BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (j... 365 2e-098
gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing t... 365 2e-098
dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH... 365 2e-098
dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA... 365 2e-098
dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA... 365 2e-098
ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA 365 2e-098
gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (j... 357 4e-096
gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid ... 242 2e-061
gb|C19110.1|C19110 C19110 Rice panicle at flowering stage O... 172 1e-040
gb|C98989.1|C98989 C98989 Rice panicle at flowering stage O... 172 1e-040
gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing t... 119 2e-024
dbj|AP004463.2| Oryza sativa (japonica cultivar-group) geno... 117 6e-024
dbj|AP005537.3| Oryza sativa (japonica cultivar-group) geno... 117 6e-024
gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) c... 117 6e-024
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 117 6e-024
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 117 6e-024
gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (j... 68 5e-009
dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
ref|XM_472778.1| Oryza sativa (japonica cultivar-group), p... 68 5e-009
dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene... 56 2e-005
gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromoso... 56 2e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
>gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09E12 3', mRNA sequence
Length = 836
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Minus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 553 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 494
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 493 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 434
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 433 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 374
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 373 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 314
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 313 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 254
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 253 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 194
>gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 547
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Minus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 530 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 471
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 470 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 411
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 410 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 351
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 350 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 291
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 290 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 231
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 230 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 171
>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine
aldehyde dehydrogenase, complete cds
Length = 1512
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 1153 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 1212
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 1213 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 1272
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 1273 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 1332
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 1333 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 1392
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1393 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 1452
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1453 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 1512
>dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B10, full
insert sequence
Length = 1317
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 811 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 870
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 871 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 930
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 931 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 990
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 991 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 1050
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1051 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 1110
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1111 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 1170
>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full
insert sequence
Length = 1807
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 1301 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 1360
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 1361 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 1420
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 1421 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 1480
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 1481 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 1540
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1541 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 1600
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1601 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 1660
>ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1806
Score = 365 bits (184), Expect = 2e-098
Identities = 316/360 (87%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 1300 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 1359
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 1360 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 1419
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 1420 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 1479
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 1480 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 1539
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1540 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 1599
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1600 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 1659
>gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13L16 3', mRNA sequence
Length = 870
Score = 357 bits (180), Expect = 4e-096
Identities = 315/360 (87%)
Strand = Plus / Minus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 644 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 585
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| |||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 584 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 525
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| |||| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct: 524 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 465
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 464 atctgggcgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 405
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 404 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 345
Query: 305 gtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaa 364
|| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 344 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 285
>gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-A07, mRNA sequence
Length = 476
Score = 242 bits (122), Expect = 2e-061
Identities = 224/258 (86%)
Strand = Plus / Minus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| ||||||| |||| |||||
Sbjct: 473 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagatattaactgag 414
Query: 167 gagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctccc 226
||||| ||||| |||||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 413 gagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttttgccaagctcca 354
Query: 227 tggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcattgataac 286
|||||||| |||||||| || || |||||||| ||||| ||||||||||||||||| |||
Sbjct: 353 tggggcgggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaac 294
Query: 287 tacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtatcga 346
||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||| |
Sbjct: 293 tacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaa 234
Query: 347 tccccctccaagctgtaa 364
||||| ||||||||||||
Sbjct: 233 tccccttccaagctgtaa 216
>gb|C19110.1|C19110 C19110 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_1A, mRNA sequence
Length = 460
Score = 172 bits (87), Expect = 1e-040
Identities = 194/228 (85%), Gaps = 2/228 (0%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| ||||| |||
Sbjct: 216 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaaganttt 275
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
||||||||||| ||||||||||| ||||||| ||||| || |||||| | |||||||||
Sbjct: 276 agcactgaagaagaagccattganttggccaacgatactcattatggtctggctggtgct 335
Query: 125 gtaatttctggtgatcgtg-agcgctgccagagattatctgaggagattgatgctggaat 183
|| |||| ||||| || | |||| |||||||||||| |||||||||| ||||| |||||
Sbjct: 336 gtgctttccggtgaccgcgaagcgatgccagagattaactgaggagatcgatgccggaat 395
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctgggg 231
||||||||| | |||||| | ||||||||||||| ||||| |||||
Sbjct: 396 tatctgggtgacctgctc-gaancctgcttctgccaagctccatgggg 442
>gb|C98989.1|C98989 C98989 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_3Z, mRNA sequence
Length = 363
Score = 172 bits (87), Expect = 1e-040
Identities = 161/185 (87%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 181 aattatctgggtaaactgctca-cagccctgcttctgccaggctccctggggcggtaaca 239
|||||||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||
Sbjct: 17 aattatctgggtgaactgctccgcaaccctgcttctgccaagctccatggggcgggaaca 76
Query: 240 agcgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtca 299
|||| | || |||||||| ||||| | ||||||||||||||| |||||||| |||||||
Sbjct: 77 agcgcancggctttggacgcgagctcgnagaagggggcattgacaactacctaagcgtca 136
Query: 300 agcaagtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagc 359
||||||| ||||||||| ||| |||||||||||||||||||| |||||| |||||||
Sbjct: 137 agcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagc 196
Query: 360 tgtaa 364
|||||
Sbjct: 197 tgtaa 201
>gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 608
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 494 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 553
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggt 112
||||||||||| |||||||||||| ||||||| ||||| || ||||||
Sbjct: 554 agcactgaagaagaagccattgaattggccaacgatactcattatggt 601
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0456B03
Length = 152973
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 8386 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 8445
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 8446 agcactgaagaagaagccattgaattggccaacgatactcagt 8488
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 8920 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 8979
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 8980 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 9029
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 9126 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 9185
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 9186 ggggatggtacaaatccccttccaagctgtaa 9217
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 8591 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 8650
Query: 167 g 167
|
Sbjct: 8651 g 8651
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056L09
Length = 152910
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 125504 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 125563
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 125564 agcactgaagaagaagccattgaattggccaacgatactcagt 125606
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 126038 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 126097
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 126098 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 126147
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 126244 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 126303
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 126304 ggggatggtacaaatccccttccaagctgtaa 126335
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 125709 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 125768
Query: 167 g 167
|
Sbjct: 125769 g 125769
>gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018493, whole
genome shotgun sequence
Length = 59473
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Minus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 54813 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 54754
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 54753 agcactgaagaagaagccattgaattggccaacgatactcagt 54711
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 54279 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 54220
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 54219 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 54170
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 54073 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 54014
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 54013 ggggatggtacaaatccccttccaagctgtaa 53982
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 54608 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 54549
Query: 167 g 167
|
Sbjct: 54548 g 54548
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 20139669 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 20139728
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 20139729 agcactgaagaagaagccattgaattggccaacgatactcagt 20139771
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 20140203 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 20140262
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 20140263 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 20140312
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 20140409 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 20140468
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 20140469 ggggatggtacaaatccccttccaagctgtaa 20140500
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 20139874 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 20139933
Query: 167 g 167
|
Sbjct: 20139934 g 20139934
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 11617853 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 11617912
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 11617913 agcactgaagaagaagccattgaattggccaacgatactcagt 11617955
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 11618387 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 11618446
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 11618447 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 11618496
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 11618593 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 11618652
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 11618653 ggggatggtacaaatccccttccaagctgtaa 11618684
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 11618058 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 11618117
Query: 167 g 167
|
Sbjct: 11618118 g 11618118
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 19219859 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 19219918
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 19219919 agcactgaagaagaagccattgaattggccaacgatactcagt 19219961
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 19220393 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 19220452
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 19220453 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 19220502
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 19220599 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 19220658
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 19220659 ggggatggtacaaatccccttccaagctgtaa 19220690
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 19220064 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 19220123
Query: 167 g 167
|
Sbjct: 19220124 g 19220124
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 117 bits (59), Expect = 6e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||| ||||||||||||| ||||| || |||||||| || ||||| |||||||||
Sbjct: 20377756 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 20377815
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||| |||||||||||| ||||||| ||||| ||||
Sbjct: 20377816 agcactgaagaagaagccattgaattggccaacgatactcagt 20377858
Score = 115 bits (58), Expect = 2e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 20378290 aggagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctc 20378349
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
| |||||||| |||||||| || || |||||||| ||||| |||||||||
Sbjct: 20378350 catggggcgggaacaagcgcagcggctttggacgcgagctcggagaaggg 20378399
Score = 103 bits (52), Expect = 9e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 20378496 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 20378555
Query: 333 ggggatggtatcgatccccctccaagctgtaa 364
|||||||||| |||||| ||||||||||||
Sbjct: 20378556 ggggatggtacaaatccccttccaagctgtaa 20378587
Score = 50.1 bits (25), Expect = 0.001
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 107 tatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgag 166
|||||| | ||||||||||| |||| ||||| || ||||| |||||||||||| |||||
Sbjct: 20377961 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 20378020
Query: 167 g 167
|
Sbjct: 20378021 g 20378021
>gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08J20 3', mRNA sequence
Length = 862
Score = 67.9 bits (34), Expect = 5e-009
Identities = 106/130 (81%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 645 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 586
Query: 63 ttagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtg 122
|||| || || |||||| | ||||| || |||||||| || |||||| ||||||| |
Sbjct: 585 ttaggacagagcgtgaagcagtagaacttgcaaatgatactcactatggtctagctggcg 526
Query: 123 ctgtaatttc 132
|||| |||||
Sbjct: 525 ctgtgatttc 516
Score = 58.0 bits (29), Expect = 5e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| ||||| || ||||| ||| | ||||| |
Sbjct: 427 gctccatggggagggaacaagcggagtggttttggccgggagctaggacagtggggcctc 368
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 367 gataactacttgagcgtgaagcaagtcac 339
>dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A13, full
insert sequence
Length = 1908
Score = 67.9 bits (34), Expect = 5e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 1270 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 1329
Query: 63 ttagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtg 122
|||| || || |||||| | ||||| || |||||||| || |||||| ||||||| |
Sbjct: 1330 ttaggacagagcgtgaagcagtagaacttgcaaatgatactcactatggtctagctggcg 1389
Query: 123 ctgtaatttc 132
|||| |||||
Sbjct: 1390 ctgtgatttc 1399
Score = 58.0 bits (29), Expect = 5e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| ||||| || ||||| ||| | ||||| |
Sbjct: 1488 gctccatggggagggaacaagcggagtggttttggccgggagctaggacagtggggcctc 1547
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 1548 gataactacttgagcgtgaagcaagtcac 1576
>ref|XM_472778.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1518
Score = 67.9 bits (34), Expect = 5e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 1157 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 1216
Query: 63 ttagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtg 122
|||| || || |||||| | ||||| || |||||||| || |||||| ||||||| |
Sbjct: 1217 ttaggacagagcgtgaagcagtagaacttgcaaatgatactcactatggtctagctggcg 1276
Query: 123 ctgtaatttc 132
|||| |||||
Sbjct: 1277 ctgtgatttc 1286
Score = 58.0 bits (29), Expect = 5e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| ||||| || ||||| ||| | ||||| |
Sbjct: 1375 gctccatggggagggaacaagcggagtggttttggccgggagctaggacagtggggcctc 1434
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 1435 gataactacttgagcgtgaagcaagtcac 1463
>dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene for betaine aldehyde
dehydrogenase, complete cds
Length = 4428
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 3701 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 3760
Query: 63 ttag 66
||||
Sbjct: 3761 ttag 3764
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 4345 gataactacttgagcgtgaagcaagtcac 4373
>gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009925, whole
genome shotgun sequence
Length = 23673
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 13610 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 13551
Query: 63 ttag 66
||||
Sbjct: 13550 ttag 13547
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 12966 gataactacttgagcgtgaagcaagtcac 12938
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 750896 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 750837
Query: 63 ttag 66
||||
Sbjct: 750836 ttag 750833
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 750252 gataactacttgagcgtgaagcaagtcac 750224
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 1039221 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 1039162
Query: 63 ttag 66
||||
Sbjct: 1039161 ttag 1039158
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 1038577 gataactacttgagcgtgaagcaagtcac 1038549
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 20183320 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 20183261
Query: 63 ttag 66
||||
Sbjct: 20183260 ttag 20183257
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 20182676 gataactacttgagcgtgaagcaagtcac 20182648
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
complete sequence
Length = 139418
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 37364 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 37305
Query: 63 ttag 66
||||
Sbjct: 37304 ttag 37301
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 36720 gataactacttgagcgtgaagcaagtcac 36692
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
||||||||||| |||||||| | ||||||||||| || || ||| | || ||||||||||
Sbjct: 23147172 gcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaat 23147113
Query: 63 ttag 66
||||
Sbjct: 23147112 ttag 23147109
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 281 gataactacctgagcgtcaagcaagtcac 309
||||||||| ||||||| |||||||||||
Sbjct: 23146528 gataactacttgagcgtgaagcaagtcac 23146500
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 784,894
Number of Sequences: 438736
Number of extensions: 784894
Number of successful extensions: 14585
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14321
Number of HSP's gapped (non-prelim): 261
length of query: 534
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 513
effective length of database: 2,791,206,460
effective search space: 1431888913980
effective search space used: 1431888913980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)