BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204472.2.1
(757 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 456 e-126
gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (j... 448 e-123
gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (j... 428 e-117
gb|AU183876.1|AU183876 AU183876 Rice cDNA from immature lea... 402 e-109
gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing... 400 e-109
dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA... 347 5e-093
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 311 3e-082
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 311 3e-082
gb|BP432965.1|BP432965 BP432965 Oryza sativa (japonica cult... 297 4e-078
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 278 4e-072
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 272 3e-070
gb|AU222632.1|AU222632 AU222632 Rice cDNA from immature lea... 264 6e-068
gb|AU222683.1|AU222683 AU222683 Rice shoot Oryza sativa (ja... 238 4e-060
gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (j... 236 1e-059
gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (j... 236 1e-059
gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (j... 236 1e-059
gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (j... 236 1e-059
dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA... 236 1e-059
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 232 2e-058
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 232 2e-058
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (j... 228 3e-057
gb|AU183250.1|AU183250 AU183250 Rice cDNA from immature lea... 218 3e-054
gb|AU183242.1|AU183242 AU183242 Rice cDNA from immature lea... 202 2e-049
dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA... 186 1e-044
ref|XM_473793.1| Oryza sativa (japonica cultivar-group), p... 186 1e-044
gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) c... 184 5e-044
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 184 5e-044
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 184 5e-044
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 184 5e-044
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 184 5e-044
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 184 5e-044
gb|AU225192.1|AU225192 AU225192 Oryza sativa Koshihikari pi... 180 7e-043
gb|C28350.1|C28350 C28350 Rice callus cDNA Oryza sativa (ja... 178 3e-042
gb|AY873214.1|AY873214 04ET3_387_C_072_000_001C08 Oryza sat... 170 7e-040
gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (... 151 6e-034
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 145 4e-032
gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (... 143 2e-031
gb|AU063923.1|AU063923 AU063923 Rice panicle at flowering s... 143 2e-031
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 143 2e-031
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 143 2e-031
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 143 2e-031
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 143 2e-031
gb|C25186.1|C25186 C25186 Rice shoot Oryza sativa (japonica... 131 6e-028
ref|XM_473792.1| Oryza sativa (japonica cultivar-group), p... 129 2e-027
gb|CB651562.1|CB651562 OSJNEb16J04.f OSJNEb Oryza sativa (j... 127 9e-027
gb|CB655114.1|CB655114 OSJNEc08D08.f OSJNEc Oryza sativa (j... 127 9e-027
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 123 1e-025
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
gb|D39971.1|D39971 RICS1669A Rice shoot Oryza sativa (japon... 119 2e-024
gb|C25181.1|C25181 C25181 Rice shoot Oryza sativa (japonica... 117 9e-024
gb|CB652674.1|CB652674 OSJNEc02O21.f OSJNEc Oryza sativa (j... 109 2e-021
gb|D40760.1|D40760 RICS2904A Rice shoot Oryza sativa (japon... 107 9e-021
gb|AU063993.1|AU063993 AU063993 Rice panicle at flowering s... 107 9e-021
gb|AU063995.2|AU063995 AU063995 Rice panicle at flowering s... 105 3e-020
gb|D40243.1|D40243 RICS2076A Rice shoot Oryza sativa (japon... 103 1e-019
gb|AU222867.1|AU222867 AU222867 Rice shoot Oryza sativa (ja... 103 1e-019
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 103 1e-019
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 103 1e-019
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 103 1e-019
dbj|AK111340.1| Oryza sativa (japonica cultivar-group) cDNA... 103 1e-019
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 103 1e-019
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 103 1e-019
ref|XM_478515.1| Oryza sativa (japonica cultivar-group), mRNA 103 1e-019
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 103 1e-019
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 103 1e-019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AU161551.1|AU161551 AU161551 Rice shoot Oryza sativa (ja... 101 5e-019
gb|CB650793.1|CB650793 OSJNEb15H04.r OSJNEb Oryza sativa (j... 101 5e-019
gb|AU063990.2|AU063990 AU063990 Rice panicle at flowering s... 101 5e-019
gb|AU222739.1|AU222739 AU222739 Rice shoot Oryza sativa (ja... 100 2e-018
gb|AQ578490.1|AQ578490 nbxb0093C13r CUGI Rice BAC Library O... 90 2e-015
dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
dbj|AK119538.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AC113930.2| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
ref|NM_187656.1| Oryza sativa (japonica cultivar-group), p... 90 2e-015
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 90 2e-015
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 90 2e-015
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 88 8e-015
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 88 8e-015
ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA 88 8e-015
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 88 8e-015
gb|D39510.1|D39510 RICS0891A Rice shoot Oryza sativa (japon... 82 5e-013
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 82 5e-013
gb|AACV01005666.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 82 5e-013
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japon... 80 2e-012
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 80 2e-012
gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (j... 80 2e-012
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 80 2e-012
gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression... 80 2e-012
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O1... 80 2e-012
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
gb|AACV01022039.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|NM_197613.1| Oryza sativa (japonica cultivar-group) put... 80 2e-012
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 80 2e-012
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 80 2e-012
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 80 2e-012
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 80 2e-012
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 80 2e-012
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 80 2e-012
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|AU164201.1|AU164201 AU164201 Rice panicle (longer than 1... 78 8e-012
dbj|AP004995.3| Oryza sativa (japonica cultivar-group) geno... 78 8e-012
gb|AACV01013383.1| Oryza sativa (japonica cultivar-group) c... 78 8e-012
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 78 8e-012
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 78 8e-012
gb|D21903.1|D21903 RICC10035A Rice callus Oryza sativa (jap... 76 3e-011
gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (ja... 76 3e-011
gb|D40632.1|D40632 RICS2719A Rice shoot Oryza sativa (japon... 74 1e-010
gb|C25353.1|C25353 C25353 Rice shoot Oryza sativa (japonica... 74 1e-010
gb|C27146.1|C27146 C27146 Rice callus cDNA Oryza sativa (ja... 74 1e-010
gb|D24203.1|D24203 RICR1522A Rice root Oryza sativa (japoni... 74 1e-010
dbj|AP004872.2| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP005398.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AACV01003896.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|D41088.1|D41088 RICS3357A Rice shoot Oryza sativa (japon... 72 5e-010
gb|D41305.1|D41305 RICS3696A Rice shoot Oryza sativa (japon... 72 5e-010
gb|CB648710.1|CB648710 OSJNEb12D18.f OSJNEb Oryza sativa (j... 72 5e-010
gb|CB652809.1|CB652809 OSJNEc03D09.r OSJNEc Oryza sativa (j... 72 5e-010
gb|CB653528.1|CB653528 OSJNEc04K08.r OSJNEc Oryza sativa (j... 72 5e-010
gb|CB661481.1|CB661481 OSJNEd04G16.f OSJNEd Oryza sativa (j... 72 5e-010
gb|CB662584.1|CB662584 OSJNEd06M04.f OSJNEd Oryza sativa (j... 72 5e-010
gb|CB662585.1|CB662585 OSJNEd06M04.r OSJNEd Oryza sativa (j... 72 5e-010
gb|CB668487.1|CB668487 OSJNEd16F20.f OSJNEd Oryza sativa (j... 72 5e-010
gb|CF308277.1|CF308277 ABF--02-A16.b1 ABF3-overexpressing t... 72 5e-010
dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA... 72 5e-010
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 72 5e-010
dbj|AP004784.3| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|AACV01013814.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japon... 70 2e-009
gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing... 70 2e-009
gb|D16085.1|D16085 RICC3021A Rice callus Oryza sativa (japo... 66 3e-008
gb|AACV01005750.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing... 62 5e-007
gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (j... 60 2e-006
dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (ja... 58 7e-006
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
gb|D40437.1|D40437 RICS2417A Rice shoot Oryza sativa (japon... 52 4e-004
dbj|AP004841.1| Oryza sativa (japonica cultivar-group) chro... 52 4e-004
dbj|AK061284.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK063216.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK073018.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AP004886.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbar... 52 4e-004
gb|AACV01003252.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01004200.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_463978.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|XM_465430.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 52 4e-004
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP005311.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP004816.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|D49161.1|D49161 RICS15861A Rice green shoot Oryza sativa... 50 0.002
gb|C91679.1|C91679 C91679 Rice panicle shorter than 3cm Ory... 50 0.002
gb|AU076005.1|AU076005 AU076005 Rice callus Oryza sativa (j... 50 0.002
gb|AU076006.1|AU076006 AU076006 Rice callus Oryza sativa (j... 50 0.002
gb|AU057309.2|AU057309 AU057309 Oryza sativa mature leaf Ni... 50 0.002
gb|CB642793.1|CB642793 OSJNEb03C15.f OSJNEb Oryza sativa (j... 50 0.002
dbj|AK101915.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK105864.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AACV01005220.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_467280.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.002
ref|XM_506903.1| PREDICTED Oryza sativa (japonica cultivar-... 50 0.002
dbj|AP005859.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|D24406.1|D24406 RICR1848A Rice root Oryza sativa (japoni... 48 0.007
gb|CB653527.1|CB653527 OSJNEc04K08.f OSJNEc Oryza sativa (j... 48 0.007
dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chro... 48 0.007
dbj|AK060495.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK122079.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AP005904.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01019905.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|XM_450915.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 48 0.007
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|D40588.1|D40588 RICS2663A Rice shoot Oryza sativa (japon... 46 0.027
gb|CB667671.1|CB667671 OSJNEd15B19.f OSJNEd Oryza sativa (j... 46 0.027
dbj|AP004682.1| Oryza sativa (japonica cultivar-group) chro... 46 0.027
dbj|AK071886.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
dbj|AK073730.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
dbj|AK104577.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
dbj|AP003510.3| Oryza sativa (japonica cultivar-group) geno... 46 0.027
dbj|AP006056.3| Oryza sativa (japonica cultivar-group) geno... 46 0.027
gb|AACV01005768.1| Oryza sativa (japonica cultivar-group) c... 46 0.027
gb|AACV01008282.1| Oryza sativa (japonica cultivar-group) c... 46 0.027
gb|AACV01013223.1| Oryza sativa (japonica cultivar-group) c... 46 0.027
ref|XM_470453.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.027
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 46 0.027
gb|AC134236.4| Oryza sativa (japonica cultivar-group) chrom... 46 0.027
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.027
gb|AC120506.5| Oryza sativa (japonica cultivar-group) chrom... 46 0.027
gb|AU068851.1|AU068851 AU068851 Rice callus Oryza sativa (j... 44 0.11
gb|AU184071.1|AU184071 AU184071 Rice root Oryza sativa (jap... 44 0.11
gb|DU168784.1|DU168784 UCDRdSpm768A_3.1 UCD RdSpm Rice Inse... 42 0.43
gb|DU168821.1|DU168821 UCDRdSpm767_3.1 UCD RdSpm Rice Inser... 42 0.43
gb|DU169063.1|DU169063 UCDRdSpm768_3.1 UCD RdSpm Rice Inser... 42 0.43
gb|D39675.1|D39675 RICS1234A Rice shoot Oryza sativa (japon... 42 0.43
gb|C25954.1|C25954 C25954 Rice callus cDNA Oryza sativa (ja... 42 0.43
gb|C72892.1|C72892 C72892 Rice panicle at flowering stage O... 42 0.43
gb|CB644397.1|CB644397 OSJNEb05J12.r OSJNEb Oryza sativa (j... 42 0.43
gb|CF303876.1|CF303876 ABF1--03-H11.g1 ABF3-overexpressing ... 42 0.43
gb|CF304955.1|CF304955 ABF1--06-G06.g1 ABF3-overexpressing ... 42 0.43
dbj|AK071679.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK099651.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 ... 42 0.43
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 42 0.43
gb|AACV01007852.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01022674.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
ref|XM_469614.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 42 0.43
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AC147811.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
insert sequence
Length = 1253
Score = 456 bits (230), Expect = e-126
Identities = 440/508 (86%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 689 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 630
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 629 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 570
Query: 168 agatgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcga 227
| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 569 atatgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgt 510
Query: 228 accagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgca 287
||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 509 accagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgca 450
Query: 288 gcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-cg 346
||||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||| ||
Sbjct: 449 gcgtgtacggctccccggtcacattccccaggaactcgaagtcgatctcatcatgcgtcg 390
Query: 347 ccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagc 406
| ||||||||||||| ||||||||||||||||||||||||||||||||| || || |||
Sbjct: 389 gc-ccctgcgacgacaagtagtaggcggtgacggtgccggcggagttgccggggacgagc 331
Query: 407 cgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaacccggagccg 466
||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||
Sbjct: 330 ttgagctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaaccctgagccg 271
Query: 467 gacgtgcggtccagcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccg 526
||||| | |||||||| |||||||||||| | || | || |||| |||||| || ||
Sbjct: 270 gacgtcctgtccagcgtgagcgtcagcagctggccatcctcgaggatcttgccacggcca 211
Query: 527 tcgccccacgtgatgtccagctcctggt 554
|||||||| |||||||| | ||||||||
Sbjct: 210 tcgccccaggtgatgtcgaactcctggt 183
>gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05G07 5', mRNA sequence
Length = 753
Score = 448 bits (226), Expect = e-123
Identities = 439/508 (86%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 680 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 621
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 620 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 561
Query: 168 agatgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcga 227
| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 atatgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgt 501
Query: 228 accagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgca 287
||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 500 accagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgca 441
Query: 288 gcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-cg 346
||||||| ||||| |||| ||| || |||||||||| |||||||||||| || |||| ||
Sbjct: 440 gcgtgtacggctccccggtcacattccccaggaactagaagtcgatctcatcatgcgtcg 381
Query: 347 ccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagc 406
| ||||||||||||| ||||||||||||||||||||||||||||||||| || || |||
Sbjct: 380 gc-ccctgcgacgacaagtagtaggcggtgacggtgccggcggagttgccggggacgagc 322
Query: 407 cgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaacccggagccg 466
||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||
Sbjct: 321 ttgagctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaaccctgagccg 262
Query: 467 gacgtgcggtccagcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccg 526
||||| | |||||||| |||||||||||| | || | || |||| |||||| || ||
Sbjct: 261 gacgtcctgtccagcgtgagcgtcagcagctggccatcctcgaggatcttgccacggcca 202
Query: 527 tcgccccacgtgatgtccagctcctggt 554
|||||||| |||||||| | ||||||||
Sbjct: 201 tcgccccaggtgatgtcgaactcctggt 174
>gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P16 5', mRNA sequence
Length = 669
Score = 428 bits (216), Expect = e-117
Identities = 421/487 (86%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 70 acangctggagtagagcngcatcngctggctctt-gggaacgcaaccaccttgctctcca 128
||| ||||||||||||| |||| ||||| |||| |||||||| | | |||| | |||||
Sbjct: 665 acaggctggagtagagcctcatcggctggttcttcgggaacgcgatccccttcccctcca 606
Query: 129 ggttgcngaagtccctgatgngcatgtcgtccaccatgaagatgacgtgcttggggttcc 188
|||| | |||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 605 ggttcctgaagtccctgatcggcatgtcgtccaccatgaatatgatgtgcttggggttcc 546
Query: 189 agaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgct 248
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct: 545 agaggatggagtaggtgtggaagtccttggtggggtcgtaccagaggcggaactgcatct 486
Query: 249 cccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccggaca 308
| ||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 485 cgcgctggccctgcccctgcgtgaacacgttggtgtgcagcgtgtacggctccccggtca 426
Query: 309 cgttgcccaggaactcgaagtcgatctcgtcgtgcg-cgccgccctgcgacgacaggtag 367
| || |||||||||| |||||||||||| || |||| || | ||||||||||||| ||||
Sbjct: 425 cattccccaggaactggaagtcgatctcatcatgcgtcggc-ccctgcgacgacaagtag 367
Query: 368 taggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttg 427
||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct: 366 taggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgatcttg 307
Query: 428 ccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagc 487
||| | |||||||||||| |||||||||||| ||||||||||| | |||||||| |||
Sbjct: 306 ccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgtgagc 247
Query: 488 gtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagc 547
||||||||| | || | || |||| |||||| || || |||||||| |||||||| | |
Sbjct: 246 gtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtcgaac 187
Query: 548 tcctggt 554
|||||||
Sbjct: 186 tcctggt 180
>gb|AU183876.1|AU183876 AU183876 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60049, mRNA sequence
Length = 637
Score = 402 bits (203), Expect = e-109
Identities = 378/433 (87%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 124 ctccaggttgcngaagtccctgatgngcatgtcgtccaccatgaag-atgacgtgcttgg 182
||||||||| | |||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct: 610 ctccaggttcctgaagtccctgatcggcatgtcgtccaccatgaaatatgatgtgcttgg 551
Query: 183 ggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaact 242
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 550 ggttccagaggatggagtaggtgtggaagtccttggtggggtcgtaccagaggcggaact 491
Query: 243 gctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgc 302
|| ||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct: 490 gcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagcgtgtacggctccc 431
Query: 303 cggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-cgccgccctgcgacgac 361
||| ||| || ||||||||||||||||||||||| || |||| || | ||||||||||||
Sbjct: 430 cggtcacattccccaggaactcgaagtcgatctcatcatgcgtcggc-ccctgcgacgac 372
Query: 362 aggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcg 421
| ||||||||||||||||||||||||||||||||| || || ||| ||||||||||||
Sbjct: 371 aagtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcg 312
Query: 422 atcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagc 481
||||||||| | |||||||||||| |||||||||||| ||||||||||| | |||||||
Sbjct: 311 atcttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagc 252
Query: 482 gacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatg 541
| |||||||||||| | || | || |||| |||||| || || |||||||| ||||||
Sbjct: 251 gtgagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatg 192
Query: 542 tccagctcctggt 554
|| | ||||||||
Sbjct: 191 tcgaactcctggt 179
>gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-C17, mRNA sequence
Length = 475
Score = 400 bits (202), Expect = e-109
Identities = 352/400 (88%), Gaps = 3/400 (0%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 405 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 346
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 345 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 286
Query: 168 agatgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcga 227
| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 atatgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgt 226
Query: 228 accagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgca 287
||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 225 accagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgca 166
Query: 288 gcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-cg 346
||||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||| ||
Sbjct: 165 gcgtgtacggctccccggtcacattccccaggaactcgaagtcgatctcatcatgcgtcg 106
Query: 347 ccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagc 406
| ||||||||||||| ||||||||||||||||||||||||||||||||| || || |||
Sbjct: 105 gc-ccctgcgacgacaagtagtaggcggtgacggtgccggcggagttgccggggacgagc 47
Query: 407 cgcagctgcatgtcgatcttgccgaacaggtactcgtgcc 446
||||||||||||||||||||| | |||||||||||||
Sbjct: 46 ttgagctgcatgtcgatcttgccgtagaggtactcgtgcc 7
>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full
insert sequence
Length = 566
Score = 347 bits (175), Expect = 5e-093
Identities = 327/375 (87%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 566 ggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtaccagaggcggaa 507
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||| ||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 506 ctgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagcgtgtacggctc 447
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-cgccgccctgcgacg 359
|||| ||| || ||||||||||||||||||||||| || |||| || | ||||||||||
Sbjct: 446 cccggtcacattccccaggaactcgaagtcgatctcatcatgcgtcggc-ccctgcgacg 388
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
||| ||||||||||||||||||||||||||||||||| || || ||| ||||||||||
Sbjct: 387 acaagtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgt 328
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||||||||||| | |||||||||||| |||||||||||| ||||||||||| | |||||
Sbjct: 327 cgatcttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtcca 268
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||| |||||||||||| | || | || |||| |||||| || || |||||||| ||||
Sbjct: 267 gcgtgagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtga 208
Query: 540 tgtccagctcctggt 554
|||| | ||||||||
Sbjct: 207 tgtcgaactcctggt 193
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
insert sequence
Length = 1208
Score = 311 bits (157), Expect = 3e-082
Identities = 274/313 (87%)
Strand = Plus / Minus
Query: 156 cgtccaccatgaagatgacgtgcttggggttccagaggatggagtaggtgtggaagtcgg 215
|||||||| ||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 574 cgtccaccgcgaatatgacgtgctgtgggttccagatgatggagtaggtgtggaaggact 515
Query: 216 cggtggggtcgaaccagaggcggaactgctgctcccgctgcccctgcccccgcgtgaaca 275
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 514 gggtggggtcgaaccagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaaca 455
Query: 276 cgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatct 335
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 454 cgttggtgtgcagcgtgtacggctcgccggtcacgttccccaggaactcgaagtcgatct 395
Query: 336 cgtcgtgcgcgccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgc 395
| ||||| | ||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 394 catcgtgggtcgaaccctgcgacgacaagtagaaggtggtgacggtgccggcggagttgc 335
Query: 396 ccggcaccagccgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactgga 455
| || || ||| | ||||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 334 cggggacgagcttgatctgcatgtcgatcttgccgaagaggtactcgctcttggactgga 275
Query: 456 acccggagccgga 468
|||| ||||||||
Sbjct: 274 acccagagccgga 262
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 682 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 625
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
insert sequence
Length = 1208
Score = 311 bits (157), Expect = 3e-082
Identities = 274/313 (87%)
Strand = Plus / Minus
Query: 156 cgtccaccatgaagatgacgtgcttggggttccagaggatggagtaggtgtggaagtcgg 215
|||||||| ||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 574 cgtccaccgcgaatatgacgtgctgtgggttccagatgatggagtaggtgtggaaggact 515
Query: 216 cggtggggtcgaaccagaggcggaactgctgctcccgctgcccctgcccccgcgtgaaca 275
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 514 gggtggggtcgaaccagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaaca 455
Query: 276 cgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatct 335
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 454 cgttggtgtgcagcgtgtacggctcgccggtcacgttccccaggaactcgaagtcgatct 395
Query: 336 cgtcgtgcgcgccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgc 395
| ||||| | ||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 394 catcgtgggtcgaaccctgcgacgacaagtagaaggtggtgacggtgccggcggagttgc 335
Query: 396 ccggcaccagccgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactgga 455
| || || ||| | ||||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 334 cggggacgagcttgatctgcatgtcgatcttgccgaagaggtactcgctcttggactgga 275
Query: 456 acccggagccgga 468
|||| ||||||||
Sbjct: 274 acccagagccgga 262
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 682 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 625
>gb|BP432965.1|BP432965 BP432965 Oryza sativa (japonica cultivar-group) whole plant
seedling Oryza sativa (japonica cultivar-group) cDNA
clone JRC0549, mRNA sequence
Length = 628
Score = 297 bits (150), Expect = 4e-078
Identities = 330/384 (85%), Gaps = 7/384 (1%)
Strand = Plus / Minus
Query: 175 gtgcttggggttccagaggatggagtaggtgtggaagtcggc-ggtggggtcgaaccaga 233
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 564 gtgcttggggttccagaggatggagtaggtgtggaagtcccttggtggggtcgtaccaga 505
Query: 234 ggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgt 293
| ||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 504 g-cggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagcgtgt 446
Query: 294 agggct-cgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgcgccg--c 350
| |||| | |||| ||| || |||||||||||||||||||||| || | ||| || |
Sbjct: 445 acggcttccccggtcacattccccaggaactcgaagtcgatct--tcatatgcgtcggcc 388
Query: 351 cctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgca 410
|||||||||||| ||||||||||||||||||||||||||||||||| || || ||| |
Sbjct: 387 cctgcgacgacaagtagtaggcggtgacggtgccggcggagttgccggggacgagcttga 328
Query: 411 gctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacg 470
|||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||
Sbjct: 327 gctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaaccctgagccggacg 268
Query: 471 tgcggtccagcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgc 530
| | |||||||| |||||||||||| | || | || |||| |||||| || || ||||
Sbjct: 267 tcctgtccagcgtgagcgtcagcagctggccatcctcgaggatcttgccacggccatcgc 208
Query: 531 cccacgtgatgtccagctcctggt 554
|||| |||||||| | ||||||||
Sbjct: 207 cccaggtgatgtcgaactcctggt 184
>gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5538, mRNA sequence
Length = 385
Score = 278 bits (140), Expect = 4e-072
Identities = 239/272 (87%)
Strand = Plus / Minus
Query: 156 cgtccaccatgaagatgacgtgcttggggttccagaggatggagtaggtgtggaagtcgg 215
|||||||| ||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 272 cgtccaccgcgaatatgacgtgctgtgggttccagatgatggagtaggtgtggaaggact 213
Query: 216 cggtggggtcgaaccagaggcggaactgctgctcccgctgcccctgcccccgcgtgaaca 275
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 212 gggtggggtcgaaccagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaaca 153
Query: 276 cgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatct 335
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 152 cgttggtgtgcagcgtgtacggctcgccggtcacgttccccaggaactcgaagtcgatct 93
Query: 336 cgtcgtgcgcgccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgc 395
| ||||| | ||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 92 catcgtgggtcgaaccctgcgacgacaagtagaaggtggtgacggtgccggcggagttgc 33
Query: 396 ccggcaccagccgcagctgcatgtcgatcttg 427
| || || ||| | ||||||||||||||||
Sbjct: 32 cggggacgagcttgatctgcatgtcgatcttg 1
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 380 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 323
>gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5527, mRNA sequence
Length = 367
Score = 272 bits (137), Expect = 3e-070
Identities = 215/241 (89%)
Strand = Plus / Minus
Query: 156 cgtccaccatgaagatgacgtgcttggggttccagaggatggagtaggtgtggaagtcgg 215
|||||||| ||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 255 cgtccaccgcgaatatgacgtgctgtgggttccagatgatggagtaggtgtggaaggact 196
Query: 216 cggtggggtcgaaccagaggcggaactgctgctcccgctgcccctgcccccgcgtgaaca 275
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 195 gggtggggtcgaaccagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaaca 136
Query: 276 cgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatct 335
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 135 cgttggtgtgcagcgtgtacggctcgccggtcacgttccccaggaactcgaagtcgatct 76
Query: 336 cgtcgtgcgcgccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgc 395
| ||||| | ||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 75 catcgtgggtcgaaccctgcgacgacaagtagaaggtggtgacggtgccggcggagttgc 16
Query: 396 c 396
|
Sbjct: 15 c 15
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 363 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 306
>gb|AU222632.1|AU222632 AU222632 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60267, mRNA sequence
Length = 486
Score = 264 bits (133), Expect = 6e-068
Identities = 264/305 (86%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 251 cgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccggacacg 310
||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 481 cgctggccctgcccctgcgtgaacacgttggtgtgcagcgtgtacggctccccggtcaca 422
Query: 311 ttgcccaggaactcgaagtcgatctcgtcgtgcg-cgccgccctgcgacgacaggtagta 369
|| ||||||||||||||||||||||| || |||| || | ||||||||||||| ||||||
Sbjct: 421 ttccccaggaactcgaagtcgatctcatcatgcgtcggc-ccctgcgacgacaagtagta 363
Query: 370 ggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgcc 429
||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||
Sbjct: 362 ggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgatcttgcc 303
Query: 430 gaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgt 489
| | |||||||||||| |||||||||||| ||||||||||| | |||||||| |||||
Sbjct: 302 gtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgtgagcgt 243
Query: 490 cagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctc 549
||||||| | || | || |||| |||||| || || |||||||| |||||||| | |||
Sbjct: 242 cagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtcgaactc 183
Query: 550 ctggt 554
|||||
Sbjct: 182 ctggt 178
>gb|AU222683.1|AU222683 AU222683 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0011, mRNA sequence
Length = 290
Score = 238 bits (120), Expect = 4e-060
Identities = 242/280 (86%), Gaps = 3/280 (1%)
Strand = Plus / Minus
Query: 219 tggggtcgaaccagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgt 278
|||||||| |||| ||||||| |||| ||| ||||| ||||||||| |||| |||||||
Sbjct: 281 tggggtcgtaccanaggcgganctgcatctcgcgctggccctgcccctgcgtnaacacgt 222
Query: 279 tggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgt 338
|||||| ||||||||| ||||| |||| ||| || |||||||||| |||||||||||| |
Sbjct: 221 tggtgtacagcgtgtacggctccccggtcacattccccaggaactngaagtcgatctcat 162
Query: 339 cgtgcg-cgccgccctgcgacgacaggtagtaggcggtgacgg-tgccggcggagttgcc 396
| |||| || | ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 161 catgcgtcggc-ccctgcgacgacaagtagtaggcggtgacgggtgccggcggagttgcc 103
Query: 397 cggcaccagccgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaa 456
|| || ||| ||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 102 ggggacgagcttgagctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaa 43
Query: 457 cccggagccggacgtgcggtccagcgacagcgtcagcagc 496
||| ||||||||||| | |||||||| ||||||||||||
Sbjct: 42 ccctgagccggacgtcctgtccagcgtgagcgtcagcagc 3
>gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11H13 5', mRNA sequence
Length = 701
Score = 236 bits (119), Expect = 1e-059
Identities = 313/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 535 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 476
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 475 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 416
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 415 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 357
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 356 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 297
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 296 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 237
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 236 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 177
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 176 tgtccacgtcctggt 162
>gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15H04 5', mRNA sequence
Length = 787
Score = 236 bits (119), Expect = 1e-059
Identities = 313/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 535 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 476
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 475 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 416
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 415 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 357
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 356 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 297
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 296 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 237
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 236 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 177
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 176 tgtccacgtcctggt 162
>gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09H12 5', mRNA sequence
Length = 782
Score = 236 bits (119), Expect = 1e-059
Identities = 313/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 535 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 476
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 475 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 416
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 415 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 357
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 356 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 297
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 296 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 237
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 236 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 177
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 176 tgtccacgtcctggt 162
>gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15H06 5', mRNA sequence
Length = 695
Score = 236 bits (119), Expect = 1e-059
Identities = 313/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 529 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 470
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 469 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 410
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 409 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 351
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 350 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 291
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 290 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 231
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 230 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 171
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 170 tgtccacgtcctggt 156
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full
insert sequence
Length = 1101
Score = 236 bits (119), Expect = 1e-059
Identities = 313/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 547 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 488
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 487 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 428
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 427 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 369
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 368 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 309
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 308 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 249
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 248 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 189
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 188 tgtccacgtcctggt 174
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 6215631 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 6215572
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 6215571 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 6215512
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 6215511 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 6215459
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 6239065 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 6239124
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 6239125 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 6239184
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 6239185 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 6239231
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6220359 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 6220300
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 6220299 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 6220241
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 6220240 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 6220198
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 6239334 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 6239393
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 6239394 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 6239453
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 6239454 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 6239513
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 6239514 gaactcctggt 6239524
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 6227356 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 6227297
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 6227296 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 6227237
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 6227236 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 6227178
Query: 360 acag 363
||||
Sbjct: 6227177 acag 6227174
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 6227071 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 6227012
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 6227011 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 6226952
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 6226951 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 6226893
Score = 101 bits (51), Expect = 5e-019
Identities = 103/121 (85%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 6238853 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 6238912
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 6238913 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 6238972
Query: 168 a 168
|
Sbjct: 6238973 a 6238973
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 6215303 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 6215244
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 6215243 cttgccgaagaggtactcgctcttggactggaacccagagccgga 6215199
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 6215875 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 6215818
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 150712 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 150653
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 150652 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 150593
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 150592 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 150540
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 155440 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 155381
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 155380 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 155322
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 155321 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 155279
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 162437 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 162378
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 162377 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 162318
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 162317 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 162259
Query: 360 acag 363
||||
Sbjct: 162258 acag 162255
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 162152 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 162093
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 162092 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 162033
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 162032 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 161974
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 150384 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 150325
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 150324 cttgccgaagaggtactcgctcttggactggaacccagagccgga 150280
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 150956 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 150899
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 57921 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 57862
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 57861 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 57802
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 57801 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 57749
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 81355 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 81414
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 81415 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 81474
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 81475 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 81521
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 62649 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 62590
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 62589 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 62531
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 62530 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 62488
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 81624 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 81683
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 81684 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 81743
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 81744 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 81803
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 81804 gaactcctggt 81814
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 69646 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 69587
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 69586 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 69527
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 69526 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 69468
Query: 360 acag 363
||||
Sbjct: 69467 acag 69464
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 69361 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 69302
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 69301 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 69242
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 69241 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 69183
Score = 101 bits (51), Expect = 5e-019
Identities = 103/121 (85%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 81143 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 81202
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 81203 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 81262
Query: 168 a 168
|
Sbjct: 81263 a 81263
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 57593 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 57534
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 57533 cttgccgaagaggtactcgctcttggactggaacccagagccgga 57489
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 58165 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 58108
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 46187 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 46246
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 46247 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 46306
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 46307 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 46359
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 22748 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 22689
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 22688 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 22629
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 22628 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 22582
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41459 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 41518
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 41519 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 41577
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 41578 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 41620
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 22479 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 22420
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 22419 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 22360
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 22359 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 22300
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 22299 gaactcctggt 22289
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 34462 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 34521
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 34522 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 34581
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 34582 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 34640
Query: 360 acag 363
||||
Sbjct: 34641 acag 34644
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 34747 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 34806
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 34807 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 34866
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 34867 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 34925
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 46515 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 46574
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 46575 cttgccgaagaggtactcgctcttggactggaacccagagccgga 46619
Score = 81.8 bits (41), Expect = 5e-013
Identities = 98/116 (84%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 55 agtcgtccgcgttcaacangctggagtagagcngcatcng-ctggctctt-gggaacgca 112
||||||| |||||| ||| ||||||||||||| |||| | |||| |||| ||||||||
Sbjct: 22955 agtcgtcggcgttccacaggctggagtagagcctcatcgggctggttcttcgggaacgcg 22896
Query: 113 accaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatgaa 168
| | |||| | ||||||||| | |||||||||||| |||||||||||||||||||
Sbjct: 22895 atccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatgaa 22840
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 45943 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 46000
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 10128464 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 10128405
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 10128404 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 10128345
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 10128344 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 10128292
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 10151903 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 10151962
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 10151963 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 10152022
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 10152023 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 10152069
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 10133192 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 10133133
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 10133132 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 10133074
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 10133073 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 10133031
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 10152172 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 10152231
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 10152232 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 10152291
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 10152292 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 10152351
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 10152352 gaactcctggt 10152362
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 10140189 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 10140130
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 10140129 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 10140070
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 10140069 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 10140011
Query: 360 acag 363
||||
Sbjct: 10140010 acag 10140007
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 10139904 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 10139845
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 10139844 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 10139785
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 10139784 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 10139726
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 10128136 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 10128077
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 10128076 cttgccgaagaggtactcgctcttggactggaacccagagccgga 10128032
Score = 81.8 bits (41), Expect = 5e-013
Identities = 98/116 (84%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 55 agtcgtccgcgttcaacangctggagtagagcngcatcng-ctggctctt-gggaacgca 112
||||||| |||||| ||| ||||||||||||| |||| | |||| |||| ||||||||
Sbjct: 10151696 agtcgtcggcgttccacaggctggagtagagcctcatcgggctggttcttcgggaacgcg 10151755
Query: 113 accaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatgaa 168
| | |||| | ||||||||| | |||||||||||| |||||||||||||||||||
Sbjct: 10151756 atccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatgaa 10151811
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 10128708 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 10128651
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 27827201 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 27827142
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 27827141 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 27827082
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 27827081 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 27827029
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 27850640 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 27850699
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 27850700 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 27850759
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 27850760 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 27850806
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 27831929 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 27831870
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 27831869 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 27831811
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 27831810 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 27831768
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 27850909 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 27850968
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 27850969 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 27851028
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 27851029 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 27851088
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 27851089 gaactcctggt 27851099
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 27838926 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 27838867
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 27838866 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 27838807
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 27838806 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 27838748
Query: 360 acag 363
||||
Sbjct: 27838747 acag 27838744
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 27838641 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 27838582
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 27838581 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 27838522
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 27838521 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 27838463
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 27826873 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 27826814
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 27826813 cttgccgaagaggtactcgctcttggactggaacccagagccgga 27826769
Score = 81.8 bits (41), Expect = 5e-013
Identities = 98/116 (84%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 55 agtcgtccgcgttcaacangctggagtagagcngcatcng-ctggctctt-gggaacgca 112
||||||| |||||| ||| ||||||||||||| |||| | |||| |||| ||||||||
Sbjct: 27850433 agtcgtcggcgttccacaggctggagtagagcctcatcgggctggttcttcgggaacgcg 27850492
Query: 113 accaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatgaa 168
| | |||| | ||||||||| | |||||||||||| |||||||||||||||||||
Sbjct: 27850493 atccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatgaa 27850548
Score = 77.8 bits (39), Expect = 8e-012
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcgga 239
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 7141120 ggggttccagaggatggagtagtcatggaagtcggcagcggggtcgaaccagaggcgga 7141178
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||| ||||| |||| ||||| || || ||||||||||||||||| |||||||
Sbjct: 12967312 ggggttccagaagatggtgtagttgtggtagccgtcggtggggtcgaaccaggggcggaa 12967253
Query: 241 ctgc 244
||||
Sbjct: 12967252 ctgc 12967249
Score = 65.9 bits (33), Expect = 3e-008
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcgtg 342
|||||||||||||||||||||||||||||||||
Sbjct: 12967183 gttgcccaggaactcgaagtcgatctcgtcgtg 12967151
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 27827445 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 27827388
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgccc 397
|||||||| ||||||||||||||| |||||||||
Sbjct: 12967024 gtagtaggtggtgacggtgccggccgagttgccc 12966991
Score = 46.1 bits (23), Expect = 0.027
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcg 340
||||||||||||||||||||| | |||||||
Sbjct: 4794460 gttgcccaggaactcgaagtccagctcgtcg 4794490
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 232 bits (117), Expect = 2e-058
Identities = 159/173 (91%)
Strand = Plus / Minus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 28750146 atgacgtgctgtgggttccagatgatggagtaggtgtggaaggactgggtggggtcgaac 28750087
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 28750086 cagaggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagc 28750027
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 28750026 gtgtacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 28749974
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 28773580 atgatgtgcttggggttccagaggatggagtaggtgtggaagtccttggtggggtcgtac 28773639
Query: 230 cagaggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagc 289
||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 28773640 cagaggcggaactgcatctcgcgctggccctgcccctgcgtgaacacgttggtgtgcagc 28773699
Query: 290 gtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||| ||||| |||| ||| || |||||||||||||||||||||||
Sbjct: 28773700 gtgtacggctccccggtcacattccccaggaactcgaagtcgatctc 28773746
Score = 165 bits (83), Expect = 4e-038
Identities = 145/163 (88%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 28754874 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagagcacgaac 28754815
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 28754814 tgctgctcacgctcgcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 28754756
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 28754755 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 28754713
Score = 157 bits (79), Expect = 1e-035
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct: 28773849 gtagtaggcggtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgat 28773908
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtccagcga 483
||||||| | |||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct: 28773909 cttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgt 28773968
Query: 484 cagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtc 543
|||||||||||| | || | || |||| |||||| || || |||||||| ||||||||
Sbjct: 28773969 gagcgtcagcagctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtc 28774028
Query: 544 cagctcctggt 554
| ||||||||
Sbjct: 28774029 gaactcctggt 28774039
Score = 127 bits (64), Expect = 9e-027
Identities = 156/184 (84%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 28761871 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 28761812
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 28761811 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 28761752
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 28761751 gccgctcgcgttccccaggaactcgaagtcgatctcgtcgtgctgcgac-ccctgcgacg 28761693
Query: 360 acag 363
||||
Sbjct: 28761692 acag 28761689
Score = 109 bits (55), Expect = 2e-021
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 376 gacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacag 435
||||||||||||||||||||| || || ||| | ||||||||||| |||| ||||
Sbjct: 28761586 gacggtgccggcggagttgccggggacgagcttgatctgcatgtcgaagcggccgtacag 28761527
Query: 436 gtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcag 495
||||| || | ||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct: 28761526 gtactggttcttggactggaagccggagccggacgacctgtccagcgacagcgtcaggag 28761467
Query: 496 ccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
| | |||||| | |||| |||||| || ||||||||||| |||||||||| |||||||
Sbjct: 28761466 ctggccgttgccgaggatcttgccgcggccgtcgccccaagtgatgtccacgtcctggt 28761408
Score = 101 bits (51), Expect = 5e-019
Identities = 103/121 (85%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctctt-ggga 107
||| ||||||||| |||||| ||| ||||||||||||| |||| ||||| |||| ||||
Sbjct: 28773368 tcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctggttcttcggga 28773427
Query: 108 acgcaaccaccttgctctccaggttgcngaagtccctgatgngcatgtcgtccaccatga 167
|||| | | |||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 28773428 acgcgatccccttcccctccaggttcctgaagtccctgatcggcatgtcgtccaccatga 28773487
Query: 168 a 168
|
Sbjct: 28773488 a 28773488
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 28749818 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 28749759
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 28749758 cttgccgaagaggtactcgctcttggactggaacccagagccgga 28749714
Score = 77.8 bits (39), Expect = 8e-012
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcgga 239
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 7156064 ggggttccagaggatggagtagtcatggaagtcggcagcggggtcgaaccagaggcgga 7156122
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||| ||||| |||| ||||| || || ||||||||||||||||| |||||||
Sbjct: 13230563 ggggttccagaagatggtgtagttgtggtagccgtcggtggggtcgaaccaggggcggaa 13230504
Query: 241 ctgc 244
||||
Sbjct: 13230503 ctgc 13230500
Score = 65.9 bits (33), Expect = 3e-008
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcgtg 342
|||||||||||||||||||||||||||||||||
Sbjct: 13230434 gttgcccaggaactcgaagtcgatctcgtcgtg 13230402
Score = 52.0 bits (26), Expect = 4e-004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 49 tcgnccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||| |||||||||||||||| ||| ||| | ||| | | ||||| |||||||||||||
Sbjct: 28750390 tcgcccagtcgtccgcgttccacaggctcgcgtacacccgcatcggctggctcttggg 28750333
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgccc 397
|||||||| ||||||||||||||| |||||||||
Sbjct: 13230275 gtagtaggtggtgacggtgccggccgagttgccc 13230242
Score = 46.1 bits (23), Expect = 0.027
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcg 340
||||||||||||||||||||| | |||||||
Sbjct: 4973825 gttgcccaggaactcgaagtccagctcgtcg 4973855
Score = 46.1 bits (23), Expect = 0.027
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcg 340
||||||||||||||||||||| | |||||||
Sbjct: 4958713 gttgcccaggaactcgaagtccagctcgtcg 4958743
>gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09P24 5', mRNA sequence
Length = 817
Score = 228 bits (115), Expect = 3e-057
Identities = 312/375 (83%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
|||||||||||||| |||||| ||||||||||| ||| ||||||||||| | ||||||
Sbjct: 528 ggggttccagaggacggagtaagtgtggaagtccttggtagggtcgaaccacatgcggaa 469
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
||||||||| || || | |||| | || ||||||||||||||| |||||| |||||
Sbjct: 468 ctgctgctcgcggccgcctttcccctggctgtacacgttggtgtgcaccgtgtacggctc 409
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc-gcgccgccctgcgacg 359
|||| | |||| |||||||||| ||||||||||||||||||| ||| | ||||||||||
Sbjct: 408 gccgctcgcgttccccaggaactagaagtcgatctcgtcgtgctgcgac-ccctgcgacg 350
Query: 360 acaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgt 419
|||||||| ||| || ||||||||||||||||||||| || || ||| | ||||||||
Sbjct: 349 acaggtagaaggtggcgacggtgccggcggagttgccggggacgagcttgatctgcatgt 290
Query: 420 cgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtcca 479
||| |||| ||||||||| || | ||||||||| ||||||||||||| | |||||
Sbjct: 289 cgaagcggccgtacaggtactggttcttggactggaagccggagccggacgacctgtcca 230
Query: 480 gcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtga 539
||||||||||||| ||| | |||||| | |||| |||||| || ||||||||||| ||||
Sbjct: 229 gcgacagcgtcaggagctggccgttgccgaggatcttgccgcggccgtcgccccaagtga 170
Query: 540 tgtccagctcctggt 554
|||||| |||||||
Sbjct: 169 tgtccacgtcctggt 155
>gb|AU183250.1|AU183250 AU183250 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60366, mRNA sequence
Length = 450
Score = 218 bits (110), Expect = 3e-054
Identities = 235/274 (85%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 282 tgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgt 341
||||||||||||| ||||| |||| ||| || ||||||||||||||||||||||| || |
Sbjct: 450 tgtgcagcgtgtacggctccccggtcacattccccaggaactcgaagtcgatctcatcat 391
Query: 342 gcg-cgccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggc 400
||| || | ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 390 gcgtcggc-ccctgcgacgacaagtagtaggcggtgacggtgccggcggagttgccgggg 332
Query: 401 accagccgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaacccg 460
|| ||| ||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 331 acgagcttgagctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaaccct 272
Query: 461 gagccggacgtgcggtccagcgacagcgtcagcagccgcccgttgtcaaggaccttgccc 520
||||||||||| | |||||||| |||||||||||| | || | || |||| ||||||
Sbjct: 271 gagccggacgtcctgtccagcgtgagcgtcagcagctggccatcctcgaggatcttgcca 212
Query: 521 cgcccgtcgccccacgtgatgtccagctcctggt 554
|| || |||||||| |||||||| | ||||||||
Sbjct: 211 cggccatcgccccaggtgatgtcgaactcctggt 178
>gb|AU183242.1|AU183242 AU183242 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60195, mRNA sequence
Length = 447
Score = 202 bits (102), Expect = 2e-049
Identities = 229/269 (85%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 287 agcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcg-c 345
|||||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||| |
Sbjct: 447 agcgtgtacggctccccggtcacattccccaggaactcgaagtcgatctcatcatgcgtc 388
Query: 346 gccgccctgcgacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccag 405
| | ||||||||||||| ||||||| ||||||||||||||||||||||||| || || ||
Sbjct: 387 ggc-ccctgcgacgacaagtagtagncggtgacggtgccggcggagttgccggggacgag 329
Query: 406 ccgcagctgcatgtcgatcttgccgaacaggtactcgtgccgggactggaacccggagcc 465
| ||||||||||||||||||||| | |||||||||||| |||||||||||| |||||
Sbjct: 328 cttgagctgcatgtcgatcttgccgtagaggtactcgtgcttggactggaaccctgagcc 269
Query: 466 ggacgtgcggtccagcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgccc 525
|||||| | |||||||| |||||||||||| | || | || |||| |||||| || ||
Sbjct: 268 ggacgtcctgtccagcgtgagcgtcagcagctggccatcctcgaggatcttgccacggcc 209
Query: 526 gtcgccccacgtgatgtccagctcctggt 554
|||||||| |||||||| | ||||||||
Sbjct: 208 atcgccccaggtgatgtcgaactcctggt 180
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full
insert sequence
Length = 1234
Score = 186 bits (94), Expect = 1e-044
Identities = 178/206 (86%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 566 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 507
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 506 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 447
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgcgccgccctgcgacga 360
|||| |||||| |||||||||||||||||||||||||||||||| | |||| ||| |
Sbjct: 446 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgcatctccctccgatgt 387
Query: 361 caggtagtaggcggtgacggtgccgg 386
||||||| ||| || ||| |||||||
Sbjct: 386 caggtagaaggtggcgaccgtgccgg 361
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 966
Score = 186 bits (94), Expect = 1e-044
Identities = 178/206 (86%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 498 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 439
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 438 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 379
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgcgccgccctgcgacga 360
|||| |||||| |||||||||||||||||||||||||||||||| | |||| ||| |
Sbjct: 378 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgcatctccctccgatgt 319
Query: 361 caggtagtaggcggtgacggtgccgg 386
||||||| ||| || ||| |||||||
Sbjct: 318 caggtagaaggtggcgaccgtgccgg 293
>gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010438, whole
genome shotgun sequence
Length = 16114
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Minus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 6435 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 6376
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 6375 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 6316
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 6315 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 6271
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9664 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 9723
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 9724 ggaactgctgctc 9736
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 9764 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 9823
Query: 337 gtcgtg 342
||||||
Sbjct: 9824 gtcgtg 9829
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 6013 ggactggaacccggagccgga 5993
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 453351 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 453410
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 453411 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 453470
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 453471 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 453515
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 450123 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 450064
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 450063 ggaactgctgctc 450051
Score = 103 bits (52), Expect = 1e-019
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 413378 tccagacgatggagtaggtgtggaagtcggtggtggggtcgaaccagaggtggaactgct 413437
Query: 246 gctc 249
||||
Sbjct: 413438 gctc 413441
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 450023 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 449964
Query: 337 gtcgtg 342
||||||
Sbjct: 449963 gtcgtg 449958
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 308 acgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||||||||||||||| | |||||||||||||||
Sbjct: 404896 acgttgcccaggaactccaggtcgatctcgtcgtg 404930
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 275 acgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactc 324
|||||||||||||||||||| |||| |||| |||||||| ||||||||
Sbjct: 413467 acgttggtgtgcagcgtgtacggctgcccggtgacgttgccgaggaactc 413516
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 453773 ggactggaacccggagccgga 453793
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 456 acccggagccggacgtgcggtccagcgacagcg 488
||||||||||||| ||| |||| ||||||||||
Sbjct: 413750 acccggagccggaggtgtggtcgagcgacagcg 413782
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||||| || |||||||||||||||
Sbjct: 404770 gggttccagatgacggagtaggtgtggaa 404798
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 8272882 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 8272941
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 8272942 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 8273001
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 8273002 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 8273046
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8269653 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 8269594
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 8269593 ggaactgctgctc 8269581
Score = 103 bits (52), Expect = 1e-019
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 8235467 tccagacgatggagtaggtgtggaagtcggtggtggggtcgaaccagaggtggaactgct 8235526
Query: 246 gctc 249
||||
Sbjct: 8235527 gctc 8235530
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 180 tggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaacca 231
||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 9886580 tggggttccagagcacggcgtaggtgtggaagtcggcggtggggtcgaacca 9886529
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 8269553 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 8269494
Query: 337 gtcgtg 342
||||||
Sbjct: 8269493 gtcgtg 8269488
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 296 ggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 9886464 ggctcgccggtgacgttgcccaggaactcgaagtcgaactcgttgtgc 9886417
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 308 acgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||||||||||||||| | |||||||||||||||
Sbjct: 8226893 acgttgcccaggaactccaggtcgatctcgtcgtg 8226927
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 275 acgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactc 324
|||||||||||||||||||| |||| |||| |||||||| ||||||||
Sbjct: 8235556 acgttggtgtgcagcgtgtacggctgcccggtgacgttgccgaggaactc 8235605
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 8273304 ggactggaacccggagccgga 8273324
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 456 acccggagccggacgtgcggtccagcgacagcg 488
||||||||||||| ||| |||| ||||||||||
Sbjct: 8235839 acccggagccggaggtgtggtcgagcgacagcg 8235871
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||||| || |||||||||||||||
Sbjct: 8226767 gggttccagatgacggagtaggtgtggaa 8226795
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 27416981 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 27417040
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 27417041 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 27417100
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 27417101 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 27417145
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27413752 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 27413693
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 27413692 ggaactgctgctc 27413680
Score = 103 bits (52), Expect = 1e-019
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 27379566 tccagacgatggagtaggtgtggaagtcggtggtggggtcgaaccagaggtggaactgct 27379625
Query: 246 gctc 249
||||
Sbjct: 27379626 gctc 27379629
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 180 tggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaacca 231
||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 29030679 tggggttccagagcacggcgtaggtgtggaagtcggcggtggggtcgaacca 29030628
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 27413652 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 27413593
Query: 337 gtcgtg 342
||||||
Sbjct: 27413592 gtcgtg 27413587
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 296 ggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 29030563 ggctcgccggtgacgttgcccaggaactcgaagtcgaactcgttgtgc 29030516
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 308 acgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||||||||||||||| | |||||||||||||||
Sbjct: 27370992 acgttgcccaggaactccaggtcgatctcgtcgtg 27371026
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 275 acgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactc 324
|||||||||||||||||||| |||| |||| |||||||| ||||||||
Sbjct: 27379655 acgttggtgtgcagcgtgtacggctgcccggtgacgttgccgaggaactc 27379704
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 27417403 ggactggaacccggagccgga 27417423
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 456 acccggagccggacgtgcggtccagcgacagcg 488
||||||||||||| ||| |||| ||||||||||
Sbjct: 27379938 acccggagccggaggtgtggtcgagcgacagcg 27379970
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||||| || |||||||||||||||
Sbjct: 27370866 gggttccagatgacggagtaggtgtggaa 27370894
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
complete sequence
Length = 129037
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 32552 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 32611
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 32612 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 32671
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 32672 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 32716
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 29324 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 29265
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 29264 ggaactgctgctc 29252
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 29224 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 29165
Query: 337 gtcgtg 342
||||||
Sbjct: 29164 gtcgtg 29159
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 32974 ggactggaacccggagccgga 32994
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 184 bits (93), Expect = 5e-044
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 181 ggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 30556844 ggggttccagaggatggtgtagttgtggaagtcggcggtggggtcgaaccagaggtagaa 30556903
Query: 241 ctgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||||||| | ||| |||| ||| ||||||||||||||||| | ||| |||||
Sbjct: 30556904 ctgctgctcccggttccctctcccctgcgcgaacacgttggtgtgcatcacgtacggctc 30556963
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgcgc 345
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 30556964 gccgctcacgttccccaggaactcgaagtcgatctcgtcgtgcgc 30557008
Score = 129 bits (65), Expect = 2e-027
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 177 gcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggc 236
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 30553616 gcttggggttccagacgatggagtaggtgtggtagtcggcggtggggtcgaaccagaggc 30553557
Query: 237 ggaactgctgctc 249
|||||||||||||
Sbjct: 30553556 ggaactgctgctc 30553544
Score = 103 bits (52), Expect = 1e-019
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 30516868 tccagacgatggagtaggtgtggaagtcggtggtggggtcgaaccagaggtggaactgct 30516927
Query: 246 gctc 249
||||
Sbjct: 30516928 gctc 30516931
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 180 tggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaacca 231
||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 32180583 tggggttccagagcacggcgtaggtgtggaagtcggcggtggggtcgaacca 32180532
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
||||||||| |||||||| |||||||||| |||||||| |||||||| | |||||||||
Sbjct: 30553516 gttggtgtggagcgtgtatggctcgccggtgacgttgccgaggaactccaggtcgatctc 30553457
Query: 337 gtcgtg 342
||||||
Sbjct: 30553456 gtcgtg 30553451
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 296 ggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 32180467 ggctcgccggtgacgttgcccaggaactcgaagtcgaactcgttgtgc 32180420
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 308 acgttgcccaggaactcgaagtcgatctcgtcgtg 342
||||||||||||||||| | |||||||||||||||
Sbjct: 30508386 acgttgcccaggaactccaggtcgatctcgtcgtg 30508420
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 275 acgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactc 324
|||||||||||||||||||| |||| |||| |||||||| ||||||||
Sbjct: 30516957 acgttggtgtgcagcgtgtacggctgcccggtgacgttgccgaggaactc 30517006
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 448 ggactggaacccggagccgga 468
|||||||||||||||||||||
Sbjct: 30557266 ggactggaacccggagccgga 30557286
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 456 acccggagccggacgtgcggtccagcgacagcg 488
||||||||||||| ||| |||| ||||||||||
Sbjct: 30517240 acccggagccggaggtgtggtcgagcgacagcg 30517272
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||||| || |||||||||||||||
Sbjct: 30508260 gggttccagatgacggagtaggtgtggaa 30508288
>gb|AU225192.1|AU225192 AU225192 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0129, mRNA sequence
Length = 426
Score = 180 bits (91), Expect = 7e-043
Identities = 201/235 (85%), Gaps = 2/235 (0%)
Strand = Plus / Minus
Query: 321 actcgaagtcgatctcgtcgtgcg-cgccgccctgcgacgacaggtagtaggcggtgacg 379
|||||||||||||||| || |||| || | ||||||||||||| ||||||||||||||||
Sbjct: 426 actcgaagtcgatctcatcatgcgtcggc-ccctgcgacgacaagtagtaggcggtgacg 368
Query: 380 gtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaacaggtac 439
||||||||||||||||| || || ||| ||||||||||||||||||||| | ||||||
Sbjct: 367 gtgccggcggagttgccggggacgagcttgagctgcatgtcgatcttgccgtagaggtac 308
Query: 440 tcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagcagccgc 499
|||||| |||||||||||| ||||||||||| | |||||||| |||||||||||| |
Sbjct: 307 tcgtgcttggactggaaccctgagccggacgtcctgtccagcgtgagcgtcagcagctgg 248
Query: 500 ccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctggt 554
|| | || |||| |||||| || || |||||||| |||||||| | ||||||||
Sbjct: 247 ccatcctcgaggatcttgccacggccatcgccccaggtgatgtcgaactcctggt 193
>gb|C28350.1|C28350 C28350 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60796_1A, mRNA sequence
Length = 429
Score = 178 bits (90), Expect = 3e-042
Identities = 204/241 (84%), Gaps = 1/241 (0%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcgcgccgccctgcgacgacaggtagtaggcg 373
|||||||||||||| |||||||| || |||| | ||||| |||| ||| ||||||||||
Sbjct: 407 cccaggaactcgaantcgatctcatcatgcgt-cggcccttcgaccacaagtagtaggcg 349
Query: 374 gtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatcttgccgaac 433
||||||||||||||||||||||| || || ||| ||||||||||||||||||||| |
Sbjct: 348 gtgacggtgccggcggagttgccggggacgagcttgagctgcatgtcgatcttgccgtag 289
Query: 434 aggtactcgtgccgggactggaacccggagccggacgtgcggtccagcgacagcgtcagc 493
|||||||||||| |||||||||||| ||||||||||| | |||||||| |||||||||
Sbjct: 288 aggtactcgtgcttggactggaaccctgagccggacgtcctgtccagcgtgagcgtcagc 229
Query: 494 agccgcccgttgtcaaggaccttgccccgcccgtcgccccacgtgatgtccagctcctgg 553
||| | || | || |||| |||||| || || |||||||| |||||||| | |||||||
Sbjct: 228 agctggccatcctcgaggatcttgccacggccatcgccccaggtgatgtcgaactcctgg 169
Query: 554 t 554
|
Sbjct: 168 t 168
>gb|AY873214.1|AY873214 04ET3_387_C_072_000_001C08 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_387_C_072_000_001C08, DNA sequence
Length = 612
Score = 170 bits (86), Expect = 7e-040
Identities = 104/110 (94%)
Strand = Plus / Minus
Query: 233 aggcggaactgctgctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtg 292
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 595 aggcggaactgctgctcgcgctgcccctgcccctgcgtgaacacgttggtgtgcagcgtg 536
Query: 293 tagggctcgccggacacgttgcccaggaactcgaagtcgatctcgtcgtg 342
|| |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 535 tacggctcgccggtcacgttccccaggaactcgaagtcgatctcatcgtg 486
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgat 423
|||| ||| |||||||||||||||||||||||| || || ||| | ||||||||||||
Sbjct: 330 gtagaaggtggtgacggtgccggcggagttgccggggacgagcttgatctgcatgtcgat 271
Query: 424 cttgccgaacaggtactcgtgccgggactggaacccggagccgga 468
||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 270 cttgccgaagaggtactcgctcttggactggaacccagagccgga 226
>gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016H04r, DNA sequence
Length = 772
Score = 151 bits (76), Expect = 6e-034
Identities = 143/163 (87%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 735 gggttccagagaatggagtaggtgtggaagtcgncggtggggtcgaaccagagcacgaac 676
Query: 242 tgctgctcccgct-gcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctc 300
|||||||| |||| |||| |||| ||| |||| | ||||||||||||| ||| |||||
Sbjct: 675 tgctgctcacgctggcccttgccgtcgc-tgaagatgttggtgtgcagcaggtacggctc 617
Query: 301 gccggacacgttgcccaggaactcgaagtcgatctcgtcgtgc 343
|||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 616 gccgctcacgttgcccaggaactcgaagtccacctcgtcgtgc 574
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 906
Score = 145 bits (73), Expect = 4e-032
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 138 agtccctgatgngcatgtcgtccaccatgaagatgacgtgcttggggttccagaggatgg 197
|||||||||| ||| | ||||||||| | |||| ||||||||||||||||| |||||
Sbjct: 550 agtccctgatcggcacgccgtccaccagaattatgatgtgcttggggttccagacgatgg 491
Query: 198 agtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctc 439
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 411 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 352
Query: 337 gtcgtg 342
||||||
Sbjct: 351 gtcgtg 346
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 306 ggtgacggtgccggcggagttg 285
>gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0065O07r, DNA sequence
Length = 448
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 338
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 339 cagaggcggaactgctgctc 358
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactc 324
|||||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 386 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactc 433
>gb|AU063923.1|AU063923 AU063923 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2104_1A, mRNA sequence
Length = 373
Score = 143 bits (72), Expect = 2e-031
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 358 cgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcat 417
||||| |||||||||||||||||||||| |||||||||| || || ||| ||||| ||
Sbjct: 373 cgacaagtagtaggcggtgacggtgccgncggagttgccggggacgagcttgagctgnat 314
Query: 418 gtcgatcttgccgaacaggtactcgtgccgggactggaacccggagccggacgtgcggtc 477
||||||||||||| | |||||||||||| |||||||||||| ||||||||||| | |||
Sbjct: 313 gtcgatcttgccgtagaggtactcgtgcttggactggaaccctgagccggacgtcctgtc 254
Query: 478 cagcgacagcgtcagcagccgcccgttgtcaaggaccttgccccgcccgtcgccccacgt 537
||||| ||||||||||| | || | || |||| |||||| || || |||||||| ||
Sbjct: 253 cagcgtgagcgtcagcagntggccatcctcgaggatcttgccacggccatcgccccaggt 194
Query: 538 gatgtccagctcctggt 554
|||||| | ||||||||
Sbjct: 193 gatgtcgaactcctggt 177
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 118937 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 118996
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 118997 cagaggcggaactgctgctc 119016
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 199 gtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctcc 250
||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 62278 gtaggtgtggaagtcggcggtggggtcgaaccagaggtagaactggtgctcc 62227
Score = 69.9 bits (35), Expect = 2e-009
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcgtgcgcgccgccct-gc--gacgacaggta 366
|||||||| |||||||| ||||||||||||||| || |||||| || || || |||||
Sbjct: 62167 gttgcccatgaactcgatgtcgatctcgtcgtggccgtcgccctcgccggaggagaggta 62108
Query: 367 gtaggcggtgacggtgccggcggagttgcc 396
| ||| ||||||||||||||||||||||||
Sbjct: 62107 gaaggaggtgacggtgccggcggagttgcc 62078
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 119044 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 119103
Query: 337 gtcgtg 342
||||||
Sbjct: 119104 gtcgtg 119109
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 119260 ggtgacggtgccggcggagttg 119281
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3008 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 3067
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 3068 cagaggcggaactgctgctc 3087
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 3115 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 3174
Query: 337 gtcgtg 342
||||||
Sbjct: 3175 gtcgtg 3180
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 3331 ggtgacggtgccggcggagttg 3352
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8146354 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 8146413
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 8146414 cagaggcggaactgctgctc 8146433
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 199 gtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctcc 250
||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 8089695 gtaggtgtggaagtcggcggtggggtcgaaccagaggtagaactggtgctcc 8089644
Score = 69.9 bits (35), Expect = 2e-009
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcgtgcgcgccgccct-gc--gacgacaggta 366
|||||||| |||||||| ||||||||||||||| || |||||| || || || |||||
Sbjct: 8089584 gttgcccatgaactcgatgtcgatctcgtcgtggccgtcgccctcgccggaggagaggta 8089525
Query: 367 gtaggcggtgacggtgccggcggagttgcc 396
| ||| ||||||||||||||||||||||||
Sbjct: 8089524 gaaggaggtgacggtgccggcggagttgcc 8089495
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 8146461 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 8146520
Query: 337 gtcgtg 342
||||||
Sbjct: 8146521 gtcgtg 8146526
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 8146677 ggtgacggtgccggcggagttg 8146698
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 134012 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 134071
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 134072 cagaggcggaactgctgctc 134091
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 134119 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 134178
Query: 337 gtcgtg 342
||||||
Sbjct: 134179 gtcgtg 134184
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 134335 ggtgacggtgccggcggagttg 134356
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7736018 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 7736077
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 7736078 cagaggcggaactgctgctc 7736097
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 7736125 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 7736184
Query: 337 gtcgtg 342
||||||
Sbjct: 7736185 gtcgtg 7736190
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 7736341 ggtgacggtgccggcggagttg 7736362
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 170 atgacgtgcttggggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaac 229
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8378828 atgatgtgcttggggttccagacgatggagtaggtgtggaagtcggcggtggggtcgaac 8378887
Query: 230 cagaggcggaactgctgctc 249
||||||||||||||||||||
Sbjct: 8378888 cagaggcggaactgctgctc 8378907
Score = 79.8 bits (40), Expect = 2e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 199 gtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctcc 250
||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 8322169 gtaggtgtggaagtcggcggtggggtcgaaccagaggtagaactggtgctcc 8322118
Score = 69.9 bits (35), Expect = 2e-009
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 310 gttgcccaggaactcgaagtcgatctcgtcgtgcgcgccgccct-gc--gacgacaggta 366
|||||||| |||||||| ||||||||||||||| || |||||| || || || |||||
Sbjct: 8322058 gttgcccatgaactcgatgtcgatctcgtcgtggccgtcgccctcgccggaggagaggta 8321999
Query: 367 gtaggcggtgacggtgccggcggagttgcc 396
| ||| ||||||||||||||||||||||||
Sbjct: 8321998 gaaggaggtgacggtgccggcggagttgcc 8321969
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 277 gttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagtcgatctc 336
|||||||||||| |||||||||||||||| ||||| || |||||||| | ||| | |||
Sbjct: 8378935 gttggtgtgcagggtgtagggctcgccggtgacgttcccgaggaactccaggtccacctc 8378994
Query: 337 gtcgtg 342
||||||
Sbjct: 8378995 gtcgtg 8379000
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 373 ggtgacggtgccggcggagttg 394
||||||||||||||||||||||
Sbjct: 8379151 ggtgacggtgccggcggagttg 8379172
>gb|C25186.1|C25186 C25186 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5538_1A, mRNA sequence
Length = 441
Score = 131 bits (66), Expect = 6e-028
Identities = 166/199 (83%), Gaps = 1/199 (0%)
Strand = Plus / Minus
Query: 270 tgaacacgttggtgtgcagcgtgtagggctcgccggacacgttgcccaggaactcgaagt 329
||||||| ||| |||||| | |||| |||||||||| ||||| ||||||||||||||||
Sbjct: 441 tgaacactttgttgtgcancttgtacggctcgccggtcacgtc-cccaggaactcgaagt 383
Query: 330 cgatctcgtcgtgcgcgccgccctgcgacgacaggtagtaggcggtgacggtgccggcgg 389
||||||| ||||| | ||||||||| ||| |||| ||| ||||||||||||||||
Sbjct: 382 cgatctcatcgtgggtcgaaccctgcgacnacaagtagaaggtggtgacggtgccggcgn 323
Query: 390 agttgcccggcaccagccgcagctgcatgtcgatcttgccgaacaggtactcgtgccggg 449
||||||| || || ||| | ||||||||||||||||||||| ||||||||| | ||
Sbjct: 322 agttgccggggacgagcttgatctgcatgtcgatcttgccgaagaggtactcgctcttgg 263
Query: 450 actggaacccggagccgga 468
|||||||||| ||||||||
Sbjct: 262 actggaacccagagccgga 244
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 958,665
Number of Sequences: 438736
Number of extensions: 958665
Number of successful extensions: 8085
Number of sequences better than 0.5: 264
Number of HSP's better than 0.5 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6412
Number of HSP's gapped (non-prelim): 1588
length of query: 757
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 736
effective length of database: 2,791,206,460
effective search space: 2054327954560
effective search space used: 2054327954560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)