BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA... 545 e-153
gb|AACV01006898.1| Oryza sativa (japonica cultivar-group) c... 545 e-153
ref|XM_468666.1| Oryza sativa (japonica cultivar-group), mRNA 545 e-153
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 545 e-153
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 545 e-153
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 545 e-153
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 545 e-153
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 545 e-153
gb|AC120529.3| Oryza sativa (japonica cultivar-group) chrom... 545 e-153
gb|AQ446934.2|AQ446934 nbxb0050J04r CUGI Rice BAC Library O... 307 4e-081
dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chro... 62 4e-007
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 62 4e-007
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|CF307754.1|CF307754 ABF--01-E19.g1 ABF3-overexpressing t... 50 0.001
dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 50 0.001
gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hyp... 50 0.001
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 50 0.001
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 46 0.022
dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 46 0.022
ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.022
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.022
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda ph... 44 0.085
dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.085
gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) c... 44 0.085
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 44 0.085
dbj|AP005567.3| Oryza sativa (japonica cultivar-group) geno... 44 0.085
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 44 0.085
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.085
gb|CB000004.1|CB000004 S345V_A05 Rice cold stress germinati... 42 0.34
gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.34
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.34
gb|AACV01006093.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.34
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
>dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048J06, full
insert sequence
Length = 2280
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Plus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1296 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 1355
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1356 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 1415
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 1416 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 1475
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 1476 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 1535
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 1536 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 1595
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 1596 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 1655
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 1656 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 1715
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1716 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 1774
>gb|AACV01006898.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006898, whole
genome shotgun sequence
Length = 46047
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Plus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 7311 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 7370
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 7371 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 7430
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 7431 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 7490
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 7491 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 7550
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 7551 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 7610
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 7611 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 7670
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 7671 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 7730
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 7731 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 7789
>ref|XM_468666.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2282
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Plus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1298 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 1357
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1358 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 1417
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 1418 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 1477
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 1478 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 1537
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 1538 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 1597
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 1598 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 1657
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 1658 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 1717
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1718 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 1776
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 402171 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 402112
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 402111 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 402052
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 402051 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 401992
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 401991 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 401932
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 401931 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 401872
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 401871 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 401812
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 401811 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 401752
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 401751 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 401693
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 3627174 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 3627115
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 3627114 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 3627055
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 3627054 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 3626995
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 3626994 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 3626935
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 3626934 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 3626875
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 3626874 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 3626815
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 3626814 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 3626755
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 3626754 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 3626696
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 17677881 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 17677822
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 17677821 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 17677762
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 17677761 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 17677702
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 17677701 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 17677642
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 17677641 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 17677582
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 17677581 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 17677522
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 17677521 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 17677462
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 17677461 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 17677403
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 6024001 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 6023945
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 16916003 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 16915944
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 16915943 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 16915884
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 16915883 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 16915824
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 16915823 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 16915764
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 16915763 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 16915704
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 16915703 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 16915644
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 16915643 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 16915584
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 16915583 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 16915525
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 5798504 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 5798448
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 16922430 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 16922371
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 16922370 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 16922311
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 16922310 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 16922251
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 16922250 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 16922191
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 16922190 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 16922131
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 16922130 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 16922071
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 16922070 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 16922011
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 16922010 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 16921952
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 5799291 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 5799235
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0039N21, complete sequence
Length = 151732
Score = 545 bits (275), Expect = e-153
Identities = 428/479 (89%)
Strand = Plus / Minus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 65434 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaagtatctt 65375
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| || || || | |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 65374 aatttctcccacccaattatcagctccaaaattgatccgcatacttgtgggtgggctttt 65315
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
|| |||||||| |||||||| ||||| |||||||||||||| |||||| || | ||||||
Sbjct: 65314 gggatgaacatctttgacttaatagcctggaggaaggcaaatgccacagcactttatcat 65255
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgcaggc 249
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 65254 tattggcaagagcaaaatgctgatctattgctctggaggacagggacacttcctgcaggc 65195
Query: 250 cttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctc 309
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 65194 cttttgacgttctatggcctgatggaacccctagatcgcagatggcatgtcttggggcta 65135
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 65134 ggatatgatgttgacatagatgatcgtttgattgagagtgccgctgtcgtgcactacaat 65075
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| || |||||||| ||||||||| | || ||||| || ||||||||||||||||| |||
Sbjct: 65074 gggaatatgaaaccatggctgaagttagccattcgtcggtacaagtatatatgggagcgg 65015
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||| ||| || ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 65014 tatgtcaatttcacacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 64956
>gb|AQ446934.2|AQ446934 nbxb0050J04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0050J04r, DNA sequence
Length = 760
Score = 307 bits (155), Expect = 4e-081
Identities = 301/346 (86%), Gaps = 3/346 (0%)
Strand = Plus / Minus
Query: 146 acttgatagcttggaggaaggcaaac-gccacatcattgtatca-ttattggcaagagca 203
|||| ||||| |||||||||||||| |||||| || | ||||| |||||||||||||||
Sbjct: 751 acttaatagcctggaggaaggcaaaatgccacagcactttatcaattattggcaagagca 692
Query: 204 aaatt-ctgacctattgctctggagaacaggaactcttcctgcaggccttttgacatttt 262
||| | |||| ||||||||||| ||| ||| || |||||||||| ||||||||| || |
Sbjct: 691 aaaatgctgatctattgctctgaagacaagggacacttcctgcagcccttttgacgttct 632
Query: 263 atggcctgatggagcccctagaccgcagatggcatgtcttgggtctcgggtatgatgtag 322
||||||||||| | ||| |||| |||||||||||||||||||| || || |||||||| |
Sbjct: 631 atggcctgatgaaacccntagatcgcagatggcatgtcttggggctaggatatgatgttg 572
Query: 323 acatagatgatcgtctgattgagagtgctgctgttgtgcactataatggaaacatgaaac 382
|||||||||||||| ||||||||||||| ||||| |||||||| ||||| || |||||||
Sbjct: 571 acatagatgatcgtttgattgagagtgccgctgtcgtgcactacaatgggaatatgaaac 512
Query: 383 cctggctgaagctggctattcgccgttacaagtatatatgggaacggtatgtgaatatct 442
| ||||||||| | || ||||| || ||||||||||||||||| |||||||| ||| ||
Sbjct: 511 catggctgaagttagccattcgtcggtacaagtatatatgggagcggtatgtcaatttca 452
Query: 443 cacacccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 cacacccatatgttagagagtgtttgttgcattagaaagtctgcaa 406
>dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1165_E01,
*** SEQUENCING IN PROGRESS ***
Length = 101546
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 54484 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 54530
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 70615 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 70569
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 70615 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 70569
>gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014968, whole
genome shotgun sequence
Length = 17272
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 5827 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 5781
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 11765206 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 11765160
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 29463943 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 29463897
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct: 30433254 ttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgac 30433208
>gb|CF307754.1|CF307754 ABF--01-E19.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-E19, mRNA sequence
Length = 582
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 460 gagtgtatgttgcattagaaagtctgcaa 488
|||||| ||||||||||||||||||||||
Sbjct: 582 gagtgtttgttgcattagaaagtctgcaa 554
>dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A03, full
insert sequence
Length = 1574
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 886 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 930
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
sequence
Length = 179199
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 70211 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 70255
>gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021336, whole
genome shotgun sequence
Length = 24548
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 2719 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 2675
>ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNBa0073L01.13), mRNA
Length = 1836
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 1456 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 1500
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 1372939 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 1372983
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 1559225 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 1559269
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 9949543 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 9949587
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 10739443 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 10739487
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||| | ||||||| ||||||||||| |||||||| ||||||
Sbjct: 10745482 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttgac 10745526
>dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1111_B02,
*** SEQUENCING IN PROGRESS ***
Length = 96360
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 48417 tgtggatgggcttttggaatgaa 48439
>dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056D06, full
insert sequence
Length = 2974
Score = 46.1 bits (23), Expect = 0.022
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 103 gatccacatacttgtggatgggcttttggaatgaacatttttg 145
||||||| | ||||||| ||||||||||| |||||||| ||||
Sbjct: 2356 gatccacgtgcttgtgggtgggcttttgggatgaacatgtttg 2398
>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full
insert sequence
Length = 2371
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 1623 tgtggatgggcttttggaatgaa 1645
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 97307 tgtggatgggcttttggaatgaa 97329
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0670E08
Length = 133106
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 38510 tgtggatgggcttttggaatgaa 38532
>gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018116, whole
genome shotgun sequence
Length = 36630
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 3771 tgtggatgggcttttggaatgaa 3793
>ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2371
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 1623 tgtggatgggcttttggaatgaa 1645
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 14156140 tgtggatgggcttttggaatgaa 14156162
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 5771960 tgtggatgggcttttggaatgaa 5771982
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 13373966 tgtggatgggcttttggaatgaa 13373988
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaa 137
|||||||||||||||||||||||
Sbjct: 14394227 tgtggatgggcttttggaatgaa 14394249
>gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-C22,
mRNA sequence
Length = 500
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 35 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 80
>dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149G11, full
insert sequence
Length = 2482
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 1793 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 1838
>gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020445, whole
genome shotgun sequence
Length = 25627
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 17358 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 17403
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 27785 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 27740
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1254_E07
Length = 124028
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 79774 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 79729
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 455627 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 455582
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 10044413 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 10044368
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 19518224 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 19518179
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.085
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttga 146
|||||||| || | ||||| ||||||| |||||||||||| |||||
Sbjct: 20562127 ttgatccaaatgcatgtggctgggcttatggaatgaacatctttga 20562082
>gb|CB000004.1|CB000004 S345V_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 290 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 346
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0021B21, from chromosome 3, complete sequence
Length = 166777
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 31880 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 31936
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 42.1 bits (21), Expect = 0.34
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaac 171
|||| |||||| | ||| ||||| || ||||||||| ||||||||||||| |||||
Sbjct: 28121 tgtgcatgggcatatgggatgaatatatttgacttggcagcttggaggaagacaaac 28065
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 838,283
Number of Sequences: 438736
Number of extensions: 838283
Number of successful extensions: 19464
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18589
Number of HSP's gapped (non-prelim): 873
length of query: 600
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 579
effective length of database: 2,791,206,460
effective search space: 1616108540340
effective search space used: 1616108540340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)