BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230260.2.1
(863 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (j... 174 5e-041
dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA... 174 5e-041
gb|CB647560.1|CB647560 OSJNEb10I16.f OSJNEb Oryza sativa (j... 157 1e-035
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 139 3e-030
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 139 3e-030
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) c... 139 3e-030
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|CA758807.1|CA758807 BR030025000_PLATE_E11_85_086.ab1 OA ... 111 6e-022
gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid ... 68 9e-009
gb|CB672491.1|CB672491 OSJNEe06I21.f OSJNEe Oryza sativa (j... 58 8e-006
gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (j... 58 8e-006
gb|CB677602.1|CB677602 OSJNEe14L22.f OSJNEe Oryza sativa (j... 58 8e-006
ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA 58 8e-006
gb|CB674633.1|CB674633 OSJNEe09M09.r OSJNEe Oryza sativa (j... 54 1e-004
gb|CB677603.1|CB677603 OSJNEe14L22.r OSJNEe Oryza sativa (j... 54 1e-004
dbj|AP005440.2| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP004646.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01017440.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005575.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01020113.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01020115.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AQ272883.1|AQ272883 nbxb0028H10r CUGI Rice BAC Library O... 46 0.031
gb|CF306971.1|CF306971 HDA1--05-F22.g1 OsHDAC1-overexpressi... 46 0.031
dbj|AP005711.1| Oryza sativa (japonica cultivar-group) chro... 46 0.031
dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.031
dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.031
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 46 0.031
dbj|AP005396.3| Oryza sativa (japonica cultivar-group) geno... 46 0.031
gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) c... 46 0.031
gb|AACV01020541.1| Oryza sativa (japonica cultivar-group) c... 46 0.031
dbj|AK063484.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AC105363.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 44 0.12
gb|AACV01005779.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|XM_469994.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.12
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 44 0.12
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.12
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CF305867.1|CF305867 HDA1--01-P14.g1 OsHDAC1-overexpressi... 42 0.49
gb|CF306456.1|CF306456 HDA1--03-O09.g1 OsHDAC1-overexpressi... 42 0.49
dbj|AP003942.1| Oryza sativa (japonica cultivar-group) chro... 42 0.49
emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC O... 42 0.49
emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC O... 42 0.49
gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb00... 42 0.49
dbj|AP004163.3| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP005511.3| Oryza sativa (japonica cultivar-group) geno... 42 0.49
gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04... 42 0.49
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 42 0.49
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 42 0.49
emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC O... 42 0.49
gb|AACV01002773.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01003745.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01006833.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01008045.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01010599.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01013653.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01018958.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01020499.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01024881.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01025144.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.49
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 42 0.49
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.49
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.49
dbj|AP003524.3| Oryza sativa (japonica cultivar-group) geno... 42 0.49
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 42 0.49
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.49
dbj|AP004669.3| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP005862.2| Oryza sativa (japonica cultivar-group) geno... 42 0.49
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromoso... 42 0.49
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 42 0.49
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.49
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.49
gb|AC084295.10| Oryza sativa (japonica cultivar-group) chro... 42 0.49
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
>gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I16 3', mRNA sequence
Length = 764
Score = 174 bits (88), Expect = 5e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 450 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 509
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 510 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 569
Query: 714 taccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcc 773
||||| |||| ||| |||||||| ||||| |||||||||| || || ||||| || |||
Sbjct: 570 taccaatcctgattctttctgcataattcctcatctgaccaactgtcttcagtgaaagcc 629
Query: 774 tcgcccttaggccagtcaggattattgaacac 805
| |||| ||||||| ||||||| |||||||
Sbjct: 630 ttatcctttggccagttaggattactgaacac 661
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 237 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 296
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 297 gctgagctgcagatgtatcgtccggatgc 325
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full
insert sequence
Length = 1094
Score = 174 bits (88), Expect = 5e-041
Identities = 181/212 (85%)
Strand = Plus / Minus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 639 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 580
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 579 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 520
Query: 714 taccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcc 773
||||| |||| ||| |||||||| ||||| |||||||||| || || ||||| || |||
Sbjct: 519 taccaatcctgattctttctgcataattcctcatctgaccaactgtcttcagtgaaagcc 460
Query: 774 tcgcccttaggccagtcaggattattgaacac 805
| |||| ||||||| ||||||| |||||||
Sbjct: 459 ttatcctttggccagttaggattactgaacac 428
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 852 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 793
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 792 gctgagctgcagatgtatcgtccggatgc 764
>gb|CB647560.1|CB647560 OSJNEb10I16.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I16 5', mRNA sequence
Length = 631
Score = 157 bits (79), Expect = 1e-035
Identities = 154/179 (86%)
Strand = Plus / Minus
Query: 627 aatgatgggcaaatagttacaatgtctagcccagttttggctgcataagcaaaagcctca 686
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 631 aatgatgggcaaatagttacaatgtccagcccagtttttgctgcataagcaaaagcctca 572
Query: 687 tgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaatattcccca 746
| ||||||| ||||| |||||| ||||||| |||| ||| |||||||| ||||| ||
Sbjct: 571 cgctctgccaccgttttcgaaaggtaataccaatcctgattctttctgcataattcctca 512
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacac 805
|||||||| || || ||||| || |||| |||| ||||||| ||||||| |||||||
Sbjct: 511 tctgaccaactgtcttcagtgaaagccttatcctttggccagttaggattactgaacac 453
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02,
*** SEQUENCING IN PROGRESS ***
Length = 140327
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Minus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 28989 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 28930
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 28929 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 28870
Query: 714 taccattcct 723
||||| ||||
Sbjct: 28869 taccaatcct 28860
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 29453 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 29394
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 29393 gctgagctgcagatgtatcgtccggatgc 29365
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 15163 ggttgcagcaaaggtccaatcaccaacgatgggca 15129
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 2156580 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 2156639
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 2156640 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 2156699
Query: 714 taccattcct 723
||||| ||||
Sbjct: 2156700 taccaatcct 2156709
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 2156116 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 2156175
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 2156176 gctgagctgcagatgtatcgtccggatgc 2156204
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 2169997 ggttgcagcaaaggtccaatcaccaacgatgggca 2170031
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0029G06
Length = 169711
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 24776 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 24835
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 24836 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 24895
Query: 714 taccattcct 723
||||| ||||
Sbjct: 24896 taccaatcct 24905
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 24312 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 24371
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 24372 gctgagctgcagatgtatcgtccggatgc 24400
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 38193 ggttgcagcaaaggtccaatcaccaacgatgggca 38227
>gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014581, whole
genome shotgun sequence
Length = 21089
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Minus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 11239 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 11180
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 11179 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 11120
Query: 714 taccattcct 723
||||| ||||
Sbjct: 11119 taccaatcct 11110
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 11703 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 11644
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 11643 gctgagctgcagatgtatcgtccggatgc 11615
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 6058938 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 6058997
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 6058998 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 6059057
Query: 714 taccattcct 723
||||| ||||
Sbjct: 6059058 taccaatcct 6059067
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 6058474 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 6058533
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 6058534 gctgagctgcagatgtatcgtccggatgc 6058562
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 6078086 ggttgcagcaaaggtccaatcaccaacgatgggca 6078120
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 23757675 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 23757734
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 23757735 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 23757794
Query: 714 taccattcct 723
||||| ||||
Sbjct: 23757795 taccaatcct 23757804
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 23757211 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 23757270
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 23757271 gctgagctgcagatgtatcgtccggatgc 23757299
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 23776823 ggttgcagcaaaggtccaatcaccaacgatgggca 23776857
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 10847731 agtagtagcagcagcagcagc 10847751
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtct 653
||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 24691095 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgtcc 24691154
Query: 654 agcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaa 713
||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct: 24691155 agcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaaggtaa 24691214
Query: 714 taccattcct 723
||||| ||||
Sbjct: 24691215 taccaatcct 24691224
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 24690631 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 24690690
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 24690691 gctgagctgcagatgtatcgtccggatgc 24690719
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 24704512 ggttgcagcaaaggtccaatcaccaacgatgggca 24704546
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 10919479 agtagtagcagcagcagcagc 10919499
>gb|CA758807.1|CA758807 BR030025000_PLATE_E11_85_086.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030025000_PLATE_E11_85_086.ab1 similar to NP_180918.1|
(NM_128920) putative cinnamoyl-CoA reductase
[Arabidopsis thaliana] gi|2459448|gb|AAB80683.1|
(AC002332) putative cinnamoyl-CoA reductase [Arabidopsis
thaliana..., mRNA sequence
Length = 622
Score = 111 bits (56), Expect = 6e-022
Identities = 135/162 (83%)
Strand = Plus / Minus
Query: 644 tacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaatgtttt 703
||||||||| |||||||| | ||||||||||||||||||||| | ||||||| |||||
Sbjct: 622 tacaatgtccagcccagtntntgctgcataagcaaaagcctcacgctctgccaccgtttt 563
Query: 704 agaaaggaaataccattcctcattttttctgcaatattccccatctgaccagctatcctc 763
|||||| ||||||| |||| ||| |||||||| ||||| |||||||||| || || ||
Sbjct: 562 cgaaaggtaataccaatcctgattctttctgcataattcctcatctgaccaactgtcttc 503
Query: 764 agtaaaggcctcgcccttaggccagtcaggattattgaacac 805
||| || |||| |||| ||||||| ||||||| |||||||
Sbjct: 502 agtgaaagccttatcctttggccagttaggattactgaacac 461
>gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-D12, mRNA sequence
Length = 590
Score = 67.9 bits (34), Expect = 9e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 594 tttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgt 651
||||||| || ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 533 tttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatgt 590
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||| || ||||||||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 320 taagtataagttggatataaggtctttaaaatgtttatcatatcagagactcttattgga 379
Query: 438 ggtgaactgcagaggtatcgtcctgatgc 466
| ||| ||||||| ||||||||| |||||
Sbjct: 380 gctgagctgcagatgtatcgtccggatgc 408
>gb|CB672491.1|CB672491 OSJNEe06I21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06I21 5', mRNA sequence
Length = 603
Score = 58.0 bits (29), Expect = 8e-006
Identities = 166/212 (78%), Gaps = 6/212 (2%)
Strand = Plus / Minus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 588 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 529
Query: 699 gttttagaaaggaaa------taccattcctcattttttctgcaatattccccatctgac 752
|| || |||||| || ||||| |||||||| || ||||| ||| ||||||||
Sbjct: 528 gtattggaaaggtaataggggtaccactcctcattcttcctgcaggtctcctcatctgac 469
Query: 753 cagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacacagccgcc 812
||||| || || | |||| ||| ||| | ||||||| |||||||||||||| || |
Sbjct: 468 cagctgtcttcgttgaagggctcacccgttggccagttgggattattgaacactgcgaca 409
Query: 813 actgaagataccacaacaactctcttcgcttt 844
|||||||| ||||| ||||||| |||| ||||
Sbjct: 408 actgaagaaaccaccacaactcgcttcacttt 377
>gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M09 5', mRNA sequence
Length = 845
Score = 58.0 bits (29), Expect = 8e-006
Identities = 166/212 (78%), Gaps = 6/212 (2%)
Strand = Plus / Minus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 586 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 527
Query: 699 gttttagaaaggaaa------taccattcctcattttttctgcaatattccccatctgac 752
|| || |||||| || ||||| |||||||| || ||||| ||| ||||||||
Sbjct: 526 gtattggaaaggtaataggggtaccactcctcattcttcctgcaggtctcctcatctgac 467
Query: 753 cagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacacagccgcc 812
||||| || || | |||| ||| ||| | ||||||| |||||||||||||| || |
Sbjct: 466 cagctgtcttcgttgaagggctcacccgttggccagttgggattattgaacactgcgaca 407
Query: 813 actgaagataccacaacaactctcttcgcttt 844
|||||||| ||||| ||||||| |||| ||||
Sbjct: 406 actgaagaaaccaccacaactcgcttcacttt 375
>gb|CB677602.1|CB677602 OSJNEe14L22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14L22 5', mRNA sequence
Length = 893
Score = 58.0 bits (29), Expect = 8e-006
Identities = 166/212 (78%), Gaps = 6/212 (2%)
Strand = Plus / Minus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 638 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 579
Query: 699 gttttagaaaggaaa------taccattcctcattttttctgcaatattccccatctgac 752
|| || |||||| || ||||| |||||||| || ||||| ||| ||||||||
Sbjct: 578 gtattggaaaggtaataggggtaccactcctcattcttcctgcaggtctcctcatctgac 519
Query: 753 cagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacacagccgcc 812
||||| || || | |||| ||| ||| | ||||||| |||||||||||||| || |
Sbjct: 518 cagctgtcttcgttgaagggctcacccgttggccagttgggattattgaacactgcgaca 459
Query: 813 actgaagataccacaacaactctcttcgcttt 844
|||||||| ||||| ||||||| |||| ||||
Sbjct: 458 actgaagaaaccaccacaactcgcttcacttt 427
>ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 690
Score = 58.0 bits (29), Expect = 8e-006
Identities = 166/212 (78%), Gaps = 6/212 (2%)
Strand = Plus / Minus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 602 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 543
Query: 699 gttttagaaaggaaa------taccattcctcattttttctgcaatattccccatctgac 752
|| || |||||| || ||||| |||||||| || ||||| ||| ||||||||
Sbjct: 542 gtattggaaaggtaataggggtaccactcctcattcttcctgcaggtctcctcatctgac 483
Query: 753 cagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacacagccgcc 812
||||| || || | |||| ||| ||| | ||||||| |||||||||||||| || |
Sbjct: 482 cagctgtcttcgttgaagggctcacccgttggccagttgggattattgaacactgcgaca 423
Query: 813 actgaagataccacaacaactctcttcgcttt 844
|||||||| ||||| ||||||| |||| ||||
Sbjct: 422 actgaagaaaccaccacaactcgcttcacttt 391
>gb|CB674633.1|CB674633 OSJNEe09M09.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M09 3', mRNA sequence
Length = 843
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 285 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 335
>gb|CB677603.1|CB677603 OSJNEe14L22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14L22 3', mRNA sequence
Length = 841
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 327 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 377
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056D04
Length = 158118
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 96479 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 96529
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 97402 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 97461
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 97462 gtattggaaaggtaata 97478
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 97903 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 97962
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 97963 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 98002
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1122_A12
Length = 149011
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 50939 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 50989
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 51862 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 51921
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 51922 gtattggaaaggtaata 51938
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 52363 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 52422
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 52423 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 52462
>gb|AACV01017440.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017440, whole
genome shotgun sequence
Length = 10400
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 9881 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 9831
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 8958 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 8899
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 8898 gtattggaaaggtaata 8882
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 8457 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 8398
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 8397 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 8358
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 4659211 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 4659261
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 4660134 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 4660193
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 4660194 gtattggaaaggtaata 4660210
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 4660635 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 4660694
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 4660695 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 4660734
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 27095755 agtagtagcagcagcagcagc 27095735
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 4725526 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 4725576
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 4726449 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 4726508
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 4726509 gtattggaaaggtaata 4726525
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 4726950 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 4727009
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 4727010 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 4727049
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 4725526 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 4725576
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 4726449 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 4726508
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 4726509 gtattggaaaggtaata 4726525
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 4726950 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 4727009
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 4727010 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 4727049
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 26081780 agtagtagcagcagcagcagc 26081760
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagcttccgaagcttctc 331
|||||| |||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 4891685 gagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctc 4891735
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 639 atagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttctgccaat 698
|||||||||||||| | ||||||||| || || || ||||||||||| | ||||||| |
Sbjct: 4892608 atagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagt 4892667
Query: 699 gttttagaaaggaaata 715
|| || |||||| ||||
Sbjct: 4892668 gtattggaaaggtaata 4892684
Score = 48.1 bits (24), Expect = 0.008
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 745 catctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaaca 804
||||||||||||| || || | |||| ||| ||| | ||||||| |||||||||||||
Sbjct: 4893109 catctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaaca 4893168
Query: 805 cagccgccactgaagataccacaacaactctcttcgcttt 844
| || | |||||||| ||||| ||||||| |||| ||||
Sbjct: 4893169 ctgcgacaactgaagaaaccaccacaactcgcttcacttt 4893208
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 27333842 agtagtagcagcagcagcagc 27333822
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1596_C06
Length = 124721
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 18230 agtagtagcagcagcagcagccaaa 18206
>gb|AACV01020113.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020113,
whole genome shotgun sequence
Length = 2369
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 376 agtagtagcagcagcagcagccaaa 352
>gb|AACV01020115.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020115, whole
genome shotgun sequence
Length = 5952
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 1206 agtagtagcagcagcagcagccaaa 1230
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 2301894 agtagtagcagcagcagcagccaaa 2301870
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 5938483 agtagtagcagcagcagcagccaaa 5938459
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 5905513 agtagtagcagcagcagcagccaaa 5905489
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 11501347 ctgaaaagtagcagcagcagcagcagc 11501321
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 10776276 agtagtagcagcagcagcagc 10776296
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 15412294 agtagtagcagcagcagcagccaaa 15412270
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 15379324 agtagtagcagcagcagcagccaaa 15379300
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 20975158 ctgaaaagtagcagcagcagcagcagc 20975132
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 20250087 agtagtagcagcagcagcagc 20250107
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagccaaa 215
|||||||||||||||||||||||||
Sbjct: 16610091 agtagtagcagcagcagcagccaaa 16610067
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 22046437 ctgaaaagtagcagcagcagcagcagc 22046411
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 21345344 agtagtagcagcagcagcagc 21345364
>gb|AQ272883.1|AQ272883 nbxb0028H10r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028H10r, DNA sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.031
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 281 gagggtgtcctccatgggcctagaggtccaccctagctt 319
|||||| |||||||||||||| ||||||| ||||||||
Sbjct: 40 gagggtttcctccatgggcctgaaggtccaacctagctt 2
>gb|CF306971.1|CF306971 HDA1--05-F22.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--05-F22, mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 368 ggttgcagcaaaggtccaatcaccaacgatgggca 334
>dbj|AP005711.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0646H10, ***
SEQUENCING IN PROGRESS ***
Length = 152406
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 120978 ctgaaaagtagcagcagcagcagcagc 121004
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
insert sequence
Length = 1737
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 1073 ggttgcagcaaaggtccaatcaccaacgatgggca 1039
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
insert sequence
Length = 1232
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 626 ggttgcagcaaaggtccaatcaccaacgatgggca 592
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 177154 ctgaaaagtagcagcagcagcagcagc 177128
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0635G10
Length = 146728
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 88501 ctgaaaagtagcagcagcagcagcagc 88475
>gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014583, whole
genome shotgun sequence
Length = 16067
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 603 ggttgcaacaaaggtccaattaccaatgatgggca 637
||||||| |||||||||||| ||||| ||||||||
Sbjct: 5451 ggttgcagcaaaggtccaatcaccaacgatgggca 5485
>gb|AACV01020541.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020541, whole
genome shotgun sequence
Length = 12260
Score = 46.1 bits (23), Expect = 0.031
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 185 ctgaaaagtagtagcagcagcagcagc 211
||||||||||| |||||||||||||||
Sbjct: 4529 ctgaaaagtagcagcagcagcagcagc 4555
>dbj|AK063484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C01, full
insert sequence
Length = 1986
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 554 agcagcagcagcagccaaagcc 575
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
complete sequence
Length = 100986
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 190 aagtagtagcagcagcagcagc 211
||||||||||||||||||||||
Sbjct: 88396 aagtagtagcagcagcagcagc 88375
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence,
complete sequence
Length = 144487
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 4445 agcagcagcagcagccaaagcc 4466
>gb|AACV01005779.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005779, whole
genome shotgun sequence
Length = 59655
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aagtagtagcagcagcagcagc 211
||||||||||||||||||||||
Sbjct: 45327 aagtagtagcagcagcagcagc 45348
>gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008115, whole
genome shotgun sequence
Length = 32704
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 30480 agcagcagcagcagccaaagcc 30459
>ref|XM_469994.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 8122
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 494 agcagcagcagcagccaaagcc 515
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 190 aagtagtagcagcagcagcagc 211
||||||||||||||||||||||
Sbjct: 1184690 aagtagtagcagcagcagcagc 1184669
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 2419494 agcagcagcagcagccaaagcc 2419473
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 1531089 agtagtagcagcagcagcagc 1531069
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagccaaagcc 218
||||||||||||||||||||||
Sbjct: 6961976 agcagcagcagcagccaaagcc 6961955
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 5995797 agtagtagcagcagcagcagc 5995777
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,556,016
Number of Sequences: 438736
Number of extensions: 1556016
Number of successful extensions: 42009
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37186
Number of HSP's gapped (non-prelim): 4799
length of query: 863
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 842
effective length of database: 2,791,206,460
effective search space: 2350195839320
effective search space used: 2350195839320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)