BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3128444.2.1
(857 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_190276.1| Oryza sativa (japonica cultivar-group), p... 500 e-139
gb|C98907.1|C98907 C98907 Rice panicle at flowering stage O... 224 6e-056
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 208 4e-051
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 208 4e-051
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
gb|C98908.1|C98908 C98908 Rice panicle at flowering stage O... 123 2e-025
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 64 1e-007
gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 48 0.008
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 48 0.008
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 48 0.008
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 48 0.008
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 48 0.008
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 48 0.008
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 48 0.008
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 48 0.008
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 48 0.008
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 48 0.008
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 48 0.008
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 48 0.008
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 48 0.008
gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (j... 48 0.008
gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (j... 48 0.008
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 48 0.008
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 48 0.008
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 48 0.008
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 48 0.008
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 48 0.008
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 48 0.008
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 48 0.008
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 48 0.008
gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (j... 48 0.008
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 48 0.008
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 48 0.008
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 48 0.008
gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-... 48 0.008
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.008
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 48 0.008
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.008
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 48 0.008
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|AU070534.1|AU070534 AU070534 Rice shoot Oryza sativa (ja... 44 0.12
gb|CA755317.1|CA755317 BR030017000_PLATE_H05_40_046.ab1 OA ... 42 0.49
gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (j... 42 0.49
gb|CB674065.1|CB674065 OSJNEe08O24.r OSJNEe Oryza sativa (j... 42 0.49
gb|CB676159.1|CB676159 OSJNEe12E07.r OSJNEe Oryza sativa (j... 42 0.49
dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.49
dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.49
gb|AACV01010101.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
ref|XM_473160.1| Oryza sativa (japonica cultivar-group), p... 42 0.49
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 42 0.49
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromoso... 42 0.49
emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromoso... 42 0.49
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.49
>ref|NM_190276.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1566
Score = 500 bits (252), Expect = e-139
Identities = 561/664 (84%)
Strand = Plus / Plus
Query: 17 ttgctgcacaacggaggattgactttcaacttggatggtacctagatccaatatattttg 76
|||||||| |||| ||| |||||||||| || ||||||||||| || ||||||||||| |
Sbjct: 872 ttgctgcagaacgaaggcttgactttcagctaggatggtacctggacccaatatatttcg 931
Query: 77 gtgattacccagaaagcatgcgtcagcgactgggcagtgatcttccaaccttctcagaga 136
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 932 gtgattacccagaaagtatgcgtcagcgactgggcgatgatcttccaaccttctcggaga 991
Query: 137 aagataaagaattcatcaggaacaaaattgattttattggactaaatcattatacttcga 196
||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| |
Sbjct: 992 aagataaagaatttatcaggaacaaaattgactttgttggaataaatcattatacttcaa 1051
Query: 197 ggctcattgcccatcaccaaaatcctgatgatgtttatttctacaaagtgcaacaaatgg 256
| ||||||| ||||| || |||| || ||| ||||||| ||| ||| |||||| |||
Sbjct: 1052 gattcattgctcatcatcaggatccagaagatatttatttttaccgagtacaacaagtgg 1111
Query: 257 agagagtagaaaaatggagtagtggtgaaagcatcggtgaaagggctgcatctgaatggc 316
||||| |||||||||||| | |||||||| || ||||||||||| |||||||| ||||
Sbjct: 1112 agagaatagaaaaatggaacactggtgaaaaaattggtgaaagggccgcatctgagtggc 1171
Query: 317 ttgtcatagttccttggggccttcataaattacttaactatatagtgaagaaatacaaca 376
|| ||||||||||||||||||| | ||||||||||| ||| || |||| ||| |
Sbjct: 1172 ttttcatagttccttggggcctccggaaattacttaattatgcagcaaagagatatggaa 1231
Query: 377 gtccagtaatttatgttactgagaatggcatggatgatgaagacgatcaatccgcaacga 436
||| || || ||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1232 atcctgtgatatatgtaactgagaatggcatggatgaggaagatgatcaatcggcaacgc 1291
Query: 437 ttgaccaggtcctaaacgacacgaagagagtcggctacttcaacggatacctcaattcgg 496
||||||| ||| | || || |||| ||| || || |||||||| ||||||||| || |
Sbjct: 1292 ttgaccaagtcttgaatgatacgacgagggttggttacttcaaaggatacctcgcgtcag 1351
Query: 497 ttgcgcaggcgatcaaggacggggctgatgtccgtgggtacttcgcgtggtcattcctgg 556
|||| || || |||||||| || |||||||| |||||||||||||| ||||| |||||||
Sbjct: 1352 ttgcacaagcaatcaaggatggtgctgatgttcgtgggtacttcgcatggtcgttcctgg 1411
Query: 557 acaacttcgagtgggctatgggctacaccaagaggttcggcatagtctacgtcgattaca 616
|||||||||||||||||||||| |||||||||||||| ||||| || || || |||||||
Sbjct: 1412 acaacttcgagtgggctatgggatacaccaagaggtttggcattgtttatgttgattaca 1471
Query: 617 aggacgggctctccaggcaccccaaggcatcggccctctggttctcgcgcctcctcaagg 676
| | ||||| ||| |||| ||||| |||||||||| |||||||||||| || | ||||
Sbjct: 1472 aaaatgggctttcccggcatcccaaagcatcggcccggtggttctcgcgcttcttaaagg 1531
Query: 677 gcga 680
||||
Sbjct: 1532 gcga 1535
>gb|C98907.1|C98907 C98907 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3241_1A, mRNA sequence
Length = 395
Score = 224 bits (113), Expect = 6e-056
Identities = 248/293 (84%)
Strand = Plus / Plus
Query: 388 tatgttactgagaatggcatggatgatgaagacgatcaatccgcaacgattgaccaggtc 447
||||| |||||||||||||||||||| ||||| |||||||| |||||| ||||||| |||
Sbjct: 16 tatgtaactgagaatggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtc 75
Query: 448 ctaaacgacacgaagagagtcggctacttcaacggatacctcaattcggttgcgcaggcg 507
| || || |||| ||| || || |||||||| ||||||||| || ||||| || ||
Sbjct: 76 ttgaatgatacgacgagggttggttacttcaaaggatacctcgcgtcagttgcacaagca 135
Query: 508 atcaaggacggggctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgag 567
|||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 atcaaggatggtgctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgag 195
Query: 568 tgggctatgggctacaccaagaggttcggcatagtctacgtcgattacaaggacgggctc 627
||||||||||| |||||||||||||| ||||| || || || |||||||| | |||||
Sbjct: 196 tgggctatgggatacaccaagaggtttggcattgtttatgttgattacaaaaatgggctt 255
Query: 628 tccaggcaccccaaggcatcggccctctggttctcgcgcctcctcaagggcga 680
||| |||| ||||| |||||||||| |||||||||||| || | ||||||||
Sbjct: 256 tcccggcatcccaaagcatcggcccggtggttctcgcgcttcttaaagggcga 308
>gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002847, whole
genome shotgun sequence
Length = 99512
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Minus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 75654 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 75595
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 75594 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 75535
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 75534 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 75475
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 75474 atttttaccgagtacaacaagtggagaga 75446
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Minus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 73980 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 73921
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 73920 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 73861
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 73860 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 73820
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 74181 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 74122
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 74121 agggttggttacttcaaaggatacctc 74095
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 74817 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 74768
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 39081841 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 39081900
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 39081901 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 39081960
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 39081961 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 39082020
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 39082021 atttttaccgagtacaacaagtggagaga 39082049
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 39083515 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 39083574
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 39083575 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 39083634
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 39083635 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 39083675
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 39083314 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 39083373
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 39083374 agggttggttacttcaaaggatacctc 39083400
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 39082678 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 39082727
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 13529224 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 13529283
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 13529284 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 13529343
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 13529344 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 13529403
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 13529404 atttttaccgagtacaacaagtggagaga 13529432
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 13530898 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 13530957
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 13530958 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 13531017
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 13531018 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 13531058
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 13530697 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 13530756
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 13530757 agggttggttacttcaaaggatacctc 13530783
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 13530061 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 13530110
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506A10
Length = 145265
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 19151 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 19210
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 19211 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 19270
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 19271 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 19330
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 19331 atttttaccgagtacaacaagtggagaga 19359
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 20825 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 20884
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 20885 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 20944
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 20945 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 20985
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 20624 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 20683
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 20684 agggttggttacttcaaaggatacctc 20710
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 19988 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 20037
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 74804 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 74863
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 74864 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 74923
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 74924 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 74983
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 74984 atttttaccgagtacaacaagtggagaga 75012
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 76478 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 76537
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 76538 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 76597
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 76598 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 76638
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 76277 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 76336
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 76337 agggttggttacttcaaaggatacctc 76363
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 75641 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 75690
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 13247740 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 13247799
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 13247800 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 13247859
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 13247860 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 13247919
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 13247920 atttttaccgagtacaacaagtggagaga 13247948
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 13249414 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 13249473
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 13249474 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 13249533
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 13249534 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 13249574
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 13249213 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 13249272
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 13249273 agggttggttacttcaaaggatacctc 13249299
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 13248577 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 13248626
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 38449461 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 38449520
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 38449521 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 38449580
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 38449581 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 38449640
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 38449641 atttttaccgagtacaacaagtggagaga 38449669
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 38451135 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 38451194
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 38451195 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 38451254
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 38451255 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 38451295
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 38450934 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 38450993
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 38450994 agggttggttacttcaaaggatacctc 38451020
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 38450298 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 38450347
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 208 bits (105), Expect = 4e-051
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 53 ggtacctagatccaatatattttggtgattacccagaaagcatgcgtcagcgactgggca 112
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 39001171 ggtacctggacccaatatatttcggtgattacccagaaagtatgcgtcagcgactgggcg 39001230
Query: 113 gtgatcttccaaccttctcagagaaagataaagaattcatcaggaacaaaattgatttta 172
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 39001231 atgatcttccaaccttctcggagaaagataaagaatttatcaggaacaaaattgactttg 39001290
Query: 173 ttggactaaatcattatacttcgaggctcattgcccatcaccaaaatcctgatgatgttt 232
||||| |||||||||||||||| || ||||||| ||||| || |||| || ||| |||
Sbjct: 39001291 ttggaataaatcattatacttcaagattcattgctcatcatcaggatccagaagatattt 39001350
Query: 233 atttctacaaagtgcaacaaatggagaga 261
|||| ||| ||| |||||| ||||||||
Sbjct: 39001351 atttttaccgagtacaacaagtggagaga 39001379
Score = 153 bits (77), Expect = 2e-034
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 520 gctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggc 579
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 39002845 gctgatgttcgtgggtacttcgcatggtcgttcctggacaacttcgagtgggctatggga 39002904
Query: 580 tacaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccc 639
|||||||||||||| ||||| || || || |||||||| | ||||| ||| |||| |||
Sbjct: 39002905 tacaccaagaggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccc 39002964
Query: 640 aaggcatcggccctctggttctcgcgcctcctcaagggcga 680
|| |||||||||| |||||||||||| || | ||||||||
Sbjct: 39002965 aaagcatcggcccggtggttctcgcgcttcttaaagggcga 39003005
Score = 61.9 bits (31), Expect = 5e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 403 ggcatggatgatgaagacgatcaatccgcaacgattgaccaggtcctaaacgacacgaag 462
||||||||||| ||||| |||||||| |||||| ||||||| ||| | || || |||| |
Sbjct: 39002644 ggcatggatgaggaagatgatcaatcggcaacgcttgaccaagtcttgaatgatacgacg 39002703
Query: 463 agagtcggctacttcaacggatacctc 489
|| || || |||||||| |||||||||
Sbjct: 39002704 agggttggttacttcaaaggatacctc 39002730
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 304 gcatctgaatggcttgtcatagttccttggggccttcataaattacttaa 353
|||||||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct: 39002008 gcatctgagtggcttttcatagttccttggggcctccggaaattacttaa 39002057
>gb|C98908.1|C98908 C98908 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3241_2Z, mRNA sequence
Length = 462
Score = 123 bits (62), Expect = 2e-025
Identities = 136/160 (85%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 521 ctgatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggct 580
||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 34 ctgatgttcgtggntacttcgcttggtcgttcctggacaacttcgagtgggctatgggat 93
Query: 581 acaccaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcacccca 640
|| ||||| |||| ||||| || || || |||||||| | ||||| ||| |||| ||||
Sbjct: 94 acnccaag-ggtttggcattgtttatgttgattacaaaaatgggctttcccggcatccca 152
Query: 641 aggcatcggccctctggttctcgcgcctcctcaagggcga 680
| |||||||||| |||||||||||| || | ||||||||
Sbjct: 153 aagcatcggcccggtggttctcgcgcttcttaaagggcga 192
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 531 tgggtacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 309 tgggtacttcgcctggtctttcctggacaacttcgagtgg 270
>gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2571, mRNA sequence
Length = 467
Score = 50.1 bits (25), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 152 tacttcgcctggtctntcctggacaacttcgagtgg 187
>gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31025_7Z, mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 25 tacttcgcctggtctctcctggacaacttcgagtgg 60
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 88 tacttcgcctggtctctcctggacaacttcgagtgg 123
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 50 tacttcgcctggtctctcctggacaacttcgagtgg 85
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 180 tacttcgcctggtctctcctggacaacttcgagtgg 215
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 168 tacttcgcctggtctctcctggacaacttcgagtgg 203
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 193 tacttcgcctggtctctcctggacaacttcgagtgg 228
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 301 tacttcgcctggtctctcctggacaacttcgagtgg 336
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 305 tacttcgcctggtctctcctggacaacttcgagtgg 340
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 61 tacttcgcctggtctctcctggacaacttcgagtgg 96
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 164 tacttcgcctggtctctcctggacaacttcgagtgg 199
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 629 tacttcgcctggtctctcctggacaacttcgagtgg 664
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 630 tacttcgcctggtctctcctggacaacttcgagtgg 665
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 629 tacttcgcctggtctctcctggacaacttcgagtgg 664
>gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03A24 3', mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 378 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 335
>gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E17 3', mRNA sequence
Length = 763
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 430 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 387
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 393 tacttcgcctggtctctcctggacaacttcgagtgg 358
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 505 tacttcgcctggtctctcctggacaacttcgagtgg 470
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 480 tacttcgcctggtctctcctggacaacttcgagtgg 445
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 708 tacttcgcctggtctctcctggacaacttcgagtgg 743
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 392 tacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 392 tacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 490 tacttcgcctggtctctcctggacaacttcgagtgg 455
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 392 tacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08A17 3', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 527 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 484
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 385 tacttcgcctggtctctcctggacaacttcgagtgg 350
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 119 tacttcgcctggtctctcctggacaacttcgagtgg 154
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 1475 tacttcgcctggtctctcctggacaacttcgagtgg 1510
>gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-glucosidase mRNA,
complete cds
Length = 2032
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 1555 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 1598
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 911 tacttcgcctggtctctcctggacaacttcgagtgg 946
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 1470 tacttcgcctggtctctcctggacaacttcgagtgg 1505
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 1466 tacttcgcctggtctctcctggacaacttcgagtgg 1501
>dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A05, full
insert sequence
Length = 1828
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 1473 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 1516
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 73876 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 73833
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 79160 tacttcgcctggtctctcctggacaacttcgagtgg 79195
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 1467 tacttcgcctggtctctcctggacaacttcgagtgg 1502
>gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006096, whole
genome shotgun sequence
Length = 15111
Score = 48.1 bits (24), Expect = 0.008
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 529 cgtgggtacttcgcgtggtcattcctggacaacttcgagtgggc 572
|||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 9916 cgtgggtacttcgcgtggtctctgctggacaactgggagtgggc 9873
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| ||||||||||||||||||||
Sbjct: 4014 tacttcgcctggtctctcctggacaacttcgagtgg 3979
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,163,282
Number of Sequences: 438736
Number of extensions: 1163282
Number of successful extensions: 10073
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9651
Number of HSP's gapped (non-prelim): 421
length of query: 857
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 836
effective length of database: 2,791,206,460
effective search space: 2333448600560
effective search space used: 2333448600560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)