BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 33531.2.1
(724 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA754044.1|CA754044 BR040008000_PLATE_B08_58_064.ab1 OA ... 82 5e-013
gb|CB682573.1|CB682573 OSJNEf10B04.f OSJNEf Oryza sativa (j... 82 5e-013
gb|CB682574.1|CB682574 OSJNEf10B04.r OSJNEf Oryza sativa (j... 82 5e-013
gb|CF311917.1|CF311917 ABF--07-G09.b1 ABF3-overexpressing t... 82 5e-013
gb|AC103891.2| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|AC135157.2| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|AACV01006154.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
ref|XM_470620.1| Oryza sativa (japonica cultivar-group), p... 82 5e-013
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 82 5e-013
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|DU168358.1|DU168358 UCDRdSpm624A_3.1 UCD RdSpm Rice Inse... 72 5e-010
gb|DU168534.1|DU168534 UCDRdSpm621B_3.1 UCD RdSpm Rice Inse... 72 5e-010
gb|DU168593.1|DU168593 UCDRdSpm619A_3.1 UCD RdSpm Rice Inse... 72 5e-010
gb|DU168750.1|DU168750 UCDRdSpm636A_3.1 UCD RdSpm Rice Inse... 72 5e-010
gb|DU168893.1|DU168893 UCDRdSpm614_3.1 UCD RdSpm Rice Inser... 72 5e-010
gb|DU168908.1|DU168908 UCDRdSpm622_3.1 UCD RdSpm Rice Inser... 72 5e-010
dbj|AK062316.1| Oryza sativa (japonica cultivar-group) cDNA... 72 5e-010
gb|AC136956.4| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
ref|NT_107095.1| Oryza sativa (japonica cultivar-group) chr... 72 5e-010
gb|AC137753.4| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|AACV01023382.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|CF311918.1|CF311918 ABF--07-G09.g1 ABF3-overexpressing t... 68 7e-009
gb|DU168957.1|DU168957 UCDRdSpm627A_3.1 UCD RdSpm Rice Inse... 64 1e-007
gb|AACV01009750.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromoso... 42 0.41
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
>gb|CA754044.1|CA754044 BR040008000_PLATE_B08_58_064.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040008000_PLATE_B08_58_064.ab1 similar to (AC103891)
Putative Phytosulfokines precursor [Oryza sativa, mRNA
sequence
Length = 620
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 295 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 354
Query: 350 cacaactag 358
|||||||||
Sbjct: 355 cacaactag 363
>gb|CB682573.1|CB682573 OSJNEf10B04.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10B04 5', mRNA sequence
Length = 792
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 263 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 322
Query: 350 cacaactag 358
|||||||||
Sbjct: 323 cacaactag 331
>gb|CB682574.1|CB682574 OSJNEf10B04.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10B04 3', mRNA sequence
Length = 408
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 270 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 211
Query: 350 cacaactag 358
|||||||||
Sbjct: 210 cacaactag 202
>gb|CF311917.1|CF311917 ABF--07-G09.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-G09, mRNA sequence
Length = 613
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 334 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 393
Query: 350 cacaactag 358
|||||||||
Sbjct: 394 cacaactag 402
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
complete sequence
Length = 123620
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 93995 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 93936
Query: 350 cacaactag 358
|||||||||
Sbjct: 93935 cacaactag 93927
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
complete sequence
Length = 166072
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 154967 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 155026
Query: 350 cacaactag 358
|||||||||
Sbjct: 155027 cacaactag 155035
>gb|AACV01006154.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006154, whole
genome shotgun sequence
Length = 37778
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 17303 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 17362
Query: 350 cacaactag 358
|||||||||
Sbjct: 17363 cacaactag 17371
>ref|XM_470620.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 306
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 238 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 297
Query: 350 cacaactag 358
|||||||||
Sbjct: 298 cacaactag 306
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 244660 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 244719
Query: 350 cacaactag 358
|||||||||
Sbjct: 244720 cacaactag 244728
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 7001495 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 7001554
Query: 350 cacaactag 358
|||||||||
Sbjct: 7001555 cacaactag 7001563
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 7193857 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 7193916
Query: 350 cacaactag 358
|||||||||
Sbjct: 7193917 cacaactag 7193925
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 6986265 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 6986324
Query: 350 cacaactag 358
|||||||||
Sbjct: 6986325 cacaactag 6986333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaag 349
|||||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct: 6988370 gagtgcctgatgaggaggacactagttgctcacaccgactacatctacacccaagggaat 6988429
Query: 350 cacaactag 358
|||||||||
Sbjct: 6988430 cacaactag 6988438
>gb|DU168358.1|DU168358 UCDRdSpm624A_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm624A_3.1, DNA
sequence
Length = 385
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 251 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 192
Query: 349 gcacaact 356
|||||||
Sbjct: 191 tcacaact 184
>gb|DU168534.1|DU168534 UCDRdSpm621B_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm621B_3.1, DNA
sequence
Length = 379
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 245 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 186
Query: 349 gcacaact 356
|||||||
Sbjct: 185 tcacaact 178
>gb|DU168593.1|DU168593 UCDRdSpm619A_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm619A_3.1, DNA
sequence
Length = 382
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 248 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 189
Query: 349 gcacaact 356
|||||||
Sbjct: 188 tcacaact 181
>gb|DU168750.1|DU168750 UCDRdSpm636A_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm636A_3.1, DNA
sequence
Length = 380
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 246 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 187
Query: 349 gcacaact 356
|||||||
Sbjct: 186 tcacaact 179
>gb|DU168893.1|DU168893 UCDRdSpm614_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm614_3.1, DNA sequence
Length = 392
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 258 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 199
Query: 349 gcacaact 356
|||||||
Sbjct: 198 tcacaact 191
>gb|DU168908.1|DU168908 UCDRdSpm622_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm622_3.1, DNA sequence
Length = 380
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 246 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 187
Query: 349 gcacaact 356
|||||||
Sbjct: 186 tcacaact 179
>dbj|AK062316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C04, full
insert sequence
Length = 737
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 396 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 455
Query: 349 gcacaact 356
|||||||
Sbjct: 456 tcacaact 463
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0038B22, complete sequence
Length = 177557
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 50544 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 50603
Query: 349 gcacaact 356
|||||||
Sbjct: 50604 tcacaact 50611
>ref|NT_107095.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0038B22, complete sequence
Length = 177557
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 50544 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 50603
Query: 349 gcacaact 356
|||||||
Sbjct: 50604 tcacaact 50611
>gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084M23,
complete sequence
Length = 134180
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 113781 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 113840
Query: 349 gcacaact 356
|||||||
Sbjct: 113841 tcacaact 113848
>gb|AACV01023382.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023382,
whole genome shotgun sequence
Length = 5207
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||||||
Sbjct: 659 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccaggggaa 718
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||||||
Sbjct: 2694298 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccaggggaa 2694357
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||||||
Sbjct: 16859280 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccaggggaa 16859339
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 19873551 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 19873610
Query: 349 gcacaact 356
|||||||
Sbjct: 19873611 tcacaact 19873618
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 71.9 bits (36), Expect = 5e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| || | || ||||| |||||||||||||||||||| ||
Sbjct: 20158456 ggagtgcttgatgaggaggacgctggtggcgcacacagactacatctacacccagggaaa 20158515
Query: 349 gcacaact 356
|||||||
Sbjct: 20158516 tcacaact 20158523
>gb|CF311918.1|CF311918 ABF--07-G09.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-G09, mRNA sequence
Length = 532
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccaggggaagcacaactag 358
|||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 514 gctcacaccgactacatctacacccaagggaatcacaactag 473
>gb|DU168957.1|DU168957 UCDRdSpm627A_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm627A_3.1, DNA
sequence
Length = 673
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| |||||||||||||| | | || ||||| |||||||||||||||||||| ||
Sbjct: 246 ggagtgcttgatgaggaggacgcaggtggcgcacacagactacatctacacccagggaaa 187
Query: 349 gcacaact 356
|||||||
Sbjct: 186 tcacaact 179
>gb|AACV01009750.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009750, whole
genome shotgun sequence
Length = 11758
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 263 gacgacgacggagacgacgaacagg 287
||||||||||| |||||||||||||
Sbjct: 2736 gacgacgacggcgacgacgaacagg 2760
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 263 gacgacgacggagacgacgaacagg 287
||||||||||| |||||||||||||
Sbjct: 10712286 gacgacgacggcgacgacgaacagg 10712310
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 263 gacgacgacggagacgacgaacagg 287
||||||||||| |||||||||||||
Sbjct: 18059648 gacgacgacggcgacgacgaacagg 18059672
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
complete sequence
Length = 96079
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 263 gacgacgacggagacgacgaacagg 287
||||||||||| |||||||||||||
Sbjct: 31290 gacgacgacggcgacgacgaacagg 31314
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 263 gacgacgacggagacgacgaacagg 287
||||||||||| |||||||||||||
Sbjct: 20928067 gacgacgacggcgacgacgaacagg 20928091
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,212,036
Number of Sequences: 438736
Number of extensions: 1212036
Number of successful extensions: 9418
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9205
Number of HSP's gapped (non-prelim): 200
length of query: 724
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 703
effective length of database: 2,791,206,460
effective search space: 1962218141380
effective search space used: 1962218141380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)