggcctcccgc 595
Query: 331 gcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||||| ||||||||| | || |||||||| |||||
Sbjct: 594 tcatggtccaggacttccgcgaccgcatcttcggcgacca 555
>gb|CB654313.1|CB654313 OSJNEc06H06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06H06 5', mRNA sequence
Length = 784
Score = 190 bits (96), Expect = 6e-046
Identities = 219/260 (84%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || || || || || |||||||| ||||||||
Sbjct: 525 caggcactgaggaaggagcccttgacggtgtacggcgacggtaagcagacgaggagcttc 584
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| ||||||| ||| |||||||||| ||||||||||||||| | |||
Sbjct: 585 cagtacgtctccgatctggtggaggggttgatgaagctgatggaaggggagcacgtaggg 644
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| ||||||||||| || |||||||| |||
Sbjct: 645 ccattcaacctgggaaacccaggggagttcacaatgctggagcttgccaaggtggtgcag 704
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
||||||||||||||| | |||| ||||||||| | ||||||||||| || || ||||||
Sbjct: 705 gacaccatcgacccaaacgcgcggatcgagttcaggccgaacaccgccgacgacccgcac 764
Query: 252 aagcgcaagcctgacatcag 271
||||| ||||| ||||||||
Sbjct: 765 aagcggaagccggacatcag 784
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
complete sequence
Length = 164064
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 144072 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 144013
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 144012 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 143953
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 143952 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 143893
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 143892 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 143833
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 143832 ccgacttccgcaagcgcattttcggtgacca 143802
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 144334 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 144275
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 144274 tctctgatctggtg 144261
>gb|AACV01011960.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011960, whole
genome shotgun sequence
Length = 33954
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 9897 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 9838
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 9837 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 9778
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 9777 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 9718
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 9717 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 9658
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 9657 ccgacttccgcaagcgcattttcggtgacca 9627
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 10159 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 10100
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 10099 tctctgatctggtg 10086
>ref|NT_107210.1| Oryza sativa (japonica cultivar-group)
Length = 1353368
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 193304 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 193245
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 193244 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 193185
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 193184 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 193125
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 193124 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 193065
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 193064 ccgacttccgcaagcgcattttcggtgacca 193034
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 193566 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 193507
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 193506 tctctgatctggtg 193493
>gb|CH401205.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000042 genomic
scaffold, whole genome shotgun sequence
Length = 2493951
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 2081627 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 2081568
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 2081567 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 2081508
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 2081507 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 2081448
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 2081447 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 2081388
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 2081387 ccgacttccgcaagcgcattttcggtgacca 2081357
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 2081889 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 2081830
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 2081829 tctctgatctggtg 2081816
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 16887889 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 16887830
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 16887829 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 16887770
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 16887769 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 16887710
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 16887709 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 16887650
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 16887649 ccgacttccgcaagcgcattttcggtgacca 16887619
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 16888151 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 16888092
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 16888091 tctctgatctggtg 16888078
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 188 bits (95), Expect = 3e-045
Identities = 227/271 (83%)
Strand = Plus / Minus
Query: 100 tgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaat 159
|||||| |||||||||||| |||||| | ||||| |||||||| || |||||||| || |
Sbjct: 17199937 tgatgaggctcatggaaggtgagcacgtagggccattcaacctgggtaaccctggtgagt 17199878
Query: 160 tcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcg 219
||| ||||||||||||||| ||||| |||||||||||||||||||| | || | ||||
Sbjct: 17199877 tcaccatgctggagctggccaaggttgtccaggacaccatcgaccctaacgcaaagatcg 17199818
Query: 220 agttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcga 279
|||||||||| |||||| || || |||||||||||||||||||||||| |||| || |
Sbjct: 17199817 agttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgcca 17199758
Query: 280 aagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtca 339
| |||||||| || |||||||| ||| | || |||| |||| ||||||| ||||||||
Sbjct: 17199757 aggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtca 17199698
Query: 340 ctgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || || ||||| |||||
Sbjct: 17199697 ccgacttccgcaagcgcattttcggtgacca 17199667
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 19 tgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatg 78
||||||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 17200199 tgaggaaggagcctttgacggtttacggtgatggcaagcagaccaggagtttccaatatg 17200140
Query: 79 tctcagatttggtg 92
|||| ||| |||||
Sbjct: 17200139 tctctgatctggtg 17200126
>gb|CB653220.1|CB653220 OSJNEc04A21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04A21 5', mRNA sequence
Length = 762
Score = 170 bits (86), Expect = 6e-040
Identities = 113/122 (92%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 637 gttgctcaggcactgaggaaggaacctttgactgtctatggtgatggcaagcagactagg 696
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 697 agctttcaatatgtctctgatttggtggaagggttgatgagcttgatggaaggggagcac 756
Query: 126 at 127
||
Sbjct: 757 at 758
>gb|AU225848.1|AU225848 AU225848 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0879, mRNA sequence
Length = 552
Score = 165 bits (83), Expect = 4e-038
Identities = 209/251 (83%)
Strand = Plus / Minus
Query: 120 gagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggct 179
|||||| | ||||| |||||||| || |||||||| || |||| |||||||||||||||
Sbjct: 548 gagcacgtagggccattcaacctgggtaaccctggtgagttcaccatgctggagctggcc 489
Query: 180 aaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgca 239
||||| |||||||||||||||||||| | || | |||||||||||||| ||||||
Sbjct: 488 aaggttgtccaggacaccatcgaccctaacgcaaagatcgagttccgtcccaacacccag 429
Query: 240 gatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggag 299
|| || |||||||||||||||||||||||| |||| || || |||||||| || ||||||
Sbjct: 428 gacgacccgcacaagcgcaagcctgacatcggccgtgccaaggagctccttgggtgggag 369
Query: 300 cccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatc 359
|| ||| | || |||| |||| ||||||| ||||||||| ||||||||||| || ||
Sbjct: 368 ccaaagatccctctccacaagggtcttcccctcatggtcaccgacttccgcaagcgcatt 309
Query: 360 ttcggggacca 370
||||| |||||
Sbjct: 308 ttcggtgacca 298
>gb|CB646118.1|CB646118 OSJNEb08F06.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F06 5', mRNA sequence
Length = 778
Score = 115 bits (58), Expect = 3e-023
Identities = 124/146 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct: 633 gttgctcaggctttgaggaaggagcctttgacggtttacggtgatggcaagcagaccagg 692
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||||||||| ||| |||| || || |||||| |||||||||| | ||||||
Sbjct: 693 agtttccaatatgtctctgatctggttgagggattgatgacgctcatggaaagtgagcac 752
Query: 126 attgggccgttcaacctcggcaaccc 151
| ||||| |||||||| || |||||
Sbjct: 753 gtagggccattcaacctgggtaaccc 778
>gb|CF330800.1|CF330800 NACL--06-K19.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-K19, mRNA sequence
Length = 572
Score = 99.6 bits (50), Expect = 2e-018
Identities = 119/142 (83%)
Strand = Plus / Plus
Query: 229 cgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcc 288
|||||||||| || || ||||||| ||| ||||| |||||||||||||| || |||||||
Sbjct: 19 cgaacaccgccgacgacccgcacaggcggaagccggacatcagccgcgccaaggagctcc 78
Query: 289 tcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttcc 348
||||||||||||||||| | ||||||| ||||||| || | ||||||| |||||||
Sbjct: 79 tcggctgggagcccaagatccccctccacaagggcctcccgctcatggtccaggacttcc 138
Query: 349 gcaaacgtatcttcggggacca 370
|| | || |||||||| |||||
Sbjct: 139 gcgaccgcatcttcggcgacca 160
>gb|CA999040.1|CA999040 S234M_D01 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 588
Score = 97.6 bits (49), Expect = 7e-018
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 2 ccgcacaagcggaagccggacatcagccgcgccaaggagctcctcggctgggagcccaag 61
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| ||||||| ||||||| || | ||||||| ||||||||| | || ||||||||
Sbjct: 62 atccccctccacaagggcctcccgctcatggtccaggacttccgcgaccgcatcttcggc 121
Query: 366 gacca 370
|||||
Sbjct: 122 gacca 126
>gb|AU173448.1|AU173448 AU173448 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3167, mRNA sequence
Length = 449
Score = 91.7 bits (46), Expect = 4e-016
Identities = 124/150 (82%)
Strand = Plus / Plus
Query: 221 gttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaa 280
||||||||| |||||| || || |||||||||||||||||||||||| |||| || ||
Sbjct: 1 gttccgtcccaacacccaggacgacccgcacaagcgcaagcctgacatcggccgtgccaa 60
Query: 281 agagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcac 340
|||||||| || |||||||| ||| | || |||| |||| ||||||| |||||||||
Sbjct: 61 ggagctccttgggtgggagccaaagatccctctccacaagggtcttcccctcatggtcac 120
Query: 341 tgacttccgcaaacgtatcttcggggacca 370
||||||||||| || || ||||| |||||
Sbjct: 121 cgacttccgcaagcgcattttcggtgacca 150
>gb|CF303741.1|CF303741 ABF1--03-B12.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-B12, mRNA sequence
Length = 552
Score = 91.7 bits (46), Expect = 4e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct: 463 gttgctcaggctttgaggaaggagcctttgacggtttacggtgatggcaagcagaccagg 522
Query: 66 agctttcaatatgtctcagatttggt 91
|| || ||||||||||| ||| ||||
Sbjct: 523 agtttccaatatgtctctgatctggt 548
>gb|AU173188.1|AU173188 AU173188 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1645, mRNA sequence
Length = 449
Score = 85.7 bits (43), Expect = 3e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 305 ggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcgg 364
||||||||| |||||||||||||||| |||||| || |||||||||||||| ||||| ||
Sbjct: 1 ggttcccctgcgtgagggccttcccctcatggttaccgacttccgcaaacgcatctttgg 60
Query: 365 ggaccaggaag 375
||||||||||
Sbjct: 61 cgaccaggaag 71
>dbj|AK071034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075I12, full
insert sequence
Length = 1604
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 34 tgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagatttggt 91
||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 998 tgacagtttatggtgatggaaagcagactagaagttttcaatatgtttcagatttggt 1055
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0009C19, from chromosome 3, complete sequence
Length = 131709
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 34 tgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagatttggt 91
||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 39187 tgacagtttatggtgatggaaagcagactagaagttttcaatatgtttcagatttggt 39244
>gb|AACV01006352.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006352, whole
genome shotgun sequence
Length = 30443
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 34 tgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagatttggt 91
||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 3908 tgacagtttatggtgatggaaagcagactagaagttttcaatatgtttcagatttggt 3851
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 634,472
Number of Sequences: 438736
Number of extensions: 634472
Number of successful extensions: 2859
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2660
Number of HSP's gapped (non-prelim): 177
length of query: 651
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 630
effective length of database: 2,791,206,460
effective search space: 1758460069800
effective search space used: 1758460069800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)