BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA... 470 e-130
ref|NM_191984.1| Oryza sativa (japonica cultivar-group), p... 470 e-130
gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing... 438 e-120
gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japo... 377 e-102
gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature lea... 315 2e-083
gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing... 315 2e-083
gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (j... 281 3e-073
gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (jap... 232 2e-058
gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid ... 226 1e-056
gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa... 224 6e-056
gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature lea... 190 8e-046
gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (j... 190 8e-046
gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (j... 188 3e-045
gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid ... 157 1e-035
gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA ... 151 7e-034
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 119 2e-024
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japoni... 105 4e-020
gb|AACV01002583.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01002584.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
ref|NM_191104.1| Oryza sativa (japonica cultivar-group), p... 46 0.030
dbj|AP003446.3| Oryza sativa (japonica cultivar-group) geno... 46 0.030
>dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117D10, full
insert sequence
Length = 893
Score = 470 bits (237), Expect = e-130
Identities = 396/449 (88%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 153 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 212
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 213 ccagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 272
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct: 273 atccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttttta 332
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|||||||||||||| |||||||| || || |||||||| || |||||||| ||||| ||
Sbjct: 333 cctgaggaatatcctatggctgctccaaaggttaggttcctgaccaaaatataccacccc 392
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 393 aacattgacaagcttggtaggatatgccttgacattctcaaggacaaatggagcccagcc 452
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || |||||||| | || || |||||||| || ||||| ||||| || |||
Sbjct: 453 cttcagattcggacagttcttttgagtatccaggcactcctaagtgcaccaaaccctgat 512
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
||||||||||| || |||||||| || ||||||||| | |||||||| |||||| ||||
Sbjct: 513 gatcctctctctgataacattgcaaagcactggaaagccaatgaagcagaagctgttgaa 572
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 573 acagcaaaggagtggactcgcctgtatgc 601
>ref|NM_191984.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 462
Score = 470 bits (237), Expect = e-130
Identities = 396/449 (88%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 1 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 60
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 61 ccagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 120
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct: 121 atccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttttta 180
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|||||||||||||| |||||||| || || |||||||| || |||||||| ||||| ||
Sbjct: 181 cctgaggaatatcctatggctgctccaaaggttaggttcctgaccaaaatataccacccc 240
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 241 aacattgacaagcttggtaggatatgccttgacattctcaaggacaaatggagcccagcc 300
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || |||||||| | || || |||||||| || ||||| ||||| || |||
Sbjct: 301 cttcagattcggacagttcttttgagtatccaggcactcctaagtgcaccaaaccctgat 360
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
||||||||||| || |||||||| || ||||||||| | |||||||| |||||| ||||
Sbjct: 361 gatcctctctctgataacattgcaaagcactggaaagccaatgaagcagaagctgttgaa 420
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 421 acagcaaaggagtggactcgcctgtatgc 449
>gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-L10, mRNA sequence
Length = 699
Score = 438 bits (221), Expect = e-120
Identities = 374/425 (88%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 18 cgaatcatcaaggagacgcagcgactcctcagcgagccagcgccgggaatcagcgcgtct 77
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| |||
Sbjct: 78 ccgtcggaggagaacatgcgctacttcaacgtcatgatccttggcccggcacagtccccc 137
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
||||||||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 138 tatgaaggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgct 197
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || |||||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 198 ccaaaggttaggttcctgaccaaaatataccaccccaacattgacaagcttggtaggata 257
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| |||||||| |||||||||||||| || || |||||||| || |||||||| |
Sbjct: 258 tgccttgacattctcaaggacaaatggagcccagcccttcagattcggacagttcttttg 317
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || |||||||| || ||||| ||||| || |||||||||||||| || ||||||||
Sbjct: 318 agtatccaggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgca 377
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| ||||||||| | |||||||| |||||| |||| ||||| ||||||||||||||||||
Sbjct: 378 aagcactggaaagccaatgaagcagaagctgttgaaacagcaaaggagtggactcgcctg 437
Query: 499 tatgc 503
|||||
Sbjct: 438 tatgc 442
>gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-BI2.1C02 5', mRNA sequence
Length = 521
Score = 377 bits (190), Expect = e-102
Identities = 334/383 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 73 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 132
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 133 ccagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 192
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct: 193 atccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttttta 252
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||| |||||||| || || |||||||| || |||||||| ||||| ||
Sbjct: 253 cccgaggaatatcctatggctgctccaaaggttaggttcctgaccaaaatataccacccc 312
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 313 aacattgacaagcttggtaggatatgccttgacattctcaaggacaaatggagcccagcc 372
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || |||||||| | || || |||||||| || ||||| ||||| || |||
Sbjct: 373 cttcagattcggacagttcttttgagtatccaggcactcctaagtgcaccaaaccctgat 432
Query: 415 gatcctctctcagacaacattgc 437
|||| |||| || ||||||||
Sbjct: 433 gatcnnntctctgataacattgc 455
>gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_1A, mRNA sequence
Length = 394
Score = 315 bits (159), Expect = 2e-083
Identities = 241/269 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 118 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 177
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 178 ccagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 237
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct: 238 atccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttttta 297
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|||||||||||||| |||||||| || || |||||||| || | |||||| ||||| |
Sbjct: 298 cctgaggaatatcctatggctgctccaaaggttaggttcctgancaaaatataccacncc 357
Query: 295 aacattgacaagcttggtaggatatgcct 323
|||||||||||||||||||||||||||||
Sbjct: 358 aacattgacaagcttggtaggatatgcct 386
>gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-G16, mRNA sequence
Length = 587
Score = 315 bits (159), Expect = 2e-083
Identities = 291/335 (86%)
Strand = Plus / Plus
Query: 169 gtcatgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagcta 228
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 6 gtcatgatccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactc 65
Query: 229 ttcttgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttac 288
|| || |||||||||||||| |||||||| || || |||||||| || |||||||| |||
Sbjct: 66 tttttacctgaggaatatcctatggctgctccaaaggttaggttcctgaccaaaatatac 125
Query: 289 catccgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagt 348
|| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 126 caccccaacattgacaagcttggtaggatatgccttgacattctcaaggacaaatggagc 185
Query: 349 cccgctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaat 408
|| || |||||||| || |||||||| | || || |||||||| || ||||| |||||
Sbjct: 186 ccagcccttcagattcggacagttcttttgagtatccaggcactcctaagtgcaccaaac 245
Query: 409 ccagatgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagct 468
|| |||||||||||| | || |||||||| || ||||||||| | |||||||| ||||||
Sbjct: 246 cctgatgatcctctccctgataacattgcaaagcactggaaagccaatgaagcagaagct 305
Query: 469 tttgagacagcgaaggagtggactcgcctgtatgc 503
|||| ||||| |||||||||||||||||||||||
Sbjct: 306 gttgaaacagcaaaggagtggactcgcctgtatgc 340
>gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50402, mRNA sequence
Length = 437
Score = 281 bits (142), Expect = 3e-073
Identities = 234/267 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || |||||||||||||||||||||| ||||| || ||
Sbjct: 134 atggccaacagcaacctcccccggngaatcatcaaggagacgcagcgactcctnagngag 193
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || ||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 194 ccagcgccgggaatnagcgcgtntccgtcggaggagaacatgcgctacttcaacgtcatg 253
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct: 254 atccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttttta 313
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|||||||||||||| |||||||| || || |||||||| || |||||||| ||||| |
Sbjct: 314 cctgaggaatatcctatggctgctccaaaggttaggttcctgaccaaaatataccaccnc 373
Query: 295 aacattgacaagcttggtaggatatgc 321
| ||||||||||||| |||||||||||
Sbjct: 374 ancattgacaagctttgtaggatatgc 400
>gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3571_1A, mRNA sequence
Length = 423
Score = 232 bits (117), Expect = 2e-058
Identities = 178/199 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 142 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 201
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| ||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 202 ccagcnccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 261
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| |||||||| |||||||||||||| ||||| |||||||| || || ||
Sbjct: 262 atccttggcccggcacagtccccctatgaaggtggngtttttaagcttgaactcttttta 321
Query: 235 cctgaggaatatccaatgg 253
||||||||||||| ||||
Sbjct: 322 actgaggaatatcctatgg 340
>gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 535
Score = 226 bits (114), Expect = 1e-056
Identities = 219/254 (86%)
Strand = Plus / Plus
Query: 250 atggctgccccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagctt 309
|||||||| || || |||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 1 atggctgctccaaaggttaggttcctgaccaaaatataccaccccaacattgacaagctt 60
Query: 310 ggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtaca 369
|||||||||||||| |||||||| |||||||||||||| || || |||||||| || |||
Sbjct: 61 ggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattcggaca 120
Query: 370 gttctgctcagcattcaggcacttctgagtgccccaaatccagatgatcctctctcagac 429
||||| | || || |||||||| || ||||| ||||| || |||||||||||||| ||
Sbjct: 121 gttcttttgagtatccaggcactcctaagtgcaccaaaccctgatgatcctctctctgat 180
Query: 430 aacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtgg 489
|||||||| || ||||||||| | |||||||| |||||| |||| ||||| |||||||||
Sbjct: 181 aacattgcaaagcactggaaagccaatgaagcagaagctgttgaaacagcaaaggagtgg 240
Query: 490 actcgcctgtatgc 503
||||||||||||||
Sbjct: 241 actcgcctgtatgc 254
>gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 412
Score = 224 bits (113), Expect = 6e-056
Identities = 180/202 (89%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 114 atggccaacagcaacctcccccggcgaatcatcaaggagacgcagcgactcctcagcgag 173
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || ||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 174 ccagcgccgggaatcagcgcgtntccgtcggaggagaacatgcgctacttcaacgtcatg 233
Query: 175 atccttggccccgcacagtcacccta-tgaaggtggagttttcaagcttgagctattctt 233
||||||||||| |||||||| |||| ||||||||||||||| ||| |||| || || ||
Sbjct: 234 atccttggcccggcacagtccncctattgaaggtggagtttttaagnttgaactcttttt 293
Query: 234 gcctgaggaatatccaatggct 255
|||||||||||||| ||||||
Sbjct: 294 acctgaggaatatcctatggct 315
>gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_2Z, mRNA sequence
Length = 692
Score = 190 bits (96), Expect = 8e-046
Identities = 269/329 (81%), Gaps = 2/329 (0%)
Strand = Plus / Plus
Query: 177 ccttggccccgcacagtcaccctatg-aaggtggagttttc-aagcttgagctattcttg 234
||||||||| |||||| | ||||| | |||||||| |||| |||| ||| || || ||
Sbjct: 94 ccttggcccggcacagnccccctanggaaggtgganttttttaagcntgaactctttttn 153
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|||||||||| ||| ||||||| || || |||||||| | |||||||| ||||| ||
Sbjct: 154 cctgaggaatttcctatggctgntccaaaggttaggttcntgaccaaaatntaccacccc 213
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
| ||| ||||||||||| |||||||||| |||||||| |||| ||||||||| || ||
Sbjct: 214 tanattnacaagcttggtnggatatgccttgacattctcaaggtcaaatggagcccagcc 273
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
||| |||| || |||||||| | | || |||||| | || ||||| ||||| || |||
Sbjct: 274 cttnagattcggacagttcttttgngtatccaggcantcctnagtgcaccaaaccctgat 333
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
||||||||||| || |||||||| || ||||||||| | |||||||| |||||| ||||
Sbjct: 334 gatcctctctctgataacattgcaaagcactggaaagccaatgaagcagaagctgttgaa 393
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 394 acagcaaaggagtggactcgcctgtatgc 422
>gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 5', mRNA sequence
Length = 687
Score = 190 bits (96), Expect = 8e-046
Identities = 186/212 (87%), Gaps = 3/212 (1%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccg-aatcatcaaggagacgcagcggctcctcag-cg 112
||||||| |||||||||||| || | ||||||||||||||||||||| |||||||| ||
Sbjct: 136 atggccagcagcaacctcccccggtggaatcatcaaggagacgcagcgactcctcaggcg 195
Query: 113 aaccagcgccggggattagcg-cgtcgccgtcggaagagaacatgcggtacttcaatgtc 171
| ||||||||||| || |||| |||| ||| |||| ||||||||||| |||||| | |||
Sbjct: 196 agccagcgccgggaatcagcgacgtctccgacggaggagaacatgcgctacttcgacgtc 255
Query: 172 atgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattc 231
|||||||||||||| |||||||| |||||||||||||||||||| |||||||| || ||
Sbjct: 256 atgatccttggcccggcacagtccccctatgaaggtggagtttttaagcttgaactcttt 315
Query: 232 ttgcctgaggaatatccaatggctgccccgaa 263
|| |||||||||||||| |||||||| |||||
Sbjct: 316 ttacctgaggaatatcctatggctgctccgaa 347
>gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 3', mRNA sequence
Length = 724
Score = 188 bits (95), Expect = 3e-045
Identities = 203/239 (84%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctc 324
|||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 499 gttaggttcctgaccaaaatataccaccccaacattgacaagcttggtaggatatgcctt 440
Query: 325 gacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcatt 384
|||||||| |||||||||||||| || || |||||||| || ||||||| | || ||
Sbjct: 439 gacattctcaaggacaaatggagcccagcccttcagattcggtcagttcttttgagtatc 380
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || ||||||||||| | || |||||||| || |||
Sbjct: 379 caggcactcctaagtgcaccaaaccctgatgatcctctttttgataacattgcaaagcac 320
Query: 445 tggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgc 503
|||||| | |||||||| |||| | |||| ||||| |||||||||||||||||||||||
Sbjct: 319 tggaaagccaatgaagcagaagttgttgaaacagcaaaggagtggactcgcctgtatgc 261
>gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 557
Score = 157 bits (79), Expect = 1e-035
Identities = 173/203 (85%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 302 acaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcaga 361
|||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||
Sbjct: 483 acaagcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcaga 424
Query: 362 tacgtacagttctgctcagcattcaggcacttctgagtgc-cccaaatccagatgatcct 420
| || |||||||| | || || |||||||| || ||||| || ||| || || ||||||
Sbjct: 423 ttcggacagttcttttgagtatccaggcactcctaagtgcaccaaaaccctgaagatcct 364
Query: 421 ctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacagcg 480
|||| || |||||||| || ||||||||| | |||||||| |||||| |||| |||||
Sbjct: 363 ctctttgataacattgcaaagcactggaaagccaatgaagcagaagctgttgaaacagca 304
Query: 481 aaggagtggactcgcctgtatgc 503
|||||||||||||||||||||||
Sbjct: 303 aaggagtggactcgcctgtatgc 281
>gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030014000_PLATE_A04_25_023.ab1 similar to
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)] gi|21644620|dbj|BAC01179.1| (AP003264)
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 255
Score = 151 bits (76), Expect = 7e-034
Identities = 109/120 (90%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
|||||||||||||||||||| || |||||||||| |||||||||||| |||||||||||
Sbjct: 136 atggccaacagcaacctcccccggcgaatcatcagggagacgcagcgactcctcagcgag 195
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 196 ccagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatg 255
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 20494 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 20435
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 20434 tccttggcccggcacagtccccctatgaaggt 20403
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 18787 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 18728
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 18727 ggacagttct 18718
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 18449 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 18390
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 18389 tggaaagccaatgaagcagaagctgttgaaacag 18356
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 19756 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 19703
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 20823 atggccaacagcaacctcccccggcgaatcatcaagg 20787
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 18267 cagcaaaggagtggactcgcctgtatgc 18240
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 18906 gttaggttcctgaccaaaatataccaccccaacattgacaag 18865
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 27745059 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 27745000
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 27744999 tccttggcccggcacagtccccctatgaaggt 27744968
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 27743352 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 27743293
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 27743292 ggacagttct 27743283
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 27743014 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 27742955
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 27742954 tggaaagccaatgaagcagaagctgttgaaacag 27742921
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 27744321 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 27744268
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 27745388 atggccaacagcaacctcccccggcgaatcatcaagg 27745352
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 27742832 cagcaaaggagtggactcgcctgtatgc 27742805
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 34992746 atatgcctcgacattcttaagga 34992768
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aggagacgcagcggctcctcagcgaaccag 118
||||||||||||| ||||||||||| ||||
Sbjct: 27745200 aggagacgcagcgactcctcagcgagccag 27745171
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 27743471 gttaggttcctgaccaaaatataccaccccaacattgacaag 27743430
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 2192442 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 2192383
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 2192382 tccttggcccggcacagtccccctatgaaggt 2192351
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 2190735 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 2190676
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 2190675 ggacagttct 2190666
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 2190397 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 2190338
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 2190337 tggaaagccaatgaagcagaagctgttgaaacag 2190304
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 2191704 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 2191651
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 2192771 atggccaacagcaacctcccccggcgaatcatcaagg 2192735
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 2190215 cagcaaaggagtggactcgcctgtatgc 2190188
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 9440129 atatgcctcgacattcttaagga 9440151
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aggagacgcagcggctcctcagcgaaccag 118
||||||||||||| ||||||||||| ||||
Sbjct: 2192583 aggagacgcagcgactcctcagcgagccag 2192554
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 2190854 gttaggttcctgaccaaaatataccaccccaacattgacaag 2190813
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 131683 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 131624
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 131623 tccttggcccggcacagtccccctatgaaggt 131592
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 129976 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 129917
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 129916 ggacagttct 129907
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 129638 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 129579
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 129578 tggaaagccaatgaagcagaagctgttgaaacag 129545
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 130945 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 130892
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 132012 atggccaacagcaacctcccccggcgaatcatcaagg 131976
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 129456 cagcaaaggagtggactcgcctgtatgc 129429
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aggagacgcagcggctcctcagcgaaccag 118
||||||||||||| ||||||||||| ||||
Sbjct: 131824 aggagacgcagcgactcctcagcgagccag 131795
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 130095 gttaggttcctgaccaaaatataccaccccaacattgacaag 130054
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 72955 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 72896
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 72895 tccttggcccggcacagtccccctatgaaggt 72864
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 71248 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 71189
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 71188 ggacagttct 71179
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 70910 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 70851
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 70850 tggaaagccaatgaagcagaagctgttgaaacag 70817
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 72217 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 72164
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 73284 atggccaacagcaacctcccccggcgaatcatcaagg 73248
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 70728 cagcaaaggagtggactcgcctgtatgc 70701
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aggagacgcagcggctcctcagcgaaccag 118
||||||||||||| ||||||||||| ||||
Sbjct: 73096 aggagacgcagcgactcctcagcgagccag 73067
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 71367 gttaggttcctgaccaaaatataccaccccaacattgacaag 71326
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 2132286 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 2132227
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 2132226 tccttggcccggcacagtccccctatgaaggt 2132195
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 2130579 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 2130520
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 2130519 ggacagttct 2130510
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 2130241 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 2130182
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 2130181 tggaaagccaatgaagcagaagctgttgaaacag 2130148
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 2131548 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 2131495
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 2132615 atggccaacagcaacctcccccggcgaatcatcaagg 2132579
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 2130059 cagcaaaggagtggactcgcctgtatgc 2130032
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 9257912 atatgcctcgacattcttaagga 9257934
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 9241481 atatgcctcgacattcttaagga 9241503
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 2130698 gttaggttcctgaccaaaatataccaccccaacattgacaag 2130657
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 27334007 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 27333948
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 27333947 tccttggcccggcacagtccccctatgaaggt 27333916
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 27332300 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 27332241
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 27332240 ggacagttct 27332231
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 27331962 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 27331903
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 27331902 tggaaagccaatgaagcagaagctgttgaaacag 27331869
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 27333269 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 27333216
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 27334336 atggccaacagcaacctcccccggcgaatcatcaagg 27334300
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 27331780 cagcaaaggagtggactcgcctgtatgc 27331753
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 34459633 atatgcctcgacattcttaagga 34459655
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 34443202 atatgcctcgacattcttaagga 34443224
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 27332419 gttaggttcctgaccaaaatataccaccccaacattgacaag 27332378
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 116 cagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatga 175
|||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 27664389 cagcgccgggaatcagcgcgtctccgtcggaggagaacatgcgctacttcaacgtcatga 27664330
Query: 176 tccttggccccgcacagtcaccctatgaaggt 207
|||||||||| |||||||| ||||||||||||
Sbjct: 27664329 tccttggcccggcacagtccccctatgaaggt 27664298
Score = 83.8 bits (42), Expect = 1e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
Sbjct: 27662682 agcttggtaggatatgccttgacattctcaaggacaaatggagcccagcccttcagattc 27662623
Query: 365 gtacagttct 374
| ||||||||
Sbjct: 27662622 ggacagttct 27662613
Score = 75.8 bits (38), Expect = 3e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|||||||| || ||||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct: 27662344 caggcactcctaagtgcaccaaaccctgatgatcctctctctgataacattgcaaagcac 27662285
Query: 445 tggaaatcaaatgaagctgaagcttttgagacag 478
|||||| | |||||||| |||||| |||| ||||
Sbjct: 27662284 tggaaagccaatgaagcagaagctgttgaaacag 27662251
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 204 aggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
|||||||||||| |||||||| || || || |||||||||||||| ||||||||
Sbjct: 27663651 aggtggagtttttaagcttgaactctttttacctgaggaatatcctatggctgc 27663598
Score = 58.0 bits (29), Expect = 8e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaagg 91
|||||||||||||||||||| || |||||||||||||
Sbjct: 27664718 atggccaacagcaacctcccccggcgaatcatcaagg 27664682
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgc 503
|||| |||||||||||||||||||||||
Sbjct: 27662162 cagcaaaggagtggactcgcctgtatgc 27662135
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 34912076 atatgcctcgacattcttaagga 34912098
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 89 aggagacgcagcggctcctcagcgaaccag 118
||||||||||||| ||||||||||| ||||
Sbjct: 27664530 aggagacgcagcgactcctcagcgagccag 27664501
Score = 44.1 bits (22), Expect = 0.12
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
|||||||| || |||||||| ||||| || ||||||||||||
Sbjct: 27662801 gttaggttcctgaccaaaatataccaccccaacattgacaag 27662760
>gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2744_1A, mRNA sequence
Length = 351
Score = 105 bits (53), Expect = 4e-020
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 403 ccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagct 462
||||| || |||||||||||||| || |||||||| || ||||||||| | ||||||||
Sbjct: 1 ccaaaccctgatgatcctctctctgataacattgcaaagcactggaaagccaatgaagca 60
Query: 463 gaagcttttgagacagcgaaggagtggactcgcctgtatgc 503
|||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 61 gaagctgttgaaacagcaaaggagtggactcgcctgtatgc 101
>gb|AACV01002583.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002583, whole
genome shotgun sequence
Length = 2794
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 2640 atatgcctcgacattcttaagga 2662
>gb|AACV01002584.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002584, whole
genome shotgun sequence
Length = 20295
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 16227 atatgcctcgacattcttaagga 16249
>ref|NM_191104.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 447
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 250 atatgcctcgacattcttaagga 272
>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1529_G03
Length = 100635
Score = 46.1 bits (23), Expect = 0.030
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 316 atatgcctcgacattcttaagga 338
|||||||||||||||||||||||
Sbjct: 41440 atatgcctcgacattcttaagga 41462
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,024,332
Number of Sequences: 438736
Number of extensions: 1024332
Number of successful extensions: 5566
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5419
Number of HSP's gapped (non-prelim): 142
length of query: 825
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 804
effective length of database: 2,791,206,460
effective search space: 2244129993840
effective search space used: 2244129993840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)