BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3510875.2.1
(707 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA998180.1|CA998180 S345A_E11 Rice cold stress germinati... 208 3e-051
dbj|AK063148.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 208 3e-051
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 208 3e-051
gb|AC134044.4| Oryza sativa (japonica cultivar-group) chrom... 208 3e-051
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 208 3e-051
gb|AACV01022471.1| Oryza sativa (japonica cultivar-group) c... 194 4e-047
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 194 4e-047
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 194 4e-047
gb|AU075461.1|AU075461 AU075461 Rice cDNA from immature lea... 180 7e-043
dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA... 125 3e-026
gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) c... 125 3e-026
gb|AU070157.1|AU070157 AU070157 Rice cDNA from immature lea... 78 7e-012
gb|AU075460.1|AU075460 AU075460 Rice cDNA from immature lea... 72 4e-010
emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Parti... 56 3e-005
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|AACV01024067.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP004308.3| Oryza sativa (japonica cultivar-group) geno... 46 0.026
dbj|AP004988.3| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|AACV01016797.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
ref|NM_189817.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.026
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.026
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|AQ329011.1|AQ329011 nbxb0044O15r CUGI Rice BAC Library O... 44 0.10
dbj|AK107902.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
gb|AACV01010635.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
ref|XM_474261.1| Oryza sativa (japonica cultivar-group), p... 44 0.10
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromoso... 44 0.10
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|C72987.1|C72987 C72987 Rice panicle at flowering stage O... 42 0.40
gb|CA756126.1|CA756126 BR030035000_PLATE_F01_6_013.ab1 OA O... 42 0.40
gb|CB678652.1|CB678652 OSJNEf01A15.f OSJNEf Oryza sativa (j... 42 0.40
gb|CB678653.1|CB678653 OSJNEf01A15.r OSJNEf Oryza sativa (j... 42 0.40
gb|CV721063.1|CV721063 YBH--02-M02.b1 Rice before heading y... 42 0.40
dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
gb|AC123520.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
dbj|AP006186.3| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 42 0.40
ref|NT_107143.1| Oryza sativa (japonica cultivar-group) 42 0.40
gb|AACV01015027.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01022599.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA 42 0.40
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.40
gb|CH401258.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
>gb|CA998180.1|CA998180 S345A_E11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 665
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 428 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 369
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 368 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 309
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 308 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 249
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 248 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 189
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 188 gcgaacgtgtagctcccctgggcgcgccccacctccg 152
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 131 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 72
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 71 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 12
Query: 684 tacacct 690
|||||||
Sbjct: 11 tacacct 5
>dbj|AK063148.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H04, full
insert sequence
Length = 756
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 564 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 505
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 504 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 445
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 444 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 385
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 384 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 325
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 324 gcgaacgtgtagctcccctgggcgcgccccacctccg 288
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 267 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 208
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 207 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 148
Query: 684 tacacct 690
|||||||
Sbjct: 147 tacacct 141
>ref|NT_107141.1| Oryza sativa (japonica cultivar-group)
Length = 1008063
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 414607 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 414666
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 414667 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 414726
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 414727 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 414786
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 414787 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 414846
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 414847 gcgaacgtgtagctcccctgggcgcgccccacctccg 414883
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 418086 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 418145
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 418146 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 418205
Query: 685 acacct 690
||||||
Sbjct: 418206 acacct 418211
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 417951 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 418010
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 418011 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 418054
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 414904 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 414963
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 414964 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 415023
Query: 684 tacacct 690
|||||||
Sbjct: 415024 tacacct 415030
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 417829 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 417888
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 417889 gccgacgacgctcatctc 417906
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 424278 agcgggtcgtcgatcaccaccaccgcgccgaa 424309
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 3897470 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 3897529
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 3897530 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 3897589
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 3897590 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 3897649
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3897650 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 3897709
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 3897710 gcgaacgtgtagctcccctgggcgcgccccacctccg 3897746
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 3900949 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3901008
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 3901009 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3901068
Query: 685 acacct 690
||||||
Sbjct: 3901069 acacct 3901074
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 3900814 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3900873
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 3900874 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3900917
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 3897767 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3897826
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 3897827 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3897886
Query: 684 tacacct 690
|||||||
Sbjct: 3897887 tacacct 3897893
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 3900692 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 3900751
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 3900752 gccgacgacgctcatctc 3900769
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 3907141 agcgggtcgtcgatcaccaccaccgcgccgaa 3907172
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 5919009 cgtcagcgggtcgtcgatggc 5918989
>gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0019D06 map S10616A, complete sequence
Length = 182486
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 25096 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 25155
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 25156 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 25215
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 25216 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 25275
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 25276 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 25335
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 25336 gcgaacgtgtagctcccctgggcgcgccccacctccg 25372
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 28575 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 28634
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 28635 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 28694
Query: 685 acacct 690
||||||
Sbjct: 28695 acacct 28700
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 28440 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 28499
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 28500 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 28543
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 25393 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 25452
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 25453 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 25512
Query: 684 tacacct 690
|||||||
Sbjct: 25513 tacacct 25519
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 28318 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 28377
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 28378 gccgacgacgctcatctc 28395
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 34767 agcgggtcgtcgatcaccaccaccgcgccgaa 34798
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 208 bits (105), Expect = 3e-051
Identities = 234/277 (84%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 3906164 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 3906223
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 3906224 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 3906283
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 3906284 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 3906343
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3906344 tggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcg 3906403
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 3906404 gcgaacgtgtagctcccctgggcgcgccccacctccg 3906440
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 3909643 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3909702
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 3909703 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3909762
Query: 685 acacct 690
||||||
Sbjct: 3909763 acacct 3909768
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 3909508 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3909567
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 3909568 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3909611
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 3906461 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3906520
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 3906521 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3906580
Query: 684 tacacct 690
|||||||
Sbjct: 3906581 tacacct 3906587
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 3909386 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 3909445
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 3909446 gccgacgacgctcatctc 3909463
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 3915835 agcgggtcgtcgatcaccaccaccgcgccgaa 3915866
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 5985486 cgtcagcgggtcgtcgatggc 5985466
>gb|AACV01022471.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022471,
whole genome shotgun sequence
Length = 1146
Score = 194 bits (98), Expect = 4e-047
Identities = 234/278 (84%), Gaps = 1/278 (0%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 539 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 480
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 479 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 420
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccg-tt 442
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || ||
Sbjct: 419 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccctt 360
Query: 443 gtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtc 502
||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 359 gtggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtc 300
Query: 503 cgcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 299 ggcgaacgtgtagctcccctgggcgcgccccacctccg 262
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 241 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 182
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 181 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 122
Query: 684 tacacct 690
|||||||
Sbjct: 121 tacacct 115
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 194 bits (98), Expect = 4e-047
Identities = 234/278 (84%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 3753919 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 3753978
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 3753979 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 3754038
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccg-tt 442
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || ||
Sbjct: 3754039 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccctt 3754098
Query: 443 gtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtc 502
||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3754099 gtggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtc 3754158
Query: 503 cgcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 3754159 ggcgaacgtgtagctcccctgggcgcgccccacctccg 3754196
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 3706070 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3706129
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 3706130 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3706189
Query: 685 acacct 690
||||||
Sbjct: 3706190 acacct 3706195
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 3705935 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3705994
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 3705995 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3706038
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 3754217 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3754276
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 3754277 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3754336
Query: 684 tacacct 690
|||||||
Sbjct: 3754337 tacacct 3754343
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 3705813 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 3705872
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 3705873 gccgacgacgctcatctc 3705890
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 3712262 agcgggtcgtcgatcaccaccaccgcgccgaa 3712293
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 194 bits (98), Expect = 4e-047
Identities = 234/278 (84%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 4056211 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 4056270
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 4056271 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 4056330
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccg-tt 442
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || ||
Sbjct: 4056331 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccctt 4056390
Query: 443 gtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtc 502
||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 4056391 gtggtcgccggcggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtc 4056450
Query: 503 cgcgaacgtgtaggtgccctgggcgcggcccacctccg 540
|||||||||||| | ||||||||||| ||||||||||
Sbjct: 4056451 ggcgaacgtgtagctcccctgggcgcgccccacctccg 4056488
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 4008362 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 4008421
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 4008422 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 4008481
Query: 685 acacct 690
||||||
Sbjct: 4008482 acacct 4008487
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 4008227 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 4008286
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 4008287 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 4008330
Score = 87.7 bits (44), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 4056509 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 4056568
Query: 624 gacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaag 683
||||||| |||||| | | | ||||||||| |||||||| |||| ||||||||||||
Sbjct: 4056569 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 4056628
Query: 684 tacacct 690
|||||||
Sbjct: 4056629 tacacct 4056635
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 4008105 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 4008164
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 4008165 gccgacgacgctcatctc 4008182
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 4014554 agcgggtcgtcgatcaccaccaccgcgccgaa 4014585
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 5729599 cgtcagcgggtcgtcgatggc 5729579
>gb|AU075461.1|AU075461 AU075461 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60741_2Z, mRNA sequence
Length = 391
Score = 180 bits (91), Expect = 7e-043
Identities = 227/271 (83%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||| |
Sbjct: 270 gccttgacgaagacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacg 211
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| | |||| ||||| || | ||||||||||||||||||| ||||||||||||||||
Sbjct: 210 gtgcgggcctcgacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctc 151
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||| ||||| | ||||| ||| ||||| || |||
Sbjct: 150 atctccctcaccgccgagagcacctcgttccggccgacgatggcgagggtgctccccttg 91
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
|| |||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct: 90 tggtcgccggcggtgaacacgaa-ttcatgttcatgaggaggccgaacgtcttctggtcg 32
Query: 504 gcgaacgtgtaggtgccctgggcgcggccca 534
|||||||||||| | ||||||||||| ||||
Sbjct: 31 gcgaacgtgtagctcccctgggcgcgcccca 1
>dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F01, full
insert sequence
Length = 712
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Minus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 276 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 217
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 216 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 157
Query: 685 acacct 690
||||||
Sbjct: 156 acacct 151
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 411 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 352
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 351 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 308
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 533 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 474
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 473 gccgacgacgctcatctc 456
>gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022467, whole
genome shotgun sequence
Length = 40248
Score = 125 bits (63), Expect = 3e-026
Identities = 110/126 (87%)
Strand = Plus / Minus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |
Sbjct: 20047 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 19988
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | || | |||||||||||||| ||||||||| |||||||| |||
Sbjct: 19987 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 19928
Query: 685 acacct 690
||||||
Sbjct: 19927 acacct 19922
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 433 tgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacg 492
||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct: 20182 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 20123
Query: 493 tctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacc 536
| |||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 20122 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 20079
Score = 67.9 bits (34), Expect = 7e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 311 gccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgcc 370
||||||||||| |||| | |||| ||||||| | ||||||||||||||||||| |||
Sbjct: 20304 gccggagtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagcc 20245
Query: 371 gccgacgatgctcatctc 388
|||||||| |||||||||
Sbjct: 20244 gccgacgacgctcatctc 20227
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaa 601
|||||||||||||| ||||||||||||||||
Sbjct: 13855 agcgggtcgtcgatcaccaccaccgcgccgaa 13824
>gb|AU070157.1|AU070157 AU070157 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61516_1A, mRNA sequence
Length = 448
Score = 77.8 bits (39), Expect = 7e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 475 ccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggccca 534
|||||||||| |||||||||| ||| || |||||||||||| | ||||||||||| ||||
Sbjct: 435 ccatgaggagnccgaacgtcttctgctcggcgaacgtgtagctcccctgggcgcgcccca 376
Query: 535 cctccg 540
||||||
Sbjct: 375 cctccg 370
Score = 73.8 bits (37), Expect = 1e-010
Identities = 103/126 (81%)
Strand = Plus / Minus
Query: 565 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagg 624
|||||||||||||||||||||||||||| ||||||||| |||||| || ||| | |
Sbjct: 348 tcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtcg 289
Query: 625 acgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagt 684
|||||| |||||| | | | ||||||||| ||| |||| |||| || ||||||||||
Sbjct: 288 acgccgcctgcgccaccctgatcgccgtcggcttcntcccgcccaccacntcgtggaagt 229
Query: 685 acacct 690
||||||
Sbjct: 228 acacct 223
>gb|AU075460.1|AU075460 AU075460 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60741_1A, mRNA sequence
Length = 424
Score = 71.9 bits (36), Expect = 4e-010
Identities = 105/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 564 gtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggag 623
||||||||||| ||||||||||||||||| ||||||||| |||||| || ||| |
Sbjct: 361 gtcgtcagcggntcgtcgatggccaccacngcgccgaagaaggtggaggagccgttcgtc 302
Query: 624 gacgccgnctgcgcgatgc-gcaccgccgtcgggttcgtccccgccacgacgtcgtggaa 682
||||||| |||||| | | | ||||||||| |||||||| |||| |||||||||||
Sbjct: 301 gacgccgcctgcgccaccctgantcgccgtcggcttcgtcccgcccaccacgtcgtggaa 242
Query: 683 gtacacct 690
||||||||
Sbjct: 241 gtacacct 234
>emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0010K22
of library OSJNBa from chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 92728
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 50672 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 50731
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 50732 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 50783
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 50871 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 50912
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 50822 gtaggtgccctgggcgcggcccacc 50846
>ref|NT_107157.1| Oryza sativa (japonica cultivar-group)
Length = 959526
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 144122 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 144063
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 144062 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 144011
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 143923 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 143882
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 143972 gtaggtgccctgggcgcggcccacc 143948
>gb|AACV01024067.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024067, whole
genome shotgun sequence
Length = 28316
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 24253 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 24312
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 24313 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 24364
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 24452 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 24493
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 24403 gtaggtgccctgggcgcggcccacc 24427
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 3658199 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 3658140
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 3658139 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 3658088
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 3658000 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3657959
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 3658049 gtaggtgccctgggcgcggcccacc 3658025
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 3658199 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 3658140
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 3658139 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 3658088
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 3658000 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3657959
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 3658049 gtaggtgccctgggcgcggcccacc 3658025
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 3789373 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 3789314
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 3789313 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 3789262
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 3789174 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3789133
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 3789223 gtaggtgccctgggcgcggcccacc 3789199
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 56.0 bits (28), Expect = 3e-005
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 362 gccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaag 421
|||| |||||||||||| | ||||||||||||| || || |||||||||||||| |
Sbjct: 3789347 gccggtgccgccgacgacggccatctcgcggacggcggcgaagacctcgttgcggcccat 3789288
Query: 422 gatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| || ||||||||||||| | ||||| | ||| ||||||||||||
Sbjct: 3789287 gatggcgacggtgctgccgttgtacctgccggactggaagacgaagttcatg 3789236
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 561 cccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaag 602
|||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 3789148 cccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3789107
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 512 gtaggtgccctgggcgcggcccacc 536
|||||||||||||||||||||||||
Sbjct: 3789197 gtaggtgccctgggcgcggcccacc 3789173
>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0552F09
Length = 134659
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 40085 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 40043
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1056G08
Length = 168173
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 109458 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 109416
>gb|AACV01016797.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016797, whole
genome shotgun sequence
Length = 16873
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 3697 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 3655
>ref|NM_189817.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 570
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 398 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 356
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 13029373 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 13029331
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 10871995 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 10871953
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 24271434 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 24271392
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 396950 gtgctgccgttgttctcgccggcggtgaa 396978
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 46.1 bits (23), Expect = 0.026
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 423 atggagagcgtgctgccgttgtgctcgccggccgtgaacacga 465
||||| |||||||| ||| |||||||||||| ||||||||||
Sbjct: 25416368 atggacagcgtgctcccggcgtgctcgccggcggtgaacacga 25416326
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 404109 gtgctgccgttgttctcgccggcggtgaa 404137
>gb|AQ329011.1|AQ329011 nbxb0044O15r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0044O15r, DNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 379 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 334
>dbj|AK107902.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F09, full
insert sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 463 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 418
>gb|AACV01010635.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010635, whole
genome shotgun sequence
Length = 12919
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 11268 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 11223
>ref|XM_474261.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 555
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 477 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 432
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 1467614 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 1467659
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 11642491 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 11642536
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 30786590 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 30786635
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
complete sequence
Length = 146168
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 123383 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 123428
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
|||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 34072487 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgctc 34072532
>gb|C72987.1|C72987 C72987 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2609_1A, mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 371 gtgctgccgttgttctcgccggcggtgaa 343
>gb|CA756126.1|CA756126 BR030035000_PLATE_F01_6_013.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030035000_PLATE_F01_6_013.ab1 similar to NP_199066.1|
(NM_123616) putative protein [Arabidopsis thaliana]
gi|9759487|dbj|BAB10492.1| (AB016888) contains
similarity to disease resistance response
proteingene_id:MDH9.21 [Arabidopsis thaliana], mRNA
sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 192 gtgctgccgttgttctcgccggcggtgaa 164
>gb|CB678652.1|CB678652 OSJNEf01A15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01A15 5', mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 241 cgtcagcgggtcgtcgatggc 221
>gb|CB678653.1|CB678653 OSJNEf01A15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01A15 3', mRNA sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 515 cgtcagcgggtcgtcgatggc 535
>gb|CV721063.1|CV721063 YBH--02-M02.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--02-M02, mRNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 161 gtgctgccgttgttctcgccggcggtgaa 133
>dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full
insert sequence
Length = 958
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 389 gtgctgccgttgttctcgccggcggtgaa 361
>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full
insert sequence
Length = 885
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 321 cgtcagcgggtcgtcgatggc 301
>dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C06, full
insert sequence
Length = 1001
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 402 gtgctgccgttgttctcgccggcggtgaa 430
>dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A02, full
insert sequence
Length = 957
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 385 gtgctgccgttgttctcgccggcggtgaa 357
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04,
complete sequence
Length = 164882
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 566 cgtcagcgggtcgtcgatggc 586
|||||||||||||||||||||
Sbjct: 128893 cgtcagcgggtcgtcgatggc 128873
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1317D11
Length = 135043
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 128347 gtgctgccgttgttctcgccggcggtgaa 128375
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0585H11
Length = 149371
Score = 42.1 bits (21), Expect = 0.40
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 432 gtgctgccgttgtgctcgccggccgtgaa 460
||||||||||||| ||||||||| |||||
Sbjct: 6273 gtgctgccgttgttctcgccggcggtgaa 6301
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,107,228
Number of Sequences: 438736
Number of extensions: 1107228
Number of successful extensions: 8989
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8415
Number of HSP's gapped (non-prelim): 552
length of query: 707
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 686
effective length of database: 2,791,206,460
effective search space: 1914767631560
effective search space used: 1914767631560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)