BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070631.1| Oryza sativa (japonica cultivar-group) cDNA... 708 0.0
ref|NM_195951.1| Oryza sativa (japonica cultivar-group) put... 708 0.0
gb|AC092749.1| Genomic sequence for Oryza sativa (japonica ... 416 e-113
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 416 e-113
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 416 e-113
gb|AC112514.1| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
gb|AACV01021314.1| Oryza sativa (japonica cultivar-group) c... 335 5e-089
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 335 5e-089
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 335 5e-089
gb|AU101159.1|AU101159 AU101159 Rice panicle at flowering s... 252 6e-064
gb|C72685.1|C72685 C72685 Rice panicle at flowering stage O... 226 3e-056
gb|AACV01021313.1| Oryza sativa (japonica cultivar-group) c... 210 2e-051
gb|CG408712.1|CG408712 Ds405 Ds insertion lines Oryza sativ... 174 1e-040
gb|CG408978.1|CG408978 Ds672 Ds insertion lines Oryza sativ... 174 1e-040
gb|AACV01021312.1| Oryza sativa (japonica cultivar-group) c... 137 2e-029
ref|NM_195950.1| Oryza sativa (japonica cultivar-group) put... 137 2e-029
gb|AC104429.2| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nippo... 111 1e-021
gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbar... 111 1e-021
gb|AACV01006065.1| Oryza sativa (japonica cultivar-group) c... 111 1e-021
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 111 1e-021
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 111 1e-021
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
dbj|AK105496.1| Oryza sativa (japonica cultivar-group) cDNA... 107 2e-020
dbj|AK121289.1| Oryza sativa (japonica cultivar-group) cDNA... 101 1e-018
gb|C71791.1|C71791 C71791 Rice panicle at flowering stage O... 96 8e-017
gb|C98508.1|C98508 C98508 Rice panicle at flowering stage O... 96 8e-017
gb|AZ125454.1|AZ125454 OSJNBb0092J15f CUGI Rice BAC Library... 68 2e-008
dbj|AK059149.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.067
gb|AC134239.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.067
gb|AACV01006196.1| Oryza sativa (japonica cultivar-group) c... 46 0.067
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 46 0.067
>dbj|AK070631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A20, full
insert sequence
Length = 1981
Score = 708 bits (357), Expect = 0.0
Identities = 759/893 (84%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 724 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 783
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 784 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 843
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 844 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 903
Query: 624 tgatgaacctgatgcgcaagtacaagatcaaggtgcgcgggcacaacgtgttctgggacg 683
|| | || || | |||||||| |||||| | | || |||||||| ||||||||||
Sbjct: 904 tgctcaagctcgcccaaaagtacaacatcaagattaggggacacaacgtattctgggacg 963
Query: 684 accagaactcgcagatgcagtgggtgaagcccctcaaccttgcgcagctcaaggcagcca 743
||||||||||||||||| ||||||||| ||| || ||||| | ||||| ||||| || |
Sbjct: 964 accagaactcgcagatgaagtgggtgacgccgctgaacctggaccagctgaaggcggcga 1023
Query: 744 tgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatccactgggacg 803
||||||||||||||||||| || ||| | | |||||||| ||||| |||||||||||||
Sbjct: 1024 tgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggacg 1083
Query: 804 tggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcgg 863
||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||
Sbjct: 1084 tggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcgc 1143
Query: 864 cacagatctaccagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaat 923
| ||||||| | |||||||| ||||||| || |||||||| ||||||||||| |
Sbjct: 1144 cgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgagt 1203
Query: 924 tcaacacgctggagcagcccggcgatcccaaccctgtgcccgccaagtacgtggccaaga 983
|||||||||||||||||||||| || |||||||| |||||| ||||||||| |||||||
Sbjct: 1204 tcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtacgtcgccaaga 1263
Query: 984 tgaaccagatccgcggctacgccggcaacggtggcctcaagctcggcgtcggcctcgaga 1043
|||| ||||||| ||||| |||||||| | | ||||||||||||||||||||||||||
Sbjct: 1264 tgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtcggcctcgaga 1323
Query: 1044 gccacttcagcacacccaacatcccgtacatgaggagctcgctggacacgctcgccaagc 1103
|||||||| ||| || |||||||| |||||||||||| | || |||||| | || |||
Sbjct: 1324 gccacttctccaccccaaacatcccttacatgaggagcgccctcgacacgttggcgcagc 1383
Query: 1104 tgaagctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaaccaggtcaagt 1163
| ||||| |||||||||||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct: 1384 tcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaaccaggtgaagt 1443
Query: 1164 acctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgt 1223
| ||||||||||||| |||||||| | ||| ||||| || |||| || | ||||
Sbjct: 1444 tcttggagcaggtgctgagggaagggtacgcgcacccgtcggtgaacgggatgataatgt 1503
Query: 1224 gggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaaga 1283
|||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 1504 gggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttcaaga 1563
Query: 1284 acctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 1564 acctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 1616
Score = 127 bits (64), Expect = 2e-026
Identities = 127/148 (85%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactcttcgggaccc 256
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct: 477 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactcctccggccca 536
Query: 257 gcagagatctactttgagagccacgcaccagttgacatctgggtggacagtgtctcgctg 316
| |||||| ||| |||||| |||| || || ||||||||| ||||||| || ||||||
Sbjct: 537 gggcagatcttcttcgagagcgacgcgccggtggacatctggatggacagcgtgtcgctg 596
Query: 317 cagcccttcaccttcgacgagtgggacg 344
||||| ||||| ||||||||||||||||
Sbjct: 597 cagccgttcacgttcgacgagtgggacg 624
>ref|NM_195951.1| Oryza sativa (japonica cultivar-group) putative 1,4-beta-xylanase
(OSJNBb0023M11.20), mRNA
Length = 1626
Score = 708 bits (357), Expect = 0.0
Identities = 759/893 (84%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 563 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 622
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 623 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 682
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 683 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 742
Query: 624 tgatgaacctgatgcgcaagtacaagatcaaggtgcgcgggcacaacgtgttctgggacg 683
|| | || || | |||||||| |||||| | | || |||||||| ||||||||||
Sbjct: 743 tgctcaagctcgcccaaaagtacaacatcaagattaggggacacaacgtattctgggacg 802
Query: 684 accagaactcgcagatgcagtgggtgaagcccctcaaccttgcgcagctcaaggcagcca 743
||||||||||||||||| ||||||||| ||| || ||||| | ||||| ||||| || |
Sbjct: 803 accagaactcgcagatgaagtgggtgacgccgctgaacctggaccagctgaaggcggcga 862
Query: 744 tgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatccactgggacg 803
||||||||||||||||||| || ||| | | |||||||| ||||| |||||||||||||
Sbjct: 863 tgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggacg 922
Query: 804 tggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcgg 863
||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||
Sbjct: 923 tggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcgc 982
Query: 864 cacagatctaccagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaat 923
| ||||||| | |||||||| ||||||| || |||||||| ||||||||||| |
Sbjct: 983 cgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgagt 1042
Query: 924 tcaacacgctggagcagcccggcgatcccaaccctgtgcccgccaagtacgtggccaaga 983
|||||||||||||||||||||| || |||||||| |||||| ||||||||| |||||||
Sbjct: 1043 tcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtacgtcgccaaga 1102
Query: 984 tgaaccagatccgcggctacgccggcaacggtggcctcaagctcggcgtcggcctcgaga 1043
|||| ||||||| ||||| |||||||| | | ||||||||||||||||||||||||||
Sbjct: 1103 tgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtcggcctcgaga 1162
Query: 1044 gccacttcagcacacccaacatcccgtacatgaggagctcgctggacacgctcgccaagc 1103
|||||||| ||| || |||||||| |||||||||||| | || |||||| | || |||
Sbjct: 1163 gccacttctccaccccaaacatcccttacatgaggagcgccctcgacacgttggcgcagc 1222
Query: 1104 tgaagctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaaccaggtcaagt 1163
| ||||| |||||||||||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct: 1223 tcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaaccaggtgaagt 1282
Query: 1164 acctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgt 1223
| ||||||||||||| |||||||| | ||| ||||| || |||| || | ||||
Sbjct: 1283 tcttggagcaggtgctgagggaagggtacgcgcacccgtcggtgaacgggatgataatgt 1342
Query: 1224 gggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaaga 1283
|||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 1343 gggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttcaaga 1402
Query: 1284 acctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 1403 acctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 1455
Score = 127 bits (64), Expect = 2e-026
Identities = 127/148 (85%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactcttcgggaccc 256
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct: 316 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactcctccggccca 375
Query: 257 gcagagatctactttgagagccacgcaccagttgacatctgggtggacagtgtctcgctg 316
| |||||| ||| |||||| |||| || || ||||||||| ||||||| || ||||||
Sbjct: 376 gggcagatcttcttcgagagcgacgcgccggtggacatctggatggacagcgtgtcgctg 435
Query: 317 cagcccttcaccttcgacgagtgggacg 344
||||| ||||| ||||||||||||||||
Sbjct: 436 cagccgttcacgttcgacgagtgggacg 463
>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
Nipponbare clone OSJNBb0023M11, from chromosome 10,
complete sequence
Length = 138668
Score = 416 bits (210), Expect = e-113
Identities = 423/494 (85%)
Strand = Plus / Plus
Query: 665 cacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaacctt 724
|||||||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 134489 cacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctg 134548
Query: 725 gcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc 784
| ||||| ||||| || |||||||||||||||||||| || ||| | | ||||||||
Sbjct: 134549 gaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccggg 134608
Query: 785 aaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaag 844
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 134609 aaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaag 134668
Query: 845 ctgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcc 904
||||| || | |||||| | ||||||| | |||||||| ||||||| || |||
Sbjct: 134669 ctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcc 134728
Query: 905 atcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgccc 964
||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 134729 atcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgccc 134788
Query: 965 gccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaag 1024
||||||||| ||||||||||| ||||||| ||||| |||||||| | | |||||||
Sbjct: 134789 agcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaag 134848
Query: 1025 ctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcg 1084
||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
Sbjct: 134849 ctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgcc 134908
Query: 1085 ctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaag 1144
|| |||||| | || |||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 134909 ctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaa 134968
Query: 1145 agccccaaccaggt 1158
| |||||||||||
Sbjct: 134969 ggacccaaccaggt 134982
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 133903 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 133962
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 133963 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 134022
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 134023 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 134082
Query: 624 tg 625
||
Sbjct: 134083 tg 134084
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 135378 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 135437
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 135438 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 135494
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 119317 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 119376
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 119377 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 119436
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 119437 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 119496
Query: 625 g 625
|
Sbjct: 119497 g 119497
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 120160 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 120219
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 120220 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 120279
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 120280 atcgccgagtggaggacgcacc 120301
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 119842 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 119901
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 119902 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 119961
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 119962 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 120007
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 119158 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 119210
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 133564 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 133613
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 133732 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 133791
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 133792 acgagtgggacg 133803
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 119527 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 119572
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 119612 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 119671
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 119672 tgggacgtggtgaacgagaacctccact 119699
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 119054 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 119103
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 416 bits (210), Expect = e-113
Identities = 423/494 (85%)
Strand = Plus / Plus
Query: 665 cacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaacctt 724
|||||||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 847752 cacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctg 847811
Query: 725 gcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc 784
| ||||| ||||| || |||||||||||||||||||| || ||| | | ||||||||
Sbjct: 847812 gaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccggg 847871
Query: 785 aaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaag 844
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 847872 aaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaag 847931
Query: 845 ctgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcc 904
||||| || | |||||| | ||||||| | |||||||| ||||||| || |||
Sbjct: 847932 ctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcc 847991
Query: 905 atcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgccc 964
||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 847992 atcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgccc 848051
Query: 965 gccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaag 1024
||||||||| ||||||||||| ||||||| ||||| |||||||| | | |||||||
Sbjct: 848052 agcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaag 848111
Query: 1025 ctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcg 1084
||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
Sbjct: 848112 ctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgcc 848171
Query: 1085 ctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaag 1144
|| |||||| | || |||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 848172 ctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaa 848231
Query: 1145 agccccaaccaggt 1158
| |||||||||||
Sbjct: 848232 ggacccaaccaggt 848245
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 847166 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 847225
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 847226 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 847285
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 847286 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 847345
Query: 624 tg 625
||
Sbjct: 847346 tg 847347
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 848641 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 848700
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 848701 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 848757
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 832580 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 832639
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 832640 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 832699
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 832700 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 832759
Query: 625 g 625
|
Sbjct: 832760 g 832760
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 833423 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 833482
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 833483 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 833542
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 833543 atcgccgagtggaggacgcacc 833564
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 833105 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 833164
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 833165 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 833224
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 833225 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 833270
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 832421 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 832473
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 846827 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 846876
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 846995 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 847054
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 847055 acgagtgggacg 847066
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 832790 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 832835
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 832875 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 832934
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 832935 tgggacgtggtgaacgagaacctccact 832962
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 832317 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 832366
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 416 bits (210), Expect = e-113
Identities = 423/494 (85%)
Strand = Plus / Plus
Query: 665 cacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaacctt 724
|||||||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 10214268 cacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctg 10214327
Query: 725 gcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc 784
| ||||| ||||| || |||||||||||||||||||| || ||| | | ||||||||
Sbjct: 10214328 gaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccggg 10214387
Query: 785 aaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaag 844
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10214388 aaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaag 10214447
Query: 845 ctgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcc 904
||||| || | |||||| | ||||||| | |||||||| ||||||| || |||
Sbjct: 10214448 ctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcc 10214507
Query: 905 atcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgccc 964
||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 10214508 atcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgccc 10214567
Query: 965 gccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaag 1024
||||||||| ||||||||||| ||||||| ||||| |||||||| | | |||||||
Sbjct: 10214568 agcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaag 10214627
Query: 1025 ctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcg 1084
||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
Sbjct: 10214628 ctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgcc 10214687
Query: 1085 ctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaag 1144
|| |||||| | || |||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 10214688 ctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaa 10214747
Query: 1145 agccccaaccaggt 1158
| |||||||||||
Sbjct: 10214748 ggacccaaccaggt 10214761
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 10213682 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 10213741
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 10213742 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 10213801
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 10213802 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 10213861
Query: 624 tg 625
||
Sbjct: 10213862 tg 10213863
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 10215157 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 10215216
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 10215217 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 10215273
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 10199096 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 10199155
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 10199156 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 10199215
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 10199216 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 10199275
Query: 625 g 625
|
Sbjct: 10199276 g 10199276
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 10199939 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 10199998
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 10199999 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 10200058
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 10200059 atcgccgagtggaggacgcacc 10200080
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 10199621 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 10199680
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 10199681 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 10199740
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 10199741 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 10199786
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 10198937 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 10198989
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 10213343 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 10213392
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 10213511 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 10213570
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 10213571 acgagtgggacg 10213582
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 10199306 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 10199351
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 10199391 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 10199450
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 10199451 tgggacgtggtgaacgagaacctccact 10199478
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 10198833 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 10198882
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNAb0023M11, complete sequence
Length = 120228
Score = 416 bits (210), Expect = e-113
Identities = 423/494 (85%)
Strand = Plus / Plus
Query: 665 cacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaacctt 724
|||||||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 55821 cacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctg 55880
Query: 725 gcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc 784
| ||||| ||||| || |||||||||||||||||||| || ||| | | ||||||||
Sbjct: 55881 gaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccggg 55940
Query: 785 aaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaag 844
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 55941 aaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaag 56000
Query: 845 ctgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcc 904
||||| || | |||||| | ||||||| | |||||||| ||||||| || |||
Sbjct: 56001 ctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcc 56060
Query: 905 atcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgccc 964
||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 56061 atcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgccc 56120
Query: 965 gccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaag 1024
||||||||| ||||||||||| ||||||| ||||| |||||||| | | |||||||
Sbjct: 56121 agcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaag 56180
Query: 1025 ctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcg 1084
||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
Sbjct: 56181 ctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgcc 56240
Query: 1085 ctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaag 1144
|| |||||| | || |||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 56241 ctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaa 56300
Query: 1145 agccccaaccaggt 1158
| |||||||||||
Sbjct: 56301 ggacccaaccaggt 56314
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 55235 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 55294
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 55295 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 55354
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 55355 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 55414
Query: 624 tg 625
||
Sbjct: 55415 tg 55416
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 56710 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 56769
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 56770 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 56826
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 40649 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 40708
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 40709 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 40768
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 40769 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 40828
Query: 625 g 625
|
Sbjct: 40829 g 40829
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 41492 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 41551
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 41552 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 41611
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 41612 atcgccgagtggaggacgcacc 41633
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 41174 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 41233
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 41234 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 41293
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 41294 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 41339
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 40490 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 40542
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 54896 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 54945
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 55064 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 55123
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 55124 acgagtgggacg 55135
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 40859 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 40904
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 40944 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 41003
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 41004 tgggacgtggtgaacgagaacctccact 41031
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 40386 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 40435
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 416 bits (210), Expect = e-113
Identities = 423/494 (85%)
Strand = Plus / Plus
Query: 665 cacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaacctt 724
|||||||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 10220307 cacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctg 10220366
Query: 725 gcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc 784
| ||||| ||||| || |||||||||||||||||||| || ||| | | ||||||||
Sbjct: 10220367 gaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccggg 10220426
Query: 785 aaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaag 844
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10220427 aaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaag 10220486
Query: 845 ctgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcc 904
||||| || | |||||| | ||||||| | |||||||| ||||||| || |||
Sbjct: 10220487 ctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcc 10220546
Query: 905 atcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgccc 964
||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 10220547 atcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgccc 10220606
Query: 965 gccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaag 1024
||||||||| ||||||||||| ||||||| ||||| |||||||| | | |||||||
Sbjct: 10220607 agcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaag 10220666
Query: 1025 ctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcg 1084
||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
Sbjct: 10220667 ctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgcc 10220726
Query: 1085 ctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaag 1144
|| |||||| | || |||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 10220727 ctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaa 10220786
Query: 1145 agccccaaccaggt 1158
| |||||||||||
Sbjct: 10220787 ggacccaaccaggt 10220800
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 10219721 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 10219780
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 10219781 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 10219840
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 10219841 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 10219900
Query: 624 tg 625
||
Sbjct: 10219901 tg 10219902
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 10221196 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 10221255
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 10221256 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 10221312
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 10205135 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 10205194
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 10205195 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 10205254
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 10205255 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 10205314
Query: 625 g 625
|
Sbjct: 10205315 g 10205315
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 10205978 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 10206037
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 10206038 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 10206097
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 10206098 atcgccgagtggaggacgcacc 10206119
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 10205660 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 10205719
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 10205720 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 10205779
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 10205780 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 10205825
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 10204976 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 10205028
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 10219382 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 10219431
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 10219550 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 10219609
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 10219610 acgagtgggacg 10219621
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 10205345 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 10205390
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 10205430 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 10205489
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 10205490 tgggacgtggtgaacgagaacctccact 10205517
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 10204872 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 10204921
>gb|AACV01021314.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021314, whole
genome shotgun sequence
Length = 27428
Score = 335 bits (169), Expect = 5e-089
Identities = 362/425 (85%), Gaps = 1/425 (0%)
Strand = Plus / Minus
Query: 734 aaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatc 793
||||| || |||||||||||||||||||| || ||| | | |||||||| ||||| |||
Sbjct: 27425 aaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatc 27366
Query: 794 cactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggcccc 853
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 27365 -actgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccg 27307
Query: 854 atggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgccatcctattc 913
| |||||| | ||||||| | |||||||| ||||||| || |||||||| |||
Sbjct: 27306 aacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttc 27247
Query: 914 atgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgcccgccaagtac 973
|||||||| ||||||||||||||||||||||| || |||||||| |||||| |||||||
Sbjct: 27246 atgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtac 27187
Query: 974 gtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagctcggcgtc 1033
|| ||||||||||| ||||||| ||||| |||||||| | | ||||||||||||||||
Sbjct: 27186 gtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtc 27127
Query: 1034 ggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgctggacacg 1093
|||||||||||||||||| ||| || |||||||| |||||||||||| | || ||||||
Sbjct: 27126 ggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgccctcgacacg 27067
Query: 1094 ctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaac 1153
| || |||| ||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 27066 ttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaac 27007
Query: 1154 caggt 1158
|||||
Sbjct: 27006 caggt 27002
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Minus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 26606 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 26547
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 26546 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 26490
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 335 bits (169), Expect = 5e-089
Identities = 362/425 (85%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 734 aaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatc 793
||||| || |||||||||||||||||||| || ||| | | |||||||| ||||| |||
Sbjct: 1170871 aaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatc 1170930
Query: 794 cactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggcccc 853
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1170931 -actgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccg 1170989
Query: 854 atggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgccatcctattc 913
| |||||| | ||||||| | |||||||| ||||||| || |||||||| |||
Sbjct: 1170990 aacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttc 1171049
Query: 914 atgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgcccgccaagtac 973
|||||||| ||||||||||||||||||||||| || |||||||| |||||| |||||||
Sbjct: 1171050 atgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtac 1171109
Query: 974 gtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagctcggcgtc 1033
|| ||||||||||| ||||||| ||||| |||||||| | | ||||||||||||||||
Sbjct: 1171110 gtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtc 1171169
Query: 1034 ggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgctggacacg 1093
|||||||||||||||||| ||| || |||||||| |||||||||||| | || ||||||
Sbjct: 1171170 ggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgccctcgacacg 1171229
Query: 1094 ctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaac 1153
| || |||| ||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 1171230 ttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaac 1171289
Query: 1154 caggt 1158
|||||
Sbjct: 1171290 caggt 1171294
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 1170381 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 1170440
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1170441 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 1170500
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 1170501 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 1170560
Query: 624 tg 625
||
Sbjct: 1170561 tg 1170562
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 1171690 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 1171749
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 1171750 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 1171806
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 1156601 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 1156660
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 1156661 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 1156720
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 1156721 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 1156780
Query: 625 g 625
|
Sbjct: 1156781 g 1156781
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 1157444 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 1157503
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 1157504 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 1157563
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 1157564 atcgccgagtggaggacgcacc 1157585
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 1157126 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 1157185
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 1157186 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 1157245
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 1157246 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 1157291
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 1156442 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 1156494
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1170042 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 1170091
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 1170210 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 1170269
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 1170270 acgagtgggacg 1170281
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 1156811 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 1156856
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 1156896 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 1156955
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 1156956 tgggacgtggtgaacgagaacctccact 1156983
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 1156338 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 1156387
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 335 bits (169), Expect = 5e-089
Identities = 362/425 (85%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 734 aaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatc 793
||||| || |||||||||||||||||||| || ||| | | |||||||| ||||| |||
Sbjct: 9561189 aaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatc 9561248
Query: 794 cactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggcccc 853
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 9561249 -actgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccg 9561307
Query: 854 atggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgccatcctattc 913
| |||||| | ||||||| | |||||||| ||||||| || |||||||| |||
Sbjct: 9561308 aacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttc 9561367
Query: 914 atgaacgaattcaacacgctggagcagcccggcgatcccaaccctgtgcccgccaagtac 973
|||||||| ||||||||||||||||||||||| || |||||||| |||||| |||||||
Sbjct: 9561368 atgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtac 9561427
Query: 974 gtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagctcggcgtc 1033
|| ||||||||||| ||||||| ||||| |||||||| | | ||||||||||||||||
Sbjct: 9561428 gtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtc 9561487
Query: 1034 ggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgctggacacg 1093
|||||||||||||||||| ||| || |||||||| |||||||||||| | || ||||||
Sbjct: 9561488 ggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgccctcgacacg 9561547
Query: 1094 ctcgccaagctgaagctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaac 1153
| || |||| ||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 9561548 ttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaac 9561607
Query: 1154 caggt 1158
|||||
Sbjct: 9561608 caggt 9561612
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 9560699 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 9560758
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 9560759 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 9560818
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 9560819 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 9560878
Query: 624 tg 625
||
Sbjct: 9560879 tg 9560880
Score = 137 bits (69), Expect = 2e-029
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 1220 atgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttc 1279
|||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||||||
Sbjct: 9562008 atgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttc 9562067
Query: 1280 aagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcac 1336
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 9562068 aagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcac 9562124
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 9546919 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 9546978
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 9546979 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 9547038
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 9547039 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 9547098
Query: 625 g 625
|
Sbjct: 9547099 g 9547099
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 9547762 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 9547821
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 9547822 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 9547881
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 9547882 atcgccgagtggaggacgcacc 9547903
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 9547444 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 9547503
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 9547504 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 9547563
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 9547564 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 9547609
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 9546760 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 9546812
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 9560360 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 9560409
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 9560528 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 9560587
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 9560588 acgagtgggacg 9560599
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 9547129 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 9547174
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 9547214 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 9547273
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 9547274 tgggacgtggtgaacgagaacctccact 9547301
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 9546656 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 9546705
>gb|AU101159.1|AU101159 AU101159 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2034, mRNA sequence
Length = 711
Score = 252 bits (127), Expect = 6e-064
Identities = 271/319 (84%)
Strand = Plus / Plus
Query: 1018 cctcaagctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgag 1077
|||||||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||
Sbjct: 74 cctcaagctcggcgtcggcctcgagacccacttctccaccccaaacatcccttacatgag 133
Query: 1078 gagctcgctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgt 1137
|||| | || |||||| | || |||| ||||| |||||||||||||||||||| |||||
Sbjct: 134 gagcgccctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgt 193
Query: 1138 cgtcaagagccccaaccaggtcaagtacctggagcaggtgctcagggaaggcttcgccca 1197
|||||| | ||||||||||| |||| | ||||||||||||| |||||||| | ||| ||
Sbjct: 194 cgtcaaaggacccaaccaggtgaagttcttggagcaggtgctgagggaagggtacgcgca 253
Query: 1198 ccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtcat 1257
||| || |||| || | |||||||| |||||||| |||| ||| |||||||| ||
Sbjct: 254 cccgtcggtgaacgggatgataatgtgggcggcgtggcacgccaagggttgctacgtgat 313
Query: 1258 gtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcat 1317
|||||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||
Sbjct: 314 gtgcctgacggacaacagcttcaagaacctgcccgttgggaccctcgtcgacaagctgat 373
Query: 1318 cgccgagtggaagacgcac 1336
|||||||||||||||||||
Sbjct: 374 cgccgagtggaagacgcac 392
>gb|C72685.1|C72685 C72685 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2054_1A, mRNA sequence
Length = 319
Score = 226 bits (114), Expect = 3e-056
Identities = 248/292 (84%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 666 acaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctcaaccttg 725
||||||| ||||||||||||||||||||||||||| ||||||||| ||| || ||||| |
Sbjct: 1 acaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctgg 60
Query: 726 cgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggca 785
||||| ||||| || |||||||||||||||||||| || ||| | | ||| | || |
Sbjct: 61 accagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacncggg-a 119
Query: 786 aggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagacgaagc 845
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120 aggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagc 179
Query: 846 tgggccccatggcgtcggcacagatctaccagcaggtggggcagctggaccgcaatgcca 905
|||| || | |||||| | ||||||| | |||||||| ||||||| || ||||
Sbjct: 180 tggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgcca 239
Query: 906 tcctattcatgaacgaattcaacacgctggagcagcccggcgatcccaaccc 957
|||| ||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct: 240 tcctcttcatgaacgagttnaacacgctggagcagcccggtgaccccaaccc 291
>gb|AACV01021313.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021313,
whole genome shotgun sequence
Length = 3124
Score = 210 bits (106), Expect = 2e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 444 tcgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcc 503
||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 437 tcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacc 378
Query: 504 tcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgaga 563
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 377 tgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgaga 318
Query: 564 tgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgcca 623
||||||||||||||| ||||||| |||||||| | |||||||||||||| | |||||||
Sbjct: 317 tgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgcca 258
Query: 624 tg 625
||
Sbjct: 257 tg 256
Score = 75.8 bits (38), Expect = 8e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 197 gcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactc 246
|||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 776 gcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactc 727
Score = 71.9 bits (36), Expect = 1e-009
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||| |||| || || ||||||||| ||||||| || ||||||||||| ||||| ||||
Sbjct: 608 agagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcg 549
Query: 333 acgagtgggacg 344
||||||||||||
Sbjct: 548 acgagtgggacg 537
>gb|CG408712.1|CG408712 Ds405 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 201
Score = 174 bits (88), Expect = 1e-040
Identities = 172/200 (86%)
Strand = Plus / Plus
Query: 743 atgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatccactgggac 802
|||||||||||||||||||| || ||| | | |||||||| ||||| ||||||||||||
Sbjct: 2 atgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggac 61
Query: 803 gtggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcg 862
|||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||
Sbjct: 62 gtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcg 121
Query: 863 gcacagatctaccagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaa 922
| ||||||| | |||||||| ||||||| || |||||||| |||||||||||
Sbjct: 122 ccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgag 181
Query: 923 ttcaacacgctggagcagcc 942
||||||||||||||||||||
Sbjct: 182 ttcaacacgctggagcagcc 201
>gb|CG408978.1|CG408978 Ds672 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 201
Score = 174 bits (88), Expect = 1e-040
Identities = 172/200 (86%)
Strand = Plus / Plus
Query: 743 atgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaaggtcatccactgggac 802
|||||||||||||||||||| || ||| | | |||||||| ||||| ||||||||||||
Sbjct: 2 atgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggac 61
Query: 803 gtggtgaacgagaacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcg 862
|||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||
Sbjct: 62 gtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcg 121
Query: 863 gcacagatctaccagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaa 922
| ||||||| | |||||||| ||||||| || |||||||| |||||||||||
Sbjct: 122 ccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgag 181
Query: 923 ttcaacacgctggagcagcc 942
||||||||||||||||||||
Sbjct: 182 ttcaacacgctggagcagcc 201
>gb|AACV01021312.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021312, whole
genome shotgun sequence
Length = 44883
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 33841 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 33900
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 33901 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 33960
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 33961 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 34020
Query: 625 g 625
|
Sbjct: 34021 g 34021
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 34684 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 34743
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 34744 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 34803
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 34804 atcgccgagtggaggacgcacc 34825
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 34366 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 34425
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 34426 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 34485
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 34486 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 34531
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 33682 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 33734
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 34051 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 34096
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 34136 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 34195
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 34196 tgggacgtggtgaacgagaacctccact 34223
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 33578 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 33627
>ref|NM_195950.1| Oryza sativa (japonica cultivar-group) putative 1,4-beta-xylanase
(OSJNBb0023M11.19), mRNA
Length = 1620
Score = 137 bits (69), Expect = 2e-029
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 445 cgagctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcct 504
|||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| | |
Sbjct: 552 cgagctcctccgccccggcttccccttcggcaacgcgatgacccgggagatcctggacaa 611
Query: 505 cccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagat 564
|||||| |||||| |||||||| ||||||| |||| ||||| || ||||||||||||||
Sbjct: 612 cccggcgtacgagcagtggttcgcgtcgcggttcacggtggcgacgttcgagaacgagat 671
Query: 565 gaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgttccggacgccat 624
|||||||||| ||| ||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 672 gaagtggtacgccacggaggggaggcaggggcacgaggactaccgcgtcccggacgccat 731
Query: 625 g 625
|
Sbjct: 732 g 732
Score = 123 bits (62), Expect = 4e-025
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 1196 caccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtc 1255
||||| ||||| || ||||| || |||||||| |||||||| |||| || ||||||||
Sbjct: 1309 cacccgaacgtggatggcatggtgatgtgggcggcgtggcacgccacggcgtgctacgtg 1368
Query: 1256 atgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctc 1315
|||||||| |||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 1369 atgtgcctgacggacgacgagttcaagaacctcgccgtcggcgacgtcgtcgacaagctc 1428
Query: 1316 atcgccgagtggaagacgcacc 1337
||||||||||||| ||||||||
Sbjct: 1429 atcgccgagtggaggacgcacc 1450
Score = 95.6 bits (48), Expect = 8e-017
Identities = 137/166 (82%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 967 caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
||||||||| ||||||||||||||||| || || | |||||||||| ||||| |||||
Sbjct: 1077 caagtacgtcgccaagatgaaccagatacggtccttccccggcaacggcggcctgaagct 1136
Query: 1027 cggcgtcggcctcgagagccacttcag---cacacccaacatcccgtacatgaggagctc 1083
|| |||||| ||||||||||||||| | ||| || |||||||| | |||| | | |
Sbjct: 1137 cgccgtcgggctcgagagccacttcggtgccaccccaaacatccccttcatgcgcgccac 1196
Query: 1084 gctggacacgctcgccaagctgaagctgcccatgtggctcaccgag 1129
||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 1197 gctggacacgctcgcgcagctcaagctccccatctggctcaccgag 1242
Score = 81.8 bits (41), Expect = 1e-012
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 292 catctgggtggacagtgtctcgctgcagcccttcaccttcgacgagtgggacg 344
||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 393 catctgggtggacagcgtgtcgctgcagccgttcaccttcgacgagtgggacg 445
Score = 60.0 bits (30), Expect = 4e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatg 700
||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 762 ggtgcgcggccacaacgtgttctgggatgaccagagcacgcagatg 807
Score = 52.0 bits (26), Expect = 0.001
Identities = 73/88 (82%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 740 gccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggc---aaggtcatccac 796
|||||| | |||||||||| |||||||||||| | |||| |||| | ||| ||| |
Sbjct: 847 gccatggacaagcggctcaggtccgtcgtgtcgcggtacggcggcggcagggtgatcggc 906
Query: 797 tgggacgtggtgaacgagaacctgcact 824
||||||||||||||||||||||| ||||
Sbjct: 907 tgggacgtggtgaacgagaacctccact 934
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 188 gccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgac 237
|||| ||| ||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 289 gccaccgtcgccaagtccggctgctggagcatgatcaagggcggcatgac 338
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0006P09, complete sequence
Length = 153950
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 21002 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 20943
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 20942 gacaagctcatctgggagtggaagacgc 20915
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 18297 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 18238
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 18237 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 18178
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 18177 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 18118
Query: 837 ag 838
||
Sbjct: 18117 ag 18116
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 17725 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 17666
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 17665 cccgtcggcgacgccatcgacaagctc 17639
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 21735 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 21676
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 9114 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 9173
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 9370 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 9429
Query: 836 gag 838
|||
Sbjct: 9430 gag 9432
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 21458 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 21417
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 9843 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 9902
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 9903 cgtcgaccgcctcatcaccgagtgga 9928
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 18478 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 18419
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 18418 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 18370
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 17988 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 17929
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 17928 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 17869
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 17868 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 17820
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 9249 ggtgcgcgggcacaacgtgttctgggacgacccgaac 9285
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 21600 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 21543
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 21342 catgaacgagttcaacacgctggagcagccgggcga 21307
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 9508 ttcatgaacgagtacaacacgctggagcagccgggcga 9545
>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
clone OSJNBa0021H20, complete sequence
Length = 133079
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 123242 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 123183
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 123182 gacaagctcatctgggagtggaagacgc 123155
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 120536 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 120477
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 120476 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 120417
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 120416 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 120357
Query: 837 ag 838
||
Sbjct: 120356 ag 120355
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 119964 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 119905
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 119904 cccgtcggcgacgccatcgacaagctc 119878
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 123975 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 123916
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 111350 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 111409
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 111606 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 111665
Query: 836 gag 838
|||
Sbjct: 111666 gag 111668
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 123698 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 123657
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 112079 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 112138
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 112139 cgtcgaccgcctcatcaccgagtgga 112164
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 120717 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 120658
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 120657 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 120609
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 120227 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 120168
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 120167 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 120108
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 120107 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 120059
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 111485 ggtgcgcgggcacaacgtgttctgggacgacccgaac 111521
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 123840 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 123783
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 123582 catgaacgagttcaacacgctggagcagccgggcga 123547
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 111744 ttcatgaacgagtacaacacgctggagcagccgggcga 111781
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0009J13, from chromosome 3, complete sequence
Length = 147205
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 6008 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 5949
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 5948 gacaagctcatctgggagtggaagacgc 5921
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 3302 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 3243
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 3242 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 3183
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 3182 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 3123
Query: 837 ag 838
||
Sbjct: 3122 ag 3121
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2730 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 2671
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 2670 cccgtcggcgacgccatcgacaagctc 2644
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 6741 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 6682
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 6464 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 6423
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 3483 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 3424
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 3423 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 3375
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 2993 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 2934
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 2933 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 2874
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 2873 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 2825
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 6606 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 6549
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 6348 catgaacgagttcaacacgctggagcagccgggcga 6313
>gb|AACV01006065.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006065, whole
genome shotgun sequence
Length = 46539
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 31717 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 31658
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 31657 gacaagctcatctgggagtggaagacgc 31630
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 29011 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 28952
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 28951 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 28892
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 28891 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 28832
Query: 837 ag 838
||
Sbjct: 28831 ag 28830
Score = 91.7 bits (46), Expect = 1e-015
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 1238 gccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggc 1297
|||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct: 28434 gccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctccccgtcggc 28375
Query: 1298 gacctcgtcgacaagctc 1315
||| | |||||||||||
Sbjct: 28374 gacgccatcgacaagctc 28357
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 32450 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 32391
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 19829 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 19888
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 20085 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 20144
Query: 836 gag 838
|||
Sbjct: 20145 gag 20147
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 32173 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 32132
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 20558 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 20617
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 20618 cgtcgaccgcctcatcaccgagtgga 20643
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 29192 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 29133
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 29132 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 29084
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 28702 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 28643
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 28642 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 28583
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 28582 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 28534
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 19964 ggtgcgcgggcacaacgtgttctgggacgacccgaac 20000
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 32315 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 32258
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 32057 catgaacgagttcaacacgctggagcagccgggcga 32022
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 20223 ttcatgaacgagtacaacacgctggagcagccgggcga 20260
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 463388 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 463329
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 463328 gacaagctcatctgggagtggaagacgc 463301
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 460682 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 460623
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 460622 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 460563
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 460562 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 460503
Query: 837 ag 838
||
Sbjct: 460502 ag 460501
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 460110 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 460051
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 460050 cccgtcggcgacgccatcgacaagctc 460024
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 464121 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 464062
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 451496 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 451555
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 451752 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 451811
Query: 836 gag 838
|||
Sbjct: 451812 gag 451814
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 463844 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 463803
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 452225 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 452284
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 452285 cgtcgaccgcctcatcaccgagtgga 452310
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 460863 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 460804
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 460803 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 460755
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 460373 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 460314
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 460313 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 460254
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 460253 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 460205
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 451631 ggtgcgcgggcacaacgtgttctgggacgacccgaac 451667
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 463986 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 463929
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 463728 catgaacgagttcaacacgctggagcagccgggcga 463693
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 451890 ttcatgaacgagtacaacacgctggagcagccgggcga 451927
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 5319686 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 5319627
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 5319626 gacaagctcatctgggagtggaagacgc 5319599
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 5316980 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 5316921
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 5316920 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 5316861
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 5316860 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 5316801
Query: 837 ag 838
||
Sbjct: 5316800 ag 5316799
Score = 91.7 bits (46), Expect = 1e-015
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 1238 gccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggc 1297
|||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct: 5316403 gccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctccccgtcggc 5316344
Query: 1298 gacctcgtcgacaagctc 1315
||| | |||||||||||
Sbjct: 5316343 gacgccatcgacaagctc 5316326
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5320419 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5320360
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5307798 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5307857
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 5308054 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 5308113
Query: 836 gag 838
|||
Sbjct: 5308114 gag 5308116
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5320142 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 5320101
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 5308527 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 5308586
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 5308587 cgtcgaccgcctcatcaccgagtgga 5308612
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 5317161 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 5317102
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 5317101 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 5317053
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 5316671 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 5316612
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 5316611 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 5316552
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 5316551 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 5316503
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 5307933 ggtgcgcgggcacaacgtgttctgggacgacccgaac 5307969
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 5320284 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 5320227
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 5320026 catgaacgagttcaacacgctggagcagccgggcga 5319991
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 5308192 ttcatgaacgagtacaacacgctggagcagccgggcga 5308229
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 7595308 tacctggagcaggtgctcaggga 7595330
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 5512048 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 5511989
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 5511988 gacaagctcatctgggagtggaagacgc 5511961
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 5509342 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 5509283
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 5509282 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 5509223
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 5509222 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 5509163
Query: 837 ag 838
||
Sbjct: 5509162 ag 5509161
Score = 91.7 bits (46), Expect = 1e-015
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 1238 gccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggc 1297
|||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct: 5508765 gccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctccccgtcggc 5508706
Query: 1298 gacctcgtcgacaagctc 1315
||| | |||||||||||
Sbjct: 5508705 gacgccatcgacaagctc 5508688
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5512781 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5512722
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5500160 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5500219
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 5500416 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 5500475
Query: 836 gag 838
|||
Sbjct: 5500476 gag 5500478
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5512504 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 5512463
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 5500889 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 5500948
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 5500949 cgtcgaccgcctcatcaccgagtgga 5500974
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 5509523 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 5509464
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 5509463 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 5509415
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 5509033 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 5508974
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 5508973 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 5508914
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 5508913 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 5508865
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 5500295 ggtgcgcgggcacaacgtgttctgggacgacccgaac 5500331
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 5512646 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 5512589
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 5512388 catgaacgagttcaacacgctggagcagccgggcga 5512353
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 5500554 ttcatgaacgagtacaacacgctggagcagccgggcga 5500591
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 7787670 tacctggagcaggtgctcaggga 7787692
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 5299055 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 5298996
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 5298995 gacaagctcatctgggagtggaagacgc 5298968
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 5296349 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 5296290
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 5296289 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 5296230
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 5296229 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 5296170
Query: 837 ag 838
||
Sbjct: 5296169 ag 5296168
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 5295777 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 5295718
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 5295717 cccgtcggcgacgccatcgacaagctc 5295691
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5299788 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5299729
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5287163 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5287222
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 5287419 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 5287478
Query: 836 gag 838
|||
Sbjct: 5287479 gag 5287481
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5299511 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 5299470
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 5287892 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 5287951
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 5287952 cgtcgaccgcctcatcaccgagtgga 5287977
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 5296530 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 5296471
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 5296470 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 5296422
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 5296040 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 5295981
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 5295980 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 5295921
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 5295920 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 5295872
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 5287298 ggtgcgcgggcacaacgtgttctgggacgacccgaac 5287334
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 5299653 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 5299596
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 5299395 catgaacgagttcaacacgctggagcagccgggcga 5299360
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 5287557 ttcatgaacgagtacaacacgctggagcagccgggcga 5287594
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 7569919 tacctggagcaggtgctcaggga 7569941
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 111 bits (56), Expect = 1e-021
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 5299840 tgctacgtcatgtgcctcaccgacaacaacttcaagaacctccccgccggcgacgtcgtc 5299781
Query: 1307 gacaagctcatcgccgagtggaagacgc 1334
|||||||||||| |||||||||||||
Sbjct: 5299780 gacaagctcatctgggagtggaagacgc 5299753
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 5297134 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 5297075
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 5297074 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 5297015
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 5297014 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 5296955
Query: 837 ag 838
||
Sbjct: 5296954 ag 5296953
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 5296562 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 5296503
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 5296502 cccgtcggcgacgccatcgacaagctc 5296476
Score = 79.8 bits (40), Expect = 5e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5300573 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5300514
Score = 71.9 bits (36), Expect = 1e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||| ||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 5287948 gtggttcgcgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 5288007
Score = 69.9 bits (35), Expect = 5e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
|||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 5288204 tacgccgggaagctcatcgcgtgggacgtggtgaacgagaacctgcacttctccttcttc 5288263
Query: 836 gag 838
|||
Sbjct: 5288264 gag 5288266
Score = 67.9 bits (34), Expect = 2e-008
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5300296 tgggacgtggtgaacgagaacctccacttcgacttcttcgag 5300255
Score = 67.9 bits (34), Expect = 2e-008
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
|||||||||||||||||||||||| |||||| |||||| ||||| || ||||||| |
Sbjct: 5288677 gggctgctacgtcatgtgcctcaccgacaacgacttcaacaacctgccgcagggcgacgt 5288736
Query: 1303 cgtcgacaagctcatcgccgagtgga 1328
||||||| |||||| |||||||||
Sbjct: 5288737 cgtcgaccgcctcatcaccgagtgga 5288762
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 5297315 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 5297256
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 5297255 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 5297207
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 5296825 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 5296766
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 5296765 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 5296706
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 5296705 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 5296657
Score = 65.9 bits (33), Expect = 7e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaac 691
|||||||||||||||||||||||||||||||| ||||
Sbjct: 5288083 ggtgcgcgggcacaacgtgttctgggacgacccgaac 5288119
Score = 60.0 bits (30), Expect = 4e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaag 712
|||||||||||||||| | ||||||||||||| || | |||||||| ||||||||||
Sbjct: 5300438 ggtgcgcgggcacaacatcttctgggacgacccgagcacgcagatggggtgggtgaag 5300381
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 913 catgaacgaattcaacacgctggagcagcccggcga 948
||||||||| |||||||||||||||||||| |||||
Sbjct: 5300180 catgaacgagttcaacacgctggagcagccgggcga 5300145
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 911 ttcatgaacgaattcaacacgctggagcagcccggcga 948
||||||||||| | |||||||||||||||||| |||||
Sbjct: 5288342 ttcatgaacgagtacaacacgctggagcagccgggcga 5288379
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 7572084 tacctggagcaggtgctcaggga 7572106
>dbj|AK105496.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C10, full
insert sequence
Length = 2315
Score = 107 bits (54), Expect = 2e-020
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 657 tgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccc 716
||||||| |||||||||||||||||||||||| || ||||||| | |||||| || |
Sbjct: 861 tgcgcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagc 920
Query: 717 tcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccct 776
| | | || ||||||||| |||||| ||||||||||||| | |||| | | ||
Sbjct: 921 tgggcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgct 980
Query: 777 acgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcg 836
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 981 acgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcg 1040
Query: 837 ag 838
||
Sbjct: 1041 ag 1042
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1433 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 1492
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 1493 cccgtcggcgacgccatcgacaagctc 1519
Score = 65.9 bits (33), Expect = 7e-008
Identities = 135/169 (79%)
Strand = Plus / Plus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || |||||||||| | | | ||||||| | |||||||
Sbjct: 1170 ccaagtacgtggccaagctcaagcagatccgcgagttcccgggcaacgccgacctcaagt 1229
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 1230 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 1289
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 1290 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 1338
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 680 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 739
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 740 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 788
>dbj|AK121289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C11, full
insert sequence
Length = 2020
Score = 101 bits (51), Expect = 1e-018
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1416 gcgtggcacgccaagggatgctacgtcatgtgcttcacagacaacagcttcaagaacctc 1475
Query: 1289 cccgtgggcgacctcgtcgacaagctc 1315
||||| |||||| | |||||||||||
Sbjct: 1476 cccgtcggcgacgccatcgacaagctc 1502
Score = 101 bits (51), Expect = 1e-018
Identities = 147/179 (82%)
Strand = Plus / Plus
Query: 660 gcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtgaagcccctca 719
|||| |||||||||||||||||||||||| || ||||||| | |||||| || ||
Sbjct: 847 gcggccacaacgtgttctgggacgaccaggacaagcagatggactgggtggagaagctgg 906
Query: 720 accttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacg 779
| | || ||||||||| |||||| ||||||||||||| | |||| | | |||||
Sbjct: 907 gcgtgccggagctcaaggaggccatggcgaagcggctcaaggacatcgtcacccgctacg 966
Query: 780 ccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
|||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 967 ccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaacttcttcgag 1025
Score = 65.9 bits (33), Expect = 7e-008
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 476 aacgcgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgc 535
|||||||| |||||||||||||| | | | |||| ||||||||||||||| || ||||
Sbjct: 665 aacgcgatgaccaaggagatcctggacatgccggagtacgagaagtggttcgcggcgcgg 724
Query: 536 ttcagcgtggccaccttcgagaacgagatgaagtggtacagcaccgagt 584
||| | || ||| | |||||||||||||||||||||||||| ||||
Sbjct: 725 ttccggtacgcgaccctggagaacgagatgaagtggtacagcacggagt 773
Score = 58.0 bits (29), Expect = 2e-005
Identities = 134/169 (79%)
Strand = Plus / Plus
Query: 966 ccaagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagc 1025
||||||||||||||||| | || ||| |||||| | | | ||||||| | |||||||
Sbjct: 1153 ccaagtacgtggccaagctcaagcaggtccgcgagttcccgggcaacgccgacctcaagt 1212
Query: 1026 tcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgc 1085
|||| |||||||||||||||||||| | | || |||||||| |||||| | ||||
Sbjct: 1213 acggcatcggcctcgagagccacttcgccgcgccgaacatcccctacatgcgtggctcca 1272
Query: 1086 tggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
| |||||||| || || ||| ||||||| |||||||||||||||||
Sbjct: 1273 tcgacacgctggcgcaggccaaggtgcccatctggctcaccgaggtgga 1321
>gb|C71791.1|C71791 C71791 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0353_1A, mRNA sequence
Length = 464
Score = 95.6 bits (48), Expect = 8e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1265 acggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgag 1324
||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct: 2 acggacaacagcttcaagaacctgcccgttgggaccctcgtcgacaagctgatcgccgag 61
Query: 1325 tggaagacgcac 1336
||||||||||||
Sbjct: 62 tggaagacgcac 73
>gb|C98508.1|C98508 C98508 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0353_6Z, mRNA sequence
Length = 394
Score = 95.6 bits (48), Expect = 8e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1265 acggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgag 1324
||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct: 1 acggacaacagcttcaagaacctgcccgttgggaccctcgtcgacaagctgatcgccgag 60
Query: 1325 tggaagacgcac 1336
||||||||||||
Sbjct: 61 tggaagacgcac 72
>gb|AZ125454.1|AZ125454 OSJNBb0092J15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0092J15f, DNA
sequence
Length = 447
Score = 67.9 bits (34), Expect = 2e-008
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagc 577
||||||||||||||| |||| ||| |||| ||||| |||||||||||||||||||||
Sbjct: 332 gtggttcacgtcgcggttcacggtgaccacgttcgaaaacgagatgaagtggtacagc 389
>dbj|AK059149.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B07, full
insert sequence
Length = 1437
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 887 tacctggagcaggtgctcaggga 909
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11,
complete sequence
Length = 113049
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 100980 tacctggagcaggtgctcaggga 101002
>gb|AACV01006196.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006196, whole
genome shotgun sequence
Length = 35290
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 10439 tacctggagcaggtgctcaggga 10417
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 46.1 bits (23), Expect = 0.067
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1163 tacctggagcaggtgctcaggga 1185
|||||||||||||||||||||||
Sbjct: 828314 tacctggagcaggtgctcaggga 828336
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,616,469
Number of Sequences: 438736
Number of extensions: 2616469
Number of successful extensions: 20242
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19461
Number of HSP's gapped (non-prelim): 744
length of query: 1827
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1805
effective length of database: 2,790,767,724
effective search space: 5037335741820
effective search space used: 5037335741820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)