BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203235.2.1
(637 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA755015.1|CA755015 BR030011000_PLATE_A04_25_023.ab1 OA ... 301 2e-079
ref|XM_470237.1| Oryza sativa (japonica cultivar-group), p... 280 9e-073
gb|AC105734.2| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbar... 133 1e-028
gb|AACV01005877.1| Oryza sativa (japonica cultivar-group) c... 133 1e-028
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 133 1e-028
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|AQ290862.1|AQ290862 nbxb0037N04f CUGI Rice BAC Library O... 44 0.091
gb|AQ686710.1|AQ686710 nbxb0072P06r CUGI Rice BAC Library O... 44 0.091
dbj|AK068841.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.091
dbj|AK073913.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.091
dbj|AP004584.3| Oryza sativa (japonica cultivar-group) geno... 44 0.091
gb|AACV01017117.1| Oryza sativa (japonica cultivar-group) c... 44 0.091
gb|AACV01019694.1| Oryza sativa (japonica cultivar-group) c... 44 0.091
ref|XM_479730.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.091
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 44 0.091
dbj|AP005704.2| Oryza sativa (japonica cultivar-group) geno... 44 0.091
dbj|AP005678.3| Oryza sativa (japonica cultivar-group) geno... 44 0.091
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.091
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.091
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.091
gb|AQ575321.1|AQ575321 nbxb0087I23r CUGI Rice BAC Library O... 42 0.36
gb|AU089691.1|AU089691 AU089691 Rice callus Oryza sativa (j... 42 0.36
gb|CB674896.1|CB674896 OSJNEe10D15.f OSJNEe Oryza sativa (j... 42 0.36
gb|CB674897.1|CB674897 OSJNEe10D15.r OSJNEe Oryza sativa (j... 42 0.36
gb|CF334305.1|CF334305 JMT--03-I20.b1 AtJMT-overexpressing ... 42 0.36
gb|CV722887.1|CV722887 root--01-N21.g1 Rice root lambda pha... 42 0.36
dbj|AP004056.1| Oryza sativa (japonica cultivar-group) chro... 42 0.36
dbj|AK063239.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AK067164.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AK071123.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AK100515.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AK108175.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNB... 42 0.36
gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 ... 42 0.36
gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 ... 42 0.36
gb|AC108870.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 ... 42 0.36
gb|AC137620.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC O... 42 0.36
dbj|AP004876.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 42 0.36
ref|NT_107135.1| Oryza sativa (japonica cultivar-group) 42 0.36
gb|AACV01004670.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01008204.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01008246.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01012150.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01020506.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01023713.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
gb|AACV01024438.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NM_196385.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.36
ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chr... 42 0.36
ref|XM_470158.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.36
ref|XM_470385.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.36
ref|XM_475232.1| Oryza sativa (japonica cultivar-group), p... 42 0.36
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 42 0.36
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 42 0.36
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 0.36
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 42 0.36
dbj|AP005679.2| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP005742.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 42 0.36
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.36
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CH401266.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AC021891.6| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
>gb|CA755015.1|CA755015 BR030011000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030011000_PLATE_A04_25_023.ab1 similar to NP_181483.1|
(NM_129509) nodulin-like protein [Arabidopsis thaliana],
mRNA sequence
Length = 618
Score = 301 bits (152), Expect = 2e-079
Identities = 278/320 (86%)
Strand = Plus / Plus
Query: 257 gtcgccgtcctcatctggcccttcgcatactacctggagaaggggctgaggcctaaaatg 316
||||||||| || || ||| ||||| ||||||| |||||| |||||||| | ||||
Sbjct: 14 gtcgccgtcttcctcgcgcctttcgcctactaccaagagaagaaactgaggccgagaatg 73
Query: 317 acgctcatgctgttcgtggagatattcgtgctctcccttctcggggtgagcttaactctg 376
||| | |||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 74 acgttgatgctgtttctggagatcttcgtgctctcacttctaggggtgagcctaactctg 133
Query: 377 aacatgtacttcacgagcctgaagtacacgtccccaacgttcgtcacttccgtggtgaac 436
|||||||||||| ||||| | | |||||| |||||||| || ||||| ||||||||||||
Sbjct: 134 aacatgtacttcgcgagcttaatgtacacatccccaacctttgtcacgtccgtggtgaac 193
Query: 437 accatcgcctcgatgacgttcgtcatcgccatcatcctcaggatggagatcgtggacgtg 496
||| |||||||||| |||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 194 accgtcgcctcgatcacgttcgtcatcgccatcgtcgtcaggatggagatcgtcgacgtg 253
Query: 497 aagagcctacgcggggtcgccaaggtcgcagggaccgtggtgtcgttcgccggggtgacc 556
| |||| |||| ||| |||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 254 aggagcatacgagggctcgcgaaggtcgccgggacggtggtgtcgttcgccggggtgacc 313
Query: 557 accatgactctgtacaaagg 576
|||||||| |||||||||||
Sbjct: 314 accatgaccctgtacaaagg 333
>ref|XM_470237.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1242
Score = 280 bits (141), Expect = 9e-073
Identities = 273/317 (86%)
Strand = Plus / Plus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 74 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 133
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 134 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 193
Query: 282 catactacctggagaaggggctgaggcctaaaatgacgctcatgctgttcgtggagatat 341
| ||||||| |||||| |||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 194 cctactaccaagagaagaaactgaggccgagaatgacgttgatgctgtttctggagatct 253
Query: 342 tcgtgctctcccttctcggggtgagcttaactctgaacatgtacttcacgagcctgaagt 401
|||||||||| ||||| ||||||||| |||||||||||||||||||| ||||| | | ||
Sbjct: 254 tcgtgctctcacttctaggggtgagcctaactctgaacatgtacttcgcgagcttaatgt 313
Query: 402 acacgtccccaacgttcgtcacttccgtggtgaacaccatcgcctcgatgacgttcgtca 461
|||| |||||||| || ||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 314 acacatccccaacctttgtcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtca 373
Query: 462 tcgccatcatcctcagg 478
|||||||| || |||||
Sbjct: 374 tcgccatcgtcgtcagg 390
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 503 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 562
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 605
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0050N02, complete sequence
Length = 133373
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 79428 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 79369
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 79368 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 79310
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 79197 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 79138
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 79137 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 79095
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 79814 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 79755
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 79754 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 79695
Query: 282 catactacc 290
| |||||||
Sbjct: 79694 cctactacc 79686
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 79580 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 79525
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0038D20, from chromosome 3, complete sequence
Length = 165395
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 6465 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 6406
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 6405 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 6347
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 6234 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 6175
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6174 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 6132
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 6851 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 6792
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 6791 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 6732
Query: 282 catactacc 290
| |||||||
Sbjct: 6731 cctactacc 6723
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 6617 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 6562
>gb|AACV01005877.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005877, whole
genome shotgun sequence
Length = 12387
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 11454 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 11395
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 11394 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 11336
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 11223 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 11164
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11163 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 11121
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 11840 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 11781
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 11780 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 11721
Query: 282 catactacc 290
| |||||||
Sbjct: 11720 cctactacc 11712
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 11606 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 11551
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 1147084 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 1147025
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 1147024 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 1146966
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 1146853 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 1146794
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1146793 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 1146751
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 1147470 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 1147411
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 1147410 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 1147351
Query: 282 catactacc 290
| |||||||
Sbjct: 1147350 cctactacc 1147342
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 1147236 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 1147181
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 2736104 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 2736045
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 2736044 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 2735986
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 2735873 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 2735814
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2735813 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 2735771
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 2736490 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 2736431
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 2736430 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 2736371
Query: 282 catactacc 290
| |||||||
Sbjct: 2736370 cctactacc 2736362
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 2736256 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 2736201
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 2928466 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 2928407
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 2928406 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 2928348
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 2928235 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 2928176
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2928175 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 2928133
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 2928852 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 2928793
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 2928792 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 2928733
Query: 282 catactacc 290
| |||||||
Sbjct: 2928732 cctactacc 2928724
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 2928618 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 2928563
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 36181625 gccggcagcggcagcggcggc 36181645
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 35490821 gccggcagcggcagcggcggc 35490841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 2734619 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 2734560
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 2734559 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 2734501
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 2734388 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 2734329
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2734328 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 2734286
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 2735005 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 2734946
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 2734945 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 2734886
Query: 282 catactacc 290
| |||||||
Sbjct: 2734885 cctactacc 2734877
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 2734771 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 2734716
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 35272421 gccggcagcggcagcggcggc 35272441
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 34612219 gccggcagcggcagcggcggc 34612239
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcgg 636
|||||||||||||||||||||
Sbjct: 28627163 cgccggcagcggcagcggcgg 28627183
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
|||||||| |||||||||||||||||||| ||||| | | |||||| |||||||| || |
Sbjct: 2734509 gggtgagcctaactctgaacatgtacttcgcgagcttaatgtacacatccccaacctttg 2734450
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct: 2734449 tcacgtccgtggtgaacaccgtcgcctcgatcacgttcgtcatcgccatcgtcgtcagg 2734391
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||| |
Sbjct: 2734278 tcaggatggagatcgtcgacgtgaggagcatacgagggctcgcgaaggtcgccgggacgg 2734219
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaagg 576
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2734218 tggtgtcgttcgccggggtgaccaccatgaccctgtacaaagg 2734176
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 162 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctca 221
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 2734895 cgcagctgtgctacacgctcatgtacttcatcaccgaggccgcgttcaacaaggggctca 2734836
Query: 222 acccctacgtctacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcg 281
|||| | | ||||| |||||||||| ||||| | ||||||||| || || ||| ||||
Sbjct: 2734835 accctttcatctacgtcacctaccggcatctcgttgtcgccgtcttcctcgcgcctttcg 2734776
Query: 282 catactacc 290
| |||||||
Sbjct: 2734775 cctactacc 2734767
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 302 ctgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttct 357
|||||||| | ||||||| | |||||||| ||||||| ||||||||||| |||||
Sbjct: 2734661 ctgaggccgagaatgacgttgatgctgtttctggagatcttcgtgctctcacttct 2734606
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 35182349 gccggcagcggcagcggcggc 35182369
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 34522147 gccggcagcggcagcggcggc 34522167
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcgg 636
|||||||||||||||||||||
Sbjct: 28535839 cgccggcagcggcagcggcgg 28535859
>gb|AQ290862.1|AQ290862 nbxb0037N04f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0037N04f, DNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 37 aggtcgtcgacggcgggacgacgacg 62
>gb|AQ686710.1|AQ686710 nbxb0072P06r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0072P06r, DNA sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 37 aggtcgtcgacggcgggacgacgacg 62
>dbj|AK068841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013167F23, full
insert sequence
Length = 2667
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 41 cgccggcagcggcagcggcggc 62
>dbj|AK073913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F19, full
insert sequence
Length = 1594
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 145 aggtcgtcgacggcgggacgacgacg 170
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0007D08
Length = 183142
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 120020 cgccggcagcggcagcggcggc 120041
>gb|AACV01017117.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017117, whole
genome shotgun sequence
Length = 24033
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 15163 cgccggcagcggcagcggcggc 15142
>gb|AACV01019694.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019694, whole
genome shotgun sequence
Length = 16991
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 5684 aggtcgtcgacggcgggacgacgacg 5659
>ref|XM_479730.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2667
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 41 cgccggcagcggcagcggcggc 62
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 1272182 aggtcgtcgacggcgggacgacgacg 1272157
>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0448B03
Length = 147748
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 69048 aggtcgtcgacggcgggacgacgacg 69023
>dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1116_F08
Length = 133805
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 36274 aggtcgtcgacggcgggacgacgacg 36249
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 296486 cgccggcagcggcagcggcggc 296507
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 3989181 aggtcgtcgacggcgggacgacgacg 3989156
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 536401 cgccggcagcggcagcggcggc 536422
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 9395419 aggtcgtcgacggcgggacgacgacg 9395394
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 251 ctgctcgtcgccgtcctcatctggc 275
||||||| |||||||||||||||||
Sbjct: 20357647 ctgctcgccgccgtcctcatctggc 20357671
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 536401 cgccggcagcggcagcggcggc 536422
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcggc 637
||||||||||||||||||||||
Sbjct: 530060 cgccggcagcggcagcggcggc 530081
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.091
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 aggtcgtcgaaggcgggacgacgacg 112
|||||||||| |||||||||||||||
Sbjct: 10468669 aggtcgtcgacggcgggacgacgacg 10468644
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 251 ctgctcgtcgccgtcctcatctggc 275
||||||| |||||||||||||||||
Sbjct: 21449958 ctgctcgccgccgtcctcatctggc 21449982
>gb|AQ575321.1|AQ575321 nbxb0087I23r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0087I23r, DNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 151 gccggcagcggcagcggcggc 131
>gb|AU089691.1|AU089691 AU089691 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0073, mRNA sequence
Length = 462
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 64 gccggcagcggcagcggcggc 44
>gb|CB674896.1|CB674896 OSJNEe10D15.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10D15 5', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 414 gccggcagcggcagcggcggc 394
>gb|CB674897.1|CB674897 OSJNEe10D15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10D15 3', mRNA sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 397 gccggcagcggcagcggcggc 417
>gb|CF334305.1|CF334305 JMT--03-I20.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-I20, mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 111 gccggcagcggcagcggcggc 91
>gb|CV722887.1|CV722887 root--01-N21.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--01-N21, mRNA sequence
Length = 241
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 165 gccggcagcggcagcggcggc 145
>dbj|AP004056.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1306_C12,
*** SEQUENCING IN PROGRESS ***
Length = 137739
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 82 gcgggaggtcgtcgaaggcgg 102
|||||||||||||||||||||
Sbjct: 60591 gcgggaggtcgtcgaaggcgg 60571
>dbj|AK063239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G02, full
insert sequence
Length = 1293
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 733 gccggcagcggcagcggcggc 713
>dbj|AK067164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N20, full
insert sequence
Length = 1641
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 73 gccggcagcggcagcggcggc 53
>dbj|AK071123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081N23, full
insert sequence
Length = 1605
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 544 cgccggggtgaccaccatgac 564
|||||||||||||||||||||
Sbjct: 236 cgccggggtgaccaccatgac 256
>dbj|AK100515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100B19, full
insert sequence
Length = 2699
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 2301 gccggcagcggcagcggcggc 2281
>dbj|AK108175.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A05, full
insert sequence
Length = 1264
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 733 gccggcagcggcagcggcggc 713
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
sequence
Length = 143681
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cgccggcagcggcagcggcgg 636
|||||||||||||||||||||
Sbjct: 129969 cgccggcagcggcagcggcgg 129989
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence,
complete sequence
Length = 117505
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 4020 gccggcagcggcagcggcggc 4000
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
sequence
Length = 129302
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 121186 gccggcagcggcagcggcggc 121166
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05,
complete sequence
Length = 162223
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 616 cgccggcagcggcagcggcgg 636
|||||||||||||||||||||
Sbjct: 104502 cgccggcagcggcagcggcgg 104482
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
sequence
Length = 156606
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcggc 637
|||||||||||||||||||||
Sbjct: 61110 gccggcagcggcagcggcggc 61130
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18,
complete sequence
Length = 123508
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 449 atgacgttcgtcatcgccatcatcctcaggatggaga 485
||||| |||||||| ||| ||||| ||||||||||||
Sbjct: 107369 atgaccttcgtcatggccgtcatcttcaggatggaga 107333
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 124204
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 544 cgccggggtgaccaccatgac 564
|||||||||||||||||||||
Sbjct: 90296 cgccggggtgaccaccatgac 90276
>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0470G10
Length = 145419
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 82 gcgggaggtcgtcgaaggcgg 102
|||||||||||||||||||||
Sbjct: 109976 gcgggaggtcgtcgaaggcgg 109956
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 544 cgccggggtgaccaccatgac 564
|||||||||||||||||||||
Sbjct: 3094130 cgccggggtgaccaccatgac 3094110
>ref|NT_107135.1| Oryza sativa (japonica cultivar-group)
Length = 983661
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 616 cgccggcagcggcagcggcgg 636
|||||||||||||||||||||
Sbjct: 489737 cgccggcagcggcagcggcgg 489717
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 927,059
Number of Sequences: 438736
Number of extensions: 927059
Number of successful extensions: 12683
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11752
Number of HSP's gapped (non-prelim): 931
length of query: 637
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 616
effective length of database: 2,791,206,460
effective search space: 1719383179360
effective search space used: 1719383179360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)