BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110778.1| Oryza sativa (japonica cultivar-group) cDNA... 168 3e-039
gb|AC137744.2| Oryza sativa (japonica cultivar-group) chrom... 168 3e-039
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 168 3e-039
gb|AACV01023555.1| Oryza sativa (japonica cultivar-group) c... 168 3e-039
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 168 3e-039
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 168 3e-039
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 168 3e-039
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 168 3e-039
>dbj|AK110778.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B09, full
insert sequence
Length = 1410
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Minus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 1211 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 1152
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 1151 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 1092
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 1091 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 1032
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 1031 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 972
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 971 ccctgctttcca 960
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0074L11, complete sequence
Length = 180703
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Plus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 12408 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 12467
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 12468 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 12527
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 12528 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 12587
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 12588 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 12647
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 12648 ccctgctttcca 12659
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Plus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 318105 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 318164
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 318165 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 318224
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 318225 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 318284
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 318285 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 318344
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 318345 ccctgctttcca 318356
>gb|AACV01023555.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023555, whole
genome shotgun sequence
Length = 15404
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Plus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 5875 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 5934
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 5935 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 5994
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 5995 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 6054
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 6055 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 6114
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 6115 ccctgctttcca 6126
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Minus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 4854278 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 4854219
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 4854218 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 4854159
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 4854158 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 4854099
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 4854098 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 4854039
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 4854038 ccctgctttcca 4854027
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Minus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 19019260 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 19019201
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 19019200 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 19019141
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 19019140 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 19019081
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 19019080 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 19019021
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 19019020 ccctgctttcca 19019009
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Plus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 21660355 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 21660414
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 21660415 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 21660474
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 21660475 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 21660534
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 21660535 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 21660594
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 21660595 ccctgctttcca 21660606
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 168 bits (85), Expect = 3e-039
Identities = 210/252 (83%)
Strand = Plus / Plus
Query: 395 gtgaatgttgcactgctgcaagtgcgggttatcgtagttaaggtacctgttccagtagcc 454
||||||||||||||||||||||| ||||| || |||| |||| | ||||||| || |
Sbjct: 21970554 gtgaatgttgcactgctgcaagtatgggttgtcatagtcaaggaaattgttccaataatc 21970613
Query: 455 tctgtactttgggatagaaatctccaaccagggtttgagtttcccactgtagtggatgac 514
||||||||| || || || ||||||| ||||||||||||||| || ||||||||||| ||
Sbjct: 21970614 tctgtacttgggaatggagatctccagccagggtttgagttttccgctgtagtggatcac 21970673
Query: 515 agaggcactctcgagttcatctcttccgatgctggagtcatgaccgagccctagaacatg 574
| ||| ||||| | | |||||||||| ||||| ||||||||| ||||| ||||||||
Sbjct: 21970674 ggcggccctctcaattgcatctcttcctatgcttctgtcatgaccaagcccaagaacatg 21970733
Query: 575 ccaccggtggtccagaggcagcgttcggttgtagaagacaacctgacccagtggcaggct 634
|||||||||||| ||||||| ||| | ||||||||||||| ||| |||||||||| |||
Sbjct: 21970734 ccaccggtggtcaagaggcactgtttgattgtagaagacaatctggcccagtggcaagct 21970793
Query: 635 tcntgccttcca 646
| ||| |||||
Sbjct: 21970794 ccctgctttcca 21970805
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 842,027
Number of Sequences: 438736
Number of extensions: 842027
Number of successful extensions: 4543
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4509
Number of HSP's gapped (non-prelim): 34
length of query: 711
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 690
effective length of database: 2,791,206,460
effective search space: 1925932457400
effective search space used: 1925932457400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)