BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3390529.2.1
(407 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU094193.1|AU094193 AU094193 Rice panicle at flowering s... 406 e-111
gb|AU182969.1|AU182969 AU182969 Rice panicle (between 3cm t... 406 e-111
gb|CB656535.1|CB656535 OSJNEc10P22.f OSJNEc Oryza sativa (j... 406 e-111
dbj|AK061390.1| Oryza sativa (japonica cultivar-group) cDNA... 406 e-111
dbj|AK104791.1| Oryza sativa (japonica cultivar-group) cDNA... 406 e-111
ref|XM_470129.1| Oryza sativa (japonica cultivar-group), mRNA 406 e-111
gb|AU164550.1|AU164550 AU164550 Rice root Oryza sativa (jap... 400 e-109
gb|CB679371.1|CB679371 OSJNEf02M17.f OSJNEf Oryza sativa (j... 398 e-109
gb|AU070940.1|AU070940 AU070940 Rice cDNA from young root O... 379 e-103
gb|AU065055.1|AU065055 AU065055 Rice panicle (between 3cm t... 377 e-102
gb|AU181161.1|AU181161 AU181161 Rice panicle (between 3cm t... 369 e-100
gb|AU065056.1|AU065056 AU065056 Rice panicle (between 3cm t... 361 2e-097
gb|CB656536.1|CB656536 OSJNEc10P22.r OSJNEc Oryza sativa (j... 315 1e-083
gb|CB679372.1|CB679372 OSJNEf02M17.r OSJNEf Oryza sativa (j... 315 1e-083
gb|AU070693.1|AU070693 AU070693 Rice cDNA from young root O... 293 4e-077
gb|CA755706.1|CA755706 BR030026001_BR030_E11_85_087.ab1 OA ... 272 1e-070
gb|AU064060.1|AU064060 AU064060 Rice panicle at flowering s... 258 2e-066
gb|AU095592.1|AU095592 AU095592 Rice cDNA from young root O... 220 4e-055
gb|AF474922.1| Oryza sativa chalcone isomerase (Cfi) gene, ... 206 7e-051
gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 gen... 206 7e-051
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 206 7e-051
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 206 7e-051
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 206 7e-051
gb|AACV01008175.1| Oryza sativa (japonica cultivar-group) c... 198 2e-048
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 198 2e-048
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 198 2e-048
gb|D48861.1|D48861 RICS15410A Rice green shoot Oryza sativa... 141 3e-031
gb|AU098353.1|AU098353 AU098353 Rice green shoot Oryza sati... 115 2e-023
gb|AACV01010345.1| Oryza sativa (japonica cultivar-group) c... 46 0.014
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 46 0.014
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.014
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.014
emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromoso... 46 0.014
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.014
gb|CB680322.1|CB680322 OSJNEf04N09.f OSJNEf Oryza sativa (j... 42 0.23
gb|CB685363.1|CB685363 OSJNEf15L05.f OSJNEf Oryza sativa (j... 42 0.23
dbj|AP003831.2| Oryza sativa (japonica cultivar-group) chro... 42 0.23
dbj|AK065595.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.23
dbj|AP005199.3| Oryza sativa (japonica cultivar-group) geno... 42 0.23
gb|AACV01017072.1| Oryza sativa (japonica cultivar-group) c... 42 0.23
ref|XM_479628.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.23
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.23
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.23
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.23
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.23
>gb|AU094193.1|AU094193 AU094193 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3609, mRNA sequence
Length = 407
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 85
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 86 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 145
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 146 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 205
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 206 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 265
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 266 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 325
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 326 cggcgagcagtactcggacaaggtgacggagaactgcgt 364
>gb|AU182969.1|AU182969 AU182969 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40584, mRNA sequence
Length = 426
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 85
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 86 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 145
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 146 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 205
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 206 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 265
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 266 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 325
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 326 cggcgagcagtactcggacaaggtgacggagaactgcgt 364
>gb|CB656535.1|CB656535 OSJNEc10P22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10P22 5', mRNA sequence
Length = 806
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 20 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 79
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 80 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 139
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 140 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 199
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 200 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 259
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 260 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 319
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 320 cggcgagcagtactcggacaaggtgacggagaactgcgt 358
>dbj|AK061390.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C05, full
insert sequence
Length = 877
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 63 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 122
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 123 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 182
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 183 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 242
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 243 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 302
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 303 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 362
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 363 cggcgagcagtactcggacaaggtgacggagaactgcgt 401
>dbj|AK104791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F07, full
insert sequence
Length = 834
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 33 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 92
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 93 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 152
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 153 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 212
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 213 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 272
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 273 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 332
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 333 cggcgagcagtactcggacaaggtgacggagaactgcgt 371
>ref|XM_470129.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 916
Score = 406 bits (205), Expect = e-111
Identities = 306/339 (90%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 148
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 149 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 208
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 209 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 268
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 269 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 328
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 329 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 388
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 389 cggcgagcagtactcggacaaggtgacggagaactgcgt 427
>gb|AU164550.1|AU164550 AU164550 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0451, mRNA sequence
Length = 470
Score = 400 bits (202), Expect = e-109
Identities = 305/339 (89%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 ggccgtgtcgnaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 148
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 149 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 208
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 209 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 268
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 269 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 328
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 329 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 388
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 389 cggcgagcagtactcggacaaggtgacggagaactgcgt 427
>gb|CB679371.1|CB679371 OSJNEf02M17.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M17 5', mRNA sequence
Length = 782
Score = 398 bits (201), Expect = e-109
Identities = 305/339 (89%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 19 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 78
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||| | ||| | || | ||||||| |||||
Sbjct: 79 ctccggccacgcccacttcctcgccggcgcatgtgtgaggggagtggagatcgccggcaa 138
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 139 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 198
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 199 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 258
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 259 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcac 318
Query: 354 gggcgagcagtacgcggagaaagtgacggagaactgcgt 392
|||||||||||| |||| || |||||||||||||||||
Sbjct: 319 cggcgagcagtactcggacaaggtgacggagaactgcgt 357
>gb|AU070940.1|AU070940 AU070940 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10492_1A, mRNA sequence
Length = 433
Score = 379 bits (191), Expect = e-103
Identities = 306/341 (89%), Gaps = 5/341 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 48 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 107
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 108 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 167
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 168 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 227
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 228 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 287
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcct-cccgctga 352
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct: 288 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctggccgctca 347
Query: 353 cgggcgagcagtacgc-ggagaaagtgacggagaactgcgt 392
| |||||||||||| | ||| || |||||||||||||||||
Sbjct: 348 ccggcgagcagtactcgggacaaggtgacggagaactgcgt 388
>gb|AU065055.1|AU065055 AU065055 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41041_2A, mRNA sequence
Length = 393
Score = 377 bits (190), Expect = e-102
Identities = 303/340 (89%), Gaps = 4/340 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 85
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 86 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 145
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 146 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 205
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 206 ggccaagaagtgggccggcaagtccgccgacgagctcgccgncgacgccgccttcttccg 265
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 266 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgntcac 325
Query: 354 gggcgagcagtacgcggagaaa-gtgacggagaactgcgt 392
|||||||||||| ||| ||| ||||||||||||| |||
Sbjct: 326 cggcgagcagtactnggacaaaggtgacggagaactncgt 365
>gb|AU181161.1|AU181161 AU181161 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41042, mRNA sequence
Length = 466
Score = 369 bits (186), Expect = e-100
Identities = 301/336 (89%), Gaps = 5/336 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgt-gtgttcccgccggtggcccgcccgccggg 84
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 85 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 144
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 145 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 204
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 205 ggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccg 264
Query: 294 cgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgac 353
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 265 cgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgttcac 324
Query: 354 gggcgagcagtacgcggagaaa-gtgacggagaact 388
|||||||||||| |||| ||| |||||||||||||
Sbjct: 325 cggcgagcagtactcggacaaaggtgacggagaact 360
>gb|AU065056.1|AU065056 AU065056 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41043_2A, mRNA sequence
Length = 465
Score = 361 bits (182), Expect = 2e-097
Identities = 305/342 (89%), Gaps = 6/342 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 85
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 86 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 145
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 146 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 205
Query: 234 -ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttcc 292
|||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 206 tggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttcc 265
Query: 293 gcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctga 352
||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |
Sbjct: 266 gcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgttna 325
Query: 353 cgggcgagcagtac-gcggagaaa-gtgacggagaactgcgt 392
| |||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 326 ccggcgagcagtacttcggacaaaggtgacggagaactncgt 367
>gb|CB656536.1|CB656536 OSJNEc10P22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10P22 3', mRNA sequence
Length = 789
Score = 315 bits (159), Expect = 1e-083
Identities = 215/233 (92%), Gaps = 3/233 (1%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 766 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 707
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 706 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 647
Query: 280 gccgccttcttccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatg 339
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 646 gccgccttcttccgcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatg 587
Query: 340 atcctcccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgt 392
||||| ||||| || |||||||||||| |||| || |||||||||||||||||
Sbjct: 586 atcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgt 534
>gb|CB679372.1|CB679372 OSJNEf02M17.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M17 3', mRNA sequence
Length = 737
Score = 315 bits (159), Expect = 1e-083
Identities = 215/233 (92%), Gaps = 3/233 (1%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 714 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 655
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 654 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 595
Query: 280 gccgccttcttccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatg 339
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 594 gccgccttcttccgcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatg 535
Query: 340 atcctcccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgt 392
||||| ||||| || |||||||||||| |||| || |||||||||||||||||
Sbjct: 534 atcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgt 482
>gb|AU070693.1|AU070693 AU070693 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10101_1A, mRNA sequence
Length = 448
Score = 293 bits (148), Expect = 4e-077
Identities = 261/297 (87%), Gaps = 5/297 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 62 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 121
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 122 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 181
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct: 182 cttcatcaagttcacggccatcggcgtgtacctgganganggcgcggccgtgccggcgct 241
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgc-cttcttcc 292
|||||| || |||| |||||| | ||||||||||||||| |||||||||| ||||||||
Sbjct: 242 ggccaacaantgggccggcaantccgccgacgagctcgccgccgacgccgcgcttcttcc 301
Query: 293 gcgacgtcgtcacgggcgacttcgagaagttcacg-agggtgacgatgatcctcccg 348
||||||||||||| ||||| ||| ||||||||||| | ||||||||||||||| |||
Sbjct: 302 gcgacgtcgtcaccggcgatttccagaagttcacgcanggtgacgatgatcctnccg 358
>gb|CA755706.1|CA755706 BR030026001_BR030_E11_85_087.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030026001_BR030_E11_85_087.ab1 similar to (AF474922)
chalcone isomerase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)], mRNA sequence
Length = 626
Score = 272 bits (137), Expect = 1e-070
Identities = 220/247 (89%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 67
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
||||| | | | |||||||||| ||||||||| ||| | || | ||||||| |||||
Sbjct: 68 ctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaa 127
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 128 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgct 187
Query: 234 ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccg 293
| |||||||||||| ||||||| | ||||||||||||||| ||||||||| |||||||||
Sbjct: 188 gtccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccggcttcttccg 247
Query: 294 cgacgtc 300
|||||||
Sbjct: 248 cgacgtc 254
>gb|AU064060.1|AU064060 AU064060 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3609_1A, mRNA sequence
Length = 359
Score = 258 bits (130), Expect = 2e-066
Identities = 285/336 (84%), Gaps = 6/336 (1%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |||
Sbjct: 26 ggccgtgtcggaggtggaggtcgacggcgtn-tgttcccgccggtggcccgcccgcnggg 84
Query: 117 ctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggaggcaa 176
|||| | | | |||||||||| ||||||||| | | || | ||||||| |||||
Sbjct: 85 gtccggccacgcccacttcctcgccggcgcaggtntnaggggagtggagatcgccggcaa 144
Query: 177 cttcatcaagttcacggccatcggcgtgtacctggagga---cgcggccgtgcccgcgct 233
||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 145 cttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccntgcg-gcgct 203
Query: 234 -ggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttcc 292
|||||| ||||||| ||||||| | |||||| |||||||| || |||||||||||||||
Sbjct: 204 tggccaanaagtgggccggcaagtccgccgacnagctcgccgccnacgccgccttcttcc 263
Query: 293 gcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctga 352
|| |||||||||| ||| | ||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 264 gcaacgtcgtcaccggcaatttcaagaagttcacgagggtnacgatgatcctnccgctca 323
Query: 353 cgggcgagcagtacgcggagaaagtgacggagaact 388
| ||| |||||||| |||| || ||||||||||||
Sbjct: 324 ccggcnagcagtactcggacaagntgacggagaact 359
>gb|AU095592.1|AU095592 AU095592 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10492, mRNA sequence
Length = 219
Score = 220 bits (111), Expect = 4e-055
Identities = 154/169 (91%)
Strand = Plus / Plus
Query: 224 tgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccg 283
|||| ||||||||||||||||||| ||| ||| | ||||||||||||||| |||||||||
Sbjct: 1 tgccggcgctggccaagaagtgggccggnaagtccgccgacgagctcgccgccgacgccg 60
Query: 284 ccttcttccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcc 343
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 61 ccttcttccgcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcc 120
Query: 344 tcccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgt 392
| ||||| || ||||||| |||| |||| || |||||||||||||||||
Sbjct: 121 tgccgctcaccggcgagcngtactcggacaaggtgacggagaactgcgt 169
>gb|AF474922.1| Oryza sativa chalcone isomerase (Cfi) gene, complete cds
Length = 2479
Score = 206 bits (104), Expect = 7e-051
Identities = 136/146 (93%), Gaps = 3/146 (2%)
Strand = Plus / Plus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1221 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 1280
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 1281 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 1340
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 1341 gccgccttcttccgcgacgtcgtcac 1366
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 1443 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 1502
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 1503 tcggacaaggtgacggagaactgcgt 1528
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1018 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 1077
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 1078 ctccggccacgcccacttcctcgccggcgcagg 1110
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
sequence
Length = 163828
Score = 206 bits (104), Expect = 7e-051
Identities = 136/146 (93%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 55299 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 55240
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 55239 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 55180
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 55179 gccgccttcttccgcgacgtcgtcac 55154
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 55076 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 55017
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 55016 tcggacaaggtgacggagaactgcgt 54991
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 55502 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 55443
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 55442 ctccggccacgcccacttcctcgccggcgcagg 55410
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 206 bits (104), Expect = 7e-051
Identities = 136/146 (93%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 747894 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 747835
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 747834 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 747775
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 747774 gccgccttcttccgcgacgtcgtcac 747749
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 747671 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 747612
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 747611 tcggacaaggtgacggagaactgcgt 747586
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 748097 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 748038
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 748037 ctccggccacgcccacttcctcgccggcgcagg 748005
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 206 bits (104), Expect = 7e-051
Identities = 136/146 (93%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 34181959 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 34181900
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 34181899 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 34181840
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 34181839 gccgccttcttccgcgacgtcgtcac 34181814
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 34181736 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 34181677
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 34181676 tcggacaaggtgacggagaactgcgt 34181651
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34182162 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 34182103
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 34182102 ctccggccacgcccacttcctcgccggcgcagg 34182070
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 206 bits (104), Expect = 7e-051
Identities = 136/146 (93%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 34091487 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 34091428
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 34091427 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 34091368
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 34091367 gccgccttcttccgcgacgtcgtcac 34091342
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 34091264 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 34091205
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 34091204 tcggacaaggtgacggagaactgcgt 34091179
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34091690 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 34091631
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 34091630 ctccggccacgcccacttcctcgccggcgcagg 34091598
>gb|AACV01008175.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008175,
whole genome shotgun sequence
Length = 5641
Score = 198 bits (100), Expect = 2e-048
Identities = 135/146 (92%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 997 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcc 938
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 937 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 878
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 877 gccgccttcttccgcgacgtcgtcac 852
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1199 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 1140
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 1139 ctccggccacgcccacttcctcgccggcgcagg 1107
Score = 101 bits (51), Expect = 3e-019
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 774 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 715
Query: 367 gcggagaaagtgacggagaactg 389
|||| || ||||||||| ||||
Sbjct: 714 tcggaaaaggtgacggaggactg 692
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 198 bits (100), Expect = 2e-048
Identities = 135/146 (92%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7770716 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcc 7770657
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 7770656 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 7770597
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 7770596 gccgccttcttccgcgacgtcgtcac 7770571
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7770918 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 7770859
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 7770858 ctccggccacgcccacttcctcgccggcgcagg 7770826
Score = 101 bits (51), Expect = 3e-019
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 7770493 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 7770434
Query: 367 gcggagaaagtgacggagaactg 389
|||| || ||||||||| ||||
Sbjct: 7770433 tcggaaaaggtgacggaggactg 7770411
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 198 bits (100), Expect = 2e-048
Identities = 135/146 (92%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35036879 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcc 35036820
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgac 279
|||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||||
Sbjct: 35036819 gccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgac 35036760
Query: 280 gccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||||||||
Sbjct: 35036759 gccgccttcttccgcgacgtcgtcac 35036734
Score = 113 bits (57), Expect = 7e-023
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 57 ggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgccggg 116
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 35037081 ggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccggg 35037022
Query: 117 ctccgccggctcgcacttcctcggcggcgcagg 149
||||| | | | |||||||||| |||||||||
Sbjct: 35037021 ctccggccacgcccacttcctcgccggcgcagg 35036989
Score = 101 bits (51), Expect = 3e-019
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 35036656 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 35036597
Query: 367 gcggagaaagtgacggagaactg 389
|||| || ||||||||| ||||
Sbjct: 35036596 tcggaaaaggtgacggaggactg 35036574
>gb|D48861.1|D48861 RICS15410A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 310
Score = 141 bits (71), Expect = 3e-031
Identities = 102/112 (91%), Gaps = 3/112 (2%)
Strand = Plus / Plus
Query: 163 gagatcggaggcaacttcatcaagttcacggccatcggcgtgtacctggagga---cgcg 219
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 196 gagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcg 255
Query: 220 gccgtgcccgcgctggccaagaagtggggcggcaagacggccgacgagctcg 271
|||||||| ||||||||||||||||||| ||||||| | | |||||||||||
Sbjct: 256 gccgtgccggcgctggccaagaagtgggccggcaagtccgncgacgagctcg 307
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 83 gcgtcgtcttcccgccggtggcccgcccgccgggctccg 121
||||||| |||||||||||||||||||||||||||||||
Sbjct: 19 gcgtcgtgttcccgccggtggcccgcccgccgggctccg 57
>gb|AU098353.1|AU098353 AU098353 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15410, mRNA sequence
Length = 295
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 307 ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 159 ggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtac 218
Query: 367 gcggagaaagtgacggagaactgcgt 392
|||| || |||||||||||||||||
Sbjct: 219 tcggacaaggtgacggagaactgcgt 244
Score = 101 bits (51), Expect = 3e-019
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 236 ccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccgcg 295
||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct: 12 ccaagaagtggnccggcaagtccgccgacgagctcgccgccgacgccgccttcttccgcg 71
Query: 296 acgtcgtcac 305
||||||||||
Sbjct: 72 acgtcgtcac 81
>gb|AACV01010345.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010345, whole
genome shotgun sequence
Length = 38902
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 32683 cgccgccttcttccgcgacgttgtcac 32657
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 2806977 cgccgccttcttccgcgacgttgtcac 2806951
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 6816411 cgccgccttcttccgcgacgttgtcac 6816385
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 25960510 cgccgccttcttccgcgacgttgtcac 25960484
>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04,
complete sequence
Length = 164567
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 96883 cgccgccttcttccgcgacgttgtcac 96857
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 46.1 bits (23), Expect = 0.014
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 cgccgccttcttccgcgacgtcgtcac 305
||||||||||||||||||||| |||||
Sbjct: 29030225 cgccgccttcttccgcgacgttgtcac 29030199
>gb|CB680322.1|CB680322 OSJNEf04N09.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf04N09 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 100 gtggcccgcccgccgggctccgccg 124
|||||||| ||||||||||||||||
Sbjct: 447 gtggcccggccgccgggctccgccg 423
>gb|CB685363.1|CB685363 OSJNEf15L05.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15L05 5', mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 246 ccgacgagctcgcctccgacg 266
>dbj|AP003831.2| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1445_H10,
*** SEQUENCING IN PROGRESS ***
Length = 100886
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 35099 ccgacgagctcgcctccgacg 35119
>dbj|AK065595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026A09, full
insert sequence
Length = 1397
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 342 ccgacgagctcgcctccgacg 362
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0627E10
Length = 163388
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 66574 ccgacgagctcgcctccgacg 66554
>gb|AACV01017072.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017072, whole
genome shotgun sequence
Length = 30702
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 5209 ccgacgagctcgcctccgacg 5229
>ref|XM_479628.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1387
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 333 ccgacgagctcgcctccgacg 353
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 17152907 ccgacgagctcgcctccgacg 17152887
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 15148332 ccgacgagctcgcctccgacg 15148312
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 28547771 ccgacgagctcgcctccgacg 28547751
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 ccgacgagctcgcctccgacg 280
|||||||||||||||||||||
Sbjct: 29539902 ccgacgagctcgcctccgacg 29539882
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 698,435
Number of Sequences: 438736
Number of extensions: 698435
Number of successful extensions: 23291
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22849
Number of HSP's gapped (non-prelim): 394
length of query: 407
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 387
effective length of database: 2,791,645,196
effective search space: 1080366690852
effective search space used: 1080366690852
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)