BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 113 2e-022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 113 2e-022
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 113 2e-022
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 90 3e-015
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 88 1e-014
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 88 1e-014
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 88 1e-014
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 66 4e-008
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 66 4e-008
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 62 6e-007
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 62 6e-007
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 62 6e-007
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 58 9e-006
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 58 9e-006
gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NM_190223.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (j... 52 5e-004
gb|AC120530.3| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
gb|AACV01022705.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|AC146948.2| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 48 0.009
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01022704.1| Oryza sativa (japonica cultivar-group) c... 46 0.034
gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (... 44 0.13
gb|AQ866294.1|AQ866294 nbeb0027N09r CUGI Rice BAC Library (... 44 0.13
gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (... 44 0.13
gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (... 44 0.13
dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AP005523.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|AC130609.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
dbj|AP004681.2| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP003512.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP002819.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
gb|AACV01011554.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
gb|AACV01013994.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
gb|AACV01018251.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
ref|NM_192870.1| Oryza sativa (japonica cultivar-group), p... 44 0.13
ref|XM_476272.1| Oryza sativa (japonica cultivar-group), p... 44 0.13
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 44 0.13
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.13
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CH401213.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001330, whole
genome shotgun sequence
Length = 59730
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 25341 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 25282
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 25281 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 25222
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 25221 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 25162
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 25161 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 25102
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 25101 aaggactgccccg 25089
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 25064 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 25005
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 25004 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 24945
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 24944 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 24885
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 24884 agggctcgctccaggccctcgcttgcctc 24856
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 18428336 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 18428277
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 18428276 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 18428217
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 18428216 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 18428157
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 18428156 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 18428097
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 18428096 aaggactgccccg 18428084
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 18428059 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 18428000
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 18427999 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 18427940
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 18427939 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 18427880
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 18427879 agggctcgctccaggccctcgcttgcctc 18427851
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 10827253 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 10827312
Query: 481 c 481
|
Sbjct: 10827313 c 10827313
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 38823703 gcaccggcgacgactgcgtctccgtcggccc 38823733
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 38824391 caaccccatcatcatcgaccagcactactgcccc 38824424
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 10827030 cggcgacgactgcgtctccatcggc 10827054
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 24975554 caaccccatcatcatcgaccag 24975533
>ref|XM_463287.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1212
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Plus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 724 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 783
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 784 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 843
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 844 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 903
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 904 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 963
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 964 aaggactgccccg 976
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Plus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 1001 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 1060
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 1061 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 1120
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 1121 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 1180
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 1181 agggctcgctccaggccctcgcttgcctc 1209
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 1346568 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 1346509
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 1346508 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 1346449
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 1346448 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 1346389
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 1346388 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 1346329
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 1346328 aaggactgccccg 1346316
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 1346291 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 1346232
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 1346231 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 1346172
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 1346171 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 1346112
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 1346111 agggctcgctccaggccctcgcttgcctc 1346083
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 7893786 caaccccatcatcatcgaccag 7893765
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1108H10
Length = 136357
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 106953 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 106894
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 106893 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 106834
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 106833 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 106774
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 106773 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 106714
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 106713 aaggactgccccg 106701
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 106676 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 106617
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 106616 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 106557
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 106556 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 106497
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 106496 agggctcgctccaggccctcgcttgcctc 106468
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 1383556 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 1383497
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 1383496 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 1383437
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 1383436 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 1383377
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 1383376 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 1383317
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 1383316 aaggactgccccg 1383304
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 1383279 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 1383220
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 1383219 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 1383160
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 1383159 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 1383100
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 1383099 agggctcgctccaggccctcgcttgcctc 1383071
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 7888536 caaccccatcatcatcgaccag 7888515
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 18008679 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 18008620
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 18008619 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 18008560
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 18008559 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 18008500
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 18008499 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 18008440
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 18008439 aaggactgccccg 18008427
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 18008402 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 18008343
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 18008342 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 18008283
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 18008282 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 18008223
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 18008222 agggctcgctccaggccctcgcttgcctc 18008194
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 11043458 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 11043517
Query: 481 c 481
|
Sbjct: 11043518 c 11043518
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 38203654 gcaccggcgacgactgcgtctccgtcggccc 38203684
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 38204342 caaccccatcatcatcgaccagcactactgcccc 38204375
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 11043235 cggcgacgactgcgtctccatcggc 11043259
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 24513659 caaccccatcatcatcgaccag 24513638
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 113 bits (57), Expect = 2e-022
Identities = 204/253 (80%)
Strand = Plus / Minus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 18349619 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 18349560
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 18349559 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 18349500
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| ||||||||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 18349499 cggatcaagtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 18349440
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 18349439 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 18349380
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 18349379 aaggactgccccg 18349367
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 18349342 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 18349283
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 18349282 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 18349223
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 18349222 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 18349163
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 18349162 agggctcgctccaggccctcgcttgcctc 18349134
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 10829471 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 10829530
Query: 481 c 481
|
Sbjct: 10829531 c 10829531
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 38743033 gcaccggcgacgactgcgtctccgtcggccc 38743063
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 38743721 caaccccatcatcatcgaccagcactactgcccc 38743754
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 10829248 cggcgacgactgcgtctccatcggc 10829272
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 24896837 caaccccatcatcatcgaccag 24896816
>dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D20, full
insert sequence
Length = 1459
Score = 105 bits (53), Expect = 4e-020
Identities = 203/253 (80%)
Strand = Plus / Plus
Query: 247 atcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgag 306
||||||||||| ||||||||||| ||||| ||||| ||||| ||| | | |||||| |||
Sbjct: 785 atcacctgtgggcccgggcaggggatcagcgtggggtgcctgggcaggttcaaggacgag 844
Query: 307 aaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtg 366
|||||||||| ||||||||||| || || |||||||| | |||||| ||||||||||
Sbjct: 845 aaggacgtgacggacgtgacggtccgcgactgcgtgctccgcaacacctccaacggcgtc 904
Query: 367 cgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgag 426
|| |||| |||||| ||||| | ||| | ||||||||||| || || ||||||
Sbjct: 905 cggatcaggtcgtatgaggacgtgctgtccccgatcacggcgtccaggctaacgttcgag 964
Query: 427 aacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccag 486
||||| ||||||| | |||||||||||| | ||| | |||||| | | ||||||| ||
Sbjct: 965 aacattcggatggacggggtggccaacccggtgatcgtggaccagaagtactgccccgag 1024
Query: 487 aaggtctgccccg 499
|||| ||||||||
Sbjct: 1025 aaggactgccccg 1037
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Plus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 1062 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 1121
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 1122 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 1181
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 1182 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 1241
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 1242 agggctcgctccaggccctcgcttgcctc 1270
>gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1822, mRNA sequence
Length = 675
Score = 89.7 bits (45), Expect = 3e-015
Identities = 168/209 (80%)
Strand = Plus / Plus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
|||||||| |||| || |||||||||||| ||||||| || |||||| || |||||||
Sbjct: 246 ccatcaagaacgtgacgttccgcaacatcaccggcacctccaacacgccggaggccgtca 305
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| |||||||| || || ||| ||||||||| | ||| |||| |||||| |
Sbjct: 306 gcctactctgctctgaccagctgccctgcagcggcatggagctgctcgacgtcaacctga 365
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgcca 706
|||||| ||||||| |||||||||||||||| || |||| |||||||||||| | | |||
Sbjct: 366 agtacgacggcaaggacaacaagaccatggccgtctgcaccaacgccaagggcatctcca 425
Query: 707 agggaagcctccaggccctggattgcctc 735
|||| ||||||||||| | |||||||
Sbjct: 426 agggctcgctccaggccctcgcttgcctc 454
Score = 46.1 bits (23), Expect = 0.034
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 401 tcacggcgtcccatctcaccttcgagaacatcaggatggaggaggtggccaaccccatca 460
||||||||||| || || ||||||||||| ||||||| | |||||||||||| | |
Sbjct: 123 tcacggcgtccaggctaacgttcgagaacattcggatggacggggtggccaacccggtga 182
Query: 461 tcatcgaccagtacttctgcccccagaaggtctgccccg 499
|| | |||||| | | ||||||| |||||| ||||||||
Sbjct: 183 tcgtggaccagaagtactgccccgagaaggactgccccg 221
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Plus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 5 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 64
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 65 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 124
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 125 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 176
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Plus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 1079 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 1138
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 1139 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 1198
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 1199 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 1250
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 911 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 970
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 971 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 1026
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 139848 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 139789
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 139788 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 139729
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 139728 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 139677
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 110490 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 110431
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 110430 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 110371
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 110370 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 110319
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 100536 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 100477
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 100476 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 100417
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 100416 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 100357
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 100356 acatcaagatggaggacgttgctaaccccatcatcatcgac 100316
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 140016 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 139957
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 139956 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 139901
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 110658 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 110599
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 110598 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 110543
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 100234 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 100175
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 100174 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 100115
Query: 677 c 677
|
Sbjct: 100114 c 100114
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 100597 ggcaccggcgatgactgcatctccatcggccc 100566
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 87358 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 87299
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 87298 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 87239
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 87238 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 87187
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 58000 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 57941
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 57940 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 57881
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 57880 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 57829
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 48046 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 47987
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 47986 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 47927
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 47926 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 47867
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 47866 acatcaagatggaggacgttgctaaccccatcatcatcgac 47826
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 87526 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 87467
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 87466 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 87411
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 58168 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 58109
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 58108 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 58053
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 47744 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 47685
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 47684 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 47625
Query: 677 c 677
|
Sbjct: 47624 c 47624
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 48107 ggcaccggcgatgactgcatctccatcggccc 48076
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 110490 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 110431
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 110430 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 110371
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 110370 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 110319
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 100536 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 100477
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 100476 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 100417
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 100416 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 100357
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 100356 acatcaagatggaggacgttgctaaccccatcatcatcgac 100316
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 110658 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 110599
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 110598 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 110543
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 100234 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 100175
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 100174 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 100115
Query: 677 c 677
|
Sbjct: 100114 c 100114
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 100597 ggcaccggcgatgactgcatctccatcggccc 100566
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 20273848 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 20273789
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 20273788 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 20273729
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 20273728 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 20273677
Score = 87.7 bits (44), Expect = 1e-014
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 527 ccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtca 586
||||||||||| |||||||| |||||| ||||||| || ||||||||||| ||||| |
Sbjct: 20244490 ccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggccgtta 20244431
Query: 587 gcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcg 646
|||| ||||||||||| | || |||||||| ||||||| | | | || |||| ||||
Sbjct: 20244430 gcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaaggtcg 20244371
Query: 647 agtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| | |||| ||||||||||||||||| || |||| || ||||||||
Sbjct: 20244370 agtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 20244319
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 20234536 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 20234477
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 20234476 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 20234417
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 20234416 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 20234357
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 20234356 acatcaagatggaggacgttgctaaccccatcatcatcgac 20234316
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 20274016 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 20273957
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 20273956 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 20273901
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 20244658 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 20244599
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 20244598 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 20244543
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 20234234 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 20234175
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 20234174 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 20234115
Query: 677 c 677
|
Sbjct: 20234114 c 20234114
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 24001686 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 24001740
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 17969508 ggcaccggcgacgactgcgtctccatcgg 17969536
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 23997434 caccggcgacgactgcgtctccgtcggccc 23997463
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 17969767 ccaaccccatcatcatcgaccagcattactgccccca 17969803
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 20234597 ggcaccggcgatgactgcatctccatcggccc 20234566
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 24001955 caaccccatcatcatcgaccag 24001976
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 23997716 caaccccatcatcatcgaccag 23997737
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatc 213
||||||||||||||||||||||
Sbjct: 16112624 cggcgacgactgcgtctccatc 16112645
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 15727 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 15668
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 15667 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 15608
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 15607 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 15548
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 15547 acatcaagatggaggacgttgctaaccccatcatcatcgac 15507
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 25859 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 25800
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 25799 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 25744
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 15425 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 15366
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 15365 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 15306
Query: 677 c 677
|
Sbjct: 15305 c 15305
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 15788 ggcaccggcgatgactgcatctccatcggccc 15757
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 1633942 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 1633883
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 1633882 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 1633823
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 1633822 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 1633763
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 1633762 acatcaagatggaggacgttgctaaccccatcatcatcgac 1633722
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 1644074 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 1644015
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 1644014 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 1643959
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 1633640 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 1633581
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 1633580 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 1633521
Query: 677 c 677
|
Sbjct: 1633520 c 1633520
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 5322984 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 5323038
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 5318732 caccggcgacgactgcgtctccgtcggccc 5318761
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 1634003 ggcaccggcgatgactgcatctccatcggccc 1633972
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 5323253 caaccccatcatcatcgaccag 5323274
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 5319014 caaccccatcatcatcgaccag 5319035
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 73.8 bits (37), Expect = 1e-010
Identities = 175/221 (79%)
Strand = Plus / Minus
Query: 248 tcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgaga 307
||||||| |||||||| | |||||||| || ||| |||| ||| | |||||||| ||||
Sbjct: 19332679 tcacctgcggccccggctacggcatcagcgtcggcagcctgggcagatacaaggacgaga 19332620
Query: 308 aggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgc 367
||||||||| |||||| || || | |||||||| | ||| | ||||| ||||| |
Sbjct: 19332619 aggacgtgaccgacgtcaccgtcaaaaactgcgtgctcaagaagtctaccaatggcgtcc 19332560
Query: 368 gcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgaga 427
| |||||||| |||||||| |||| || |||||||| | ||| | | |||| | |||
Sbjct: 19332559 ggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacctacaaga 19332500
Query: 428 acatcaggatggaggaggtggccaaccccatcatcatcgac 468
|||||| ||||||||| || || ||||||||||||||||||
Sbjct: 19332499 acatcaagatggaggacgttgctaaccccatcatcatcgac 19332459
Score = 71.9 bits (36), Expect = 6e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtccc 412
||||||| ||||| || |||||||| || ||||| |||| || |||||||| || |||
Sbjct: 19342811 ccaccaatggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctcca 19342752
Query: 413 atctcaccttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgac 468
| | |||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 19342751 agtttacctacgagaacatcaagatggaggacgttgctaaccccatcatcatcgac 19342696
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 557 ccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgca 616
||||||| || ||||||||||| ||||| ||||| ||||||| || | || ||||||||
Sbjct: 19332377 ccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaagctgccgtgca 19332318
Query: 617 gcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatgg 676
||||||| | | | || |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 19332317 ccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaacaagaccatgg 19332258
Query: 677 c 677
|
Sbjct: 19332257 c 19332257
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 23021721 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 23021775
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 17502667 ggcaccggcgacgactgcgtctccatcgg 17502695
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 23017469 caccggcgacgactgcgtctccgtcggccc 23017498
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 17502926 ccaaccccatcatcatcgaccagcattactgccccca 17502962
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
||||||||||| |||||| |||||||||||||
Sbjct: 19332740 ggcaccggcgatgactgcatctccatcggccc 19332709
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 23021990 caaccccatcatcatcgaccag 23022011
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 23017751 caaccccatcatcatcgaccag 23017772
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatc 213
||||||||||||||||||||||
Sbjct: 15624041 cggcgacgactgcgtctccatc 15624062
>gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000807, whole
genome shotgun sequence
Length = 15948
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 13761 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 13702
Query: 481 c 481
|
Sbjct: 13701 c 13701
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 13984 cggcgacgactgcgtctccatcggc 13960
>ref|NM_183645.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1512
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 1150 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 1209
Query: 481 c 481
|
Sbjct: 1210 c 1210
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 927 cggcgacgactgcgtctccatcggc 951
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 776940 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 776999
Query: 481 c 481
|
Sbjct: 777000 c 777000
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 776717 cggcgacgactgcgtctccatcggc 776741
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0025P13
Length = 133242
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 16487 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 16546
Query: 481 c 481
|
Sbjct: 16547 c 16547
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 16264 cggcgacgactgcgtctccatcggc 16288
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 65.9 bits (33), Expect = 4e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 421 ttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgc 480
||||||||| | |||||||| | |||| |||||||||||||||||||||||||| ||||
Sbjct: 11043458 ttcgagaacgtgaggatggacgcggtgcgcaaccccatcatcatcgaccagtactactgc 11043517
Query: 481 c 481
|
Sbjct: 11043518 c 11043518
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 11043235 cggcgacgactgcgtctccatcggc 11043259
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 777 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 831
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 1046 caaccccatcatcatcgaccag 1067
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 1467171 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 1467225
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 1462919 caccggcgacgactgcgtctccgtcggccc 1462948
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 1467440 caaccccatcatcatcgaccag 1467461
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 1463201 caaccccatcatcatcgaccag 1463222
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 11379 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 11433
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 7127 caccggcgacgactgcgtctccgtcggccc 7156
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 11648 caaccccatcatcatcgaccag 11669
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 7409 caaccccatcatcatcgaccag 7430
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 131297 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 131351
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 127045 caccggcgacgactgcgtctccgtcggccc 127074
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 131566 caaccccatcatcatcgaccag 131587
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 127327 caaccccatcatcatcgaccag 127348
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 181 accattggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtca 235
||||| |||||||||||||||||| ||||||||||||| || | |||||| ||||
Sbjct: 32052 accatcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtca 32106
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 27800 caccggcgacgactgcgtctccgtcggccc 27829
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 32321 caaccccatcatcatcgaccag 32342
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 28082 caaccccatcatcatcgaccag 28103
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 2702030 ggcaccggcgacgactgcgtctccatcgg 2702058
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 2702289 ccaaccccatcatcatcgaccagcattactgccccca 2702325
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatc 213
||||||||||||||||||||||
Sbjct: 845146 cggcgacgactgcgtctccatc 845167
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0071G09
Length = 169148
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 35814 ggcaccggcgacgactgcgtctccatcgg 35842
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 36073 ccaaccccatcatcatcgaccagcattactgccccca 36109
>gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014109, whole
genome shotgun sequence
Length = 47054
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 17169 ggcaccggcgacgactgcgtctccatcgg 17141
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 16910 ccaaccccatcatcatcgaccagcattactgccccca 16874
>gb|CH401214.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000051
genomic scaffold, whole genome shotgun sequence
Length = 1060799
Score = 58.0 bits (29), Expect = 9e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcgg 215
|||||||||||||||||||||||||||||
Sbjct: 998151 ggcaccggcgacgactgcgtctccatcgg 998179
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtacttctgccccca 485
||||||||||||||||||||||| | | |||||||||
Sbjct: 998410 ccaaccccatcatcatcgaccagcattactgccccca 998446
>gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002829, whole
genome shotgun sequence
Length = 76829
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 18870 gcaccggcgacgactgcgtctccgtcggccc 18840
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 18182 caaccccatcatcatcgaccagcactactgcccc 18149
>ref|NM_190223.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1227
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 656 gcaccggcgacgactgcgtctccgtcggccc 686
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 921 caaccccatcatcatcgaccagcactactgcccc 954
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 13271086 gcaccggcgacgactgcgtctccgtcggccc 13271116
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 13271774 caaccccatcatcatcgaccagcactactgcccc 13271807
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1078G07
Length = 199457
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 15915 gcaccggcgacgactgcgtctccgtcggccc 15945
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 16603 caaccccatcatcatcgaccagcactactgcccc 16636
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctccatcggccc 218
||||||||||||||||||||||| |||||||
Sbjct: 13001933 gcaccggcgacgactgcgtctccgtcggccc 13001963
Score = 52.0 bits (26), Expect = 5e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 13002621 caaccccatcatcatcgaccagcactactgcccc 13002654
>gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02J24 3', mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 796 ggcaccggcgacgactgcgtctccat 771
>gb|AC120530.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0049D05,
*** SEQUENCING IN PROGRESS ***, 17 ordered pieces
Length = 144207
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 100829 ggcaccggcgacgactgcgtctccat 100854
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 99917 ggcaccggcgacgactgcgtctccat 99942
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 94271 gcaccggcgacgactgcgtctcc 94293
>dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E08, full
insert sequence
Length = 1456
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 715 caccggcgacgactgcgtctccgtcggccc 744
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 997 caaccccatcatcatcgaccag 1018
>gb|AACV01022705.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022705, whole
genome shotgun sequence
Length = 18936
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 16669 ggcaccggcgacgactgcgtctccat 16644
>gb|CH401261.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000098
genomic scaffold, whole genome shotgun sequence
Length = 1076157
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 322081 ggcaccggcgacgactgcgtctccat 322106
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 315947 gcaccggcgacgactgcgtctcc 315969
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 7524392 ggcaccggcgacgactgcgtctccat 7524367
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 7530526 gcaccggcgacgactgcgtctcc 7530504
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 8005127 ggcaccggcgacgactgcgtctccat 8005102
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 8010772 gcaccggcgacgactgcgtctcc 8010750
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
near S2137, complete sequence
Length = 197516
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 85972 ggcaccggcgacgactgcgtctccat 85947
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 91617 gcaccggcgacgactgcgtctcc 91595
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccat 212
||||||||||||||||||||||||||
Sbjct: 8075183 ggcaccggcgacgactgcgtctccat 8075158
Score = 46.1 bits (23), Expect = 0.034
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 188 gcaccggcgacgactgcgtctcc 210
|||||||||||||||||||||||
Sbjct: 8080828 gcaccggcgacgactgcgtctcc 8080806
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1225_F07
Length = 142772
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 191 ccggcgacgactgcgtctccatcggccc 218
|||||||||||||| |||||||||||||
Sbjct: 138984 ccggcgacgactgcatctccatcggccc 139011
>gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003552,
whole genome shotgun sequence
Length = 23711
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 191 ccggcgacgactgcgtctccatcggccc 218
|||||||||||||| |||||||||||||
Sbjct: 351 ccggcgacgactgcatctccatcggccc 378
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 252 ctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaagga 311
|||||||||||| || |||||| || ||| |||| ||||| |||||||| ||||||||
Sbjct: 789 ctgtggccccggtcacggcatctccgtcggcagcctcggccggtacaaggacgagaagga 848
Query: 312 cgtg 315
||||
Sbjct: 849 cgtg 852
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 191 ccggcgacgactgcgtctccatcggccc 218
|||||||||||||| |||||||||||||
Sbjct: 728 ccggcgacgactgcatctccatcggccc 755
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,094,683
Number of Sequences: 438736
Number of extensions: 1094683
Number of successful extensions: 7815
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6988
Number of HSP's gapped (non-prelim): 820
length of query: 923
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 902
effective length of database: 2,791,206,460
effective search space: 2517668226920
effective search space used: 2517668226920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)