BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_475449.1| Oryza sativa (japonica cultivar-group), p... 529 e-148
dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA... 400 e-109
ref|NM_191079.1| Oryza sativa (japonica cultivar-group), p... 400 e-109
gb|AC093952.2| Oryza sativa (japonica cultivar-group) chrom... 343 7e-092
gb|AC118289.2| Oryza sativa (japonica cultivar-group) chrom... 343 7e-092
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 343 7e-092
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 343 7e-092
gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) c... 272 2e-070
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 272 2e-070
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 272 2e-070
dbj|AP003255.3| Oryza sativa (japonica cultivar-group) geno... 272 2e-070
dbj|AP003411.4| Oryza sativa (japonica cultivar-group) geno... 272 2e-070
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 272 2e-070
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 272 2e-070
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 272 2e-070
gb|C73196.1|C73196 C73196 Rice panicle at flowering stage O... 268 4e-069
gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering s... 264 6e-068
gb|C71978.1|C71978 C71978 Rice panicle at flowering stage O... 194 4e-047
gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) c... 190 7e-046
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 190 7e-046
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 190 7e-046
gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering s... 111 5e-022
gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Or... 86 3e-014
gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering s... 62 4e-007
gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering s... 54 1e-004
gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AQ690090.1|AQ690090 nbxb0081G10f CUGI Rice BAC Library O... 44 0.096
gb|AQ854578.1|AQ854578 nbxb0080N07r CUGI Rice BAC Library O... 44 0.096
emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC O... 44 0.096
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 44 0.096
gb|AACV01024400.1| Oryza sativa (japonica cultivar-group) c... 44 0.096
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.096
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.096
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.096
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.096
>ref|XM_475449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 529 bits (267), Expect = e-148
Identities = 396/439 (90%)
Strand = Plus / Plus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 1221 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 1280
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 1281 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 1340
Query: 121 cgatggctacgccttcttcggcgtcgggatgggccccgggaagtggtcgccggaggtgag 180
||| |||||||||||||||| |||||||||||| || |||||||||||| |||||| |||
Sbjct: 1341 cgacggctacgccttcttcgccgtcgggatggggccggggaagtggtcggcggaggagag 1400
Query: 181 gaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcggtc 240
|||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||
Sbjct: 1401 gaagacgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtc 1460
Query: 241 atggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaacat 300
|||||||| ||||||||||||||||||||||| || ||||||| |||| ||||||||
Sbjct: 1461 gtggacggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacat 1520
Query: 301 ctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcgatc 360
||||||| || |||||||||| |||||| |||||||||||||||||||||||||| | ||
Sbjct: 1521 ctgggagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtc 1580
Query: 361 actgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggct 420
|| || ||||||||||||||||| || |||||||||||||||||||||||||| || ||
Sbjct: 1581 gctccgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcct 1640
Query: 421 gccgctgccgccgtcctac 439
|||||||||||||||||||
Sbjct: 1641 gccgctgccgccgtcctac 1659
>dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111E13, full
insert sequence
Length = 2451
Score = 400 bits (202), Expect = e-109
Identities = 352/402 (87%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1433 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 1492
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggcccc 157
|||||||| |||||| ||||| || | |||||||||||||||| || ||| ||||| ||
Sbjct: 1493 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 1552
Query: 158 gggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcac 217
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 gggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtgagccggcac 1612
Query: 218 acgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggc 277
|||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||
Sbjct: 1613 acgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcgggg 1672
Query: 278 atgtggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatc 337
||||||| | | |||||||| |||||| ||||||||||||||| |||||| ||| ||
Sbjct: 1673 atgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcagttgtacgtc 1732
Query: 338 agcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctc 397
||||| || ||||||||| | || || || ||||||||||||||||| || | ||||||
Sbjct: 1733 agcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggagatagccctc 1792
Query: 398 cgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||||||||| || |||||| ||||||||||||||
Sbjct: 1793 cgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 1834
>ref|NM_191079.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1662
Score = 400 bits (202), Expect = e-109
Identities = 352/402 (87%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1249 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 1308
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggcccc 157
|||||||| |||||| ||||| || | |||||||||||||||| || ||| ||||| ||
Sbjct: 1309 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 1368
Query: 158 gggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcac 217
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 gggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtgagccggcac 1428
Query: 218 acgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggc 277
|||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||
Sbjct: 1429 acgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcgggg 1488
Query: 278 atgtggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatc 337
||||||| | | |||||||| |||||| ||||||||||||||| |||||| ||| ||
Sbjct: 1489 atgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcagttgtacgtc 1548
Query: 338 agcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctc 397
||||| || ||||||||| | || || || ||||||||||||||||| || | ||||||
Sbjct: 1549 agcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggagatagccctc 1608
Query: 398 cgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||||||||| || |||||| ||||||||||||||
Sbjct: 1609 cgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 1650
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
complete sequence
Length = 127642
Score = 343 bits (173), Expect = 7e-092
Identities = 263/293 (89%)
Strand = Plus / Minus
Query: 147 ggatgggccccgggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacgg 206
||||||| || |||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 19639 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 19580
Query: 207 tgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcg 266
||||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 19579 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 19520
Query: 267 acaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagc 326
||||||| || ||||||| |||| ||||||||||||||| || |||||||||| ||||
Sbjct: 19519 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 19460
Query: 327 agttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccg 386
|| |||||||||||||||||||||||||| | || || || ||||||||||||||||| |
Sbjct: 19459 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 19400
Query: 387 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 19399 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 19347
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 20349 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 20290
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 20289 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 20230
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 20229 cgacggctacgccttcttcgccgtcggg 20202
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
complete sequence
Length = 137357
Score = 343 bits (173), Expect = 7e-092
Identities = 263/293 (89%)
Strand = Plus / Minus
Query: 147 ggatgggccccgggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacgg 206
||||||| || |||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 128771 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 128712
Query: 207 tgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcg 266
||||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 128711 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 128652
Query: 267 acaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagc 326
||||||| || ||||||| |||| ||||||||||||||| || |||||||||| ||||
Sbjct: 128651 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 128592
Query: 327 agttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccg 386
|| |||||||||||||||||||||||||| | || || || ||||||||||||||||| |
Sbjct: 128591 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 128532
Query: 387 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 128531 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 128479
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 129481 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 129422
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 129421 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 129362
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 129361 cgacggctacgccttcttcgccgtcggg 129334
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 343 bits (173), Expect = 7e-092
Identities = 263/293 (89%)
Strand = Plus / Minus
Query: 147 ggatgggccccgggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacgg 206
||||||| || |||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 128771 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 128712
Query: 207 tgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcg 266
||||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 128711 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 128652
Query: 267 acaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagc 326
||||||| || ||||||| |||| ||||||||||||||| || |||||||||| ||||
Sbjct: 128651 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 128592
Query: 327 agttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccg 386
|| |||||||||||||||||||||||||| | || || || ||||||||||||||||| |
Sbjct: 128591 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 128532
Query: 387 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 128531 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 128479
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 129481 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 129422
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 129421 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 129362
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 129361 cgacggctacgccttcttcgccgtcggg 129334
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 343 bits (173), Expect = 7e-092
Identities = 263/293 (89%)
Strand = Plus / Minus
Query: 147 ggatgggccccgggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacgg 206
||||||| || |||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 23738818 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 23738759
Query: 207 tgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcg 266
||||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 23738758 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 23738699
Query: 267 acaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagc 326
||||||| || ||||||| |||| ||||||||||||||| || |||||||||| ||||
Sbjct: 23738698 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 23738639
Query: 327 agttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccg 386
|| |||||||||||||||||||||||||| | || || || ||||||||||||||||| |
Sbjct: 23738638 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 23738579
Query: 387 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 23738578 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 23738526
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 23739528 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 23739469
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 23739468 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 23739409
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 23739408 cgacggctacgccttcttcgccgtcggg 23739381
>gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002567, whole
genome shotgun sequence
Length = 43694
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Minus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2717 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 2658
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 2657 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 2598
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 2597 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 2538
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 2537 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 2478
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 2477 ctgccgatgccgccgtcctac 2457
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2959 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 2900
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 2899 aagagcatcgactccttccacatcaacggctacgccttcttcg 2857
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 34822566 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 34822625
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 34822626 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 34822685
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 34822686 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 34822745
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 34822746 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 34822805
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 34822806 ctgccgatgccgccgtcctac 34822826
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34822324 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34822383
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 34822384 aagagcatcgactccttccacatcaacggctacgccttcttcg 34822426
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9269949 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 9270008
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 9270009 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 9270068
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 9270069 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 9270128
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 9270129 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 9270188
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 9270189 ctgccgatgccgccgtcctac 9270209
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9269707 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 9269766
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 9269767 aagagcatcgactccttccacatcaacggctacgccttcttcg 9269809
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454H12
Length = 161004
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1068 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 1127
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 1128 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 1187
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 1188 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 1247
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 1248 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 1307
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 1308 ctgccgatgccgccgtcctac 1328
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 826 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 885
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 886 aagagcatcgactccttccacatcaacggctacgccttcttcg 928
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1148D12
Length = 132060
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 57136 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 57195
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 57196 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 57255
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 57256 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 57315
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 57316 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 57375
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 57376 ctgccgatgccgccgtcctac 57396
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 56894 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 56953
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 56954 aagagcatcgactccttccacatcaacggctacgccttcttcg 56996
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9090698 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 9090757
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 9090758 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 9090817
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 9090818 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 9090877
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 9090878 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 9090937
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 9090938 ctgccgatgccgccgtcctac 9090958
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9090456 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 9090515
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 9090516 aagagcatcgactccttccacatcaacggctacgccttcttcg 9090558
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 34292419 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 34292478
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 34292479 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 34292538
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 34292539 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 34292598
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 34292599 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 34292658
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 34292659 ctgccgatgccgccgtcctac 34292679
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34292177 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34292236
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 34292237 aagagcatcgactccttccacatcaacggctacgccttcttcg 34292279
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 272 bits (137), Expect = 2e-070
Identities = 230/261 (88%)
Strand = Plus / Plus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 34741896 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgagg 34741955
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | ||||||||||||||||||||||| ||||||| | | ||||||
Sbjct: 34741956 tcgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaac 34742015
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
|| |||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||| |
Sbjct: 34742016 atgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgagg 34742075
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || || ||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 34742076 tcgctccgggacgagtacaacatgccggagatagccctccgctgcggcaaggtcgtcggc 34742135
Query: 419 ctgccgctgccgccgtcctac 439
|||||| ||||||||||||||
Sbjct: 34742136 ctgccgatgccgccgtcctac 34742156
Score = 141 bits (71), Expect = 6e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34741654 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34741713
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcg 140
|||||||| |||||| ||||| || | ||||||||||||||||
Sbjct: 34741714 aagagcatcgactccttccacatcaacggctacgccttcttcg 34741756
>gb|C73196.1|C73196 C73196 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359_1A, mRNA sequence
Length = 418
Score = 268 bits (135), Expect = 4e-069
Identities = 212/239 (88%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| || ||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 125 cccaacgtnatctccgccgagttccgcaccttcatcgaggtcgtnttcgagaaccccgag 184
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggcccc 157
|||||||| |||||| ||||| || | |||||||||||||||| || ||| ||||| ||
Sbjct: 185 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggnatggggccg 244
Query: 158 gggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcac 217
|||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gggatatggacgccggagttcaggaagacgtacaacctgctggacacggtgagccggcac 304
Query: 218 acgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcggg 276
||||| |||||||||||| |||| |||||||| | ||||| |||||||||||||||||
Sbjct: 305 acgattcaggtgtacccgaggtcgtggacggcggtgatgctnacgttcgacaacgcggg 363
>gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633, mRNA sequence
Length = 434
Score = 264 bits (133), Expect = 6e-068
Identities = 209/235 (88%)
Strand = Plus / Plus
Query: 205 ggtgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgtt 264
||||||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||
Sbjct: 7 ggtgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgtt 66
Query: 265 cgacaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcgggga 324
||||||||| || ||||||| |||| ||||||||||||||| || ||||||| || ||
Sbjct: 67 cgacaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctnggcga 126
Query: 325 gcagttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcc 384
|||| |||||||||||||||||||||||||| | || || || |||||||||||||| ||
Sbjct: 127 gcagctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatncc 186
Query: 385 cgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
|| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 187 ggagaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 241
>gb|C71978.1|C71978 C71978 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725_1A, mRNA sequence
Length = 356
Score = 194 bits (98), Expect = 4e-047
Identities = 154/173 (89%)
Strand = Plus / Plus
Query: 38 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 97
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 184 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 243
Query: 98 aagagcatagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggcccc 157
|||||||| |||||| ||||| || | |||||||||||||||| || ||| ||||| ||
Sbjct: 244 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 303
Query: 158 gggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgag 210
|||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 gggatatggacgccggagtncaggaagacgtacaacctgctggacacggtgag 356
>gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012443,
whole genome shotgun sequence
Length = 7078
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 698 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 639
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 638 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 579
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 578 cgacggctacgccttcttcgccgtcggg 551
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 6128222 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 6128163
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 6128162 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 6128103
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 6128102 cgacggctacgccttcttcgccgtcggg 6128075
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 190 bits (96), Expect = 7e-046
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
|||||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 23428535 cgtgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagtt 23428476
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 23428475 ccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacct 23428416
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| |||||||||||||||| |||||||
Sbjct: 23428415 cgacggctacgccttcttcgccgtcggg 23428388
>gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1615, mRNA sequence
Length = 383
Score = 111 bits (56), Expect = 5e-022
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 368 gacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctg 427
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct: 5 gacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccgctg 64
Query: 428 ccgccgtcctac 439
||||||||||||
Sbjct: 65 ccgccgtcctac 76
>gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1911, mRNA sequence
Length = 212
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 389 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
|||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 6 aacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 56
>gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725, mRNA sequence
Length = 674
Score = 61.9 bits (31), Expect = 4e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 368 gacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctg 427
||||||||||||||||| || | ||| |||| |||||||||||||| | ||||| ||
Sbjct: 14 gacgagtacaacatgccggagatagccttccgttgcggcaaggtcgtcgncntgccgatg 73
Query: 428 ccgccgtcctacgcccc 444
|||||||||||| ||||
Sbjct: 74 ccgccgtcctactcccc 90
>gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359, mRNA sequence
Length = 444
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 401 tgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
|||||||||||||| || |||||| ||||||||||||||
Sbjct: 1 tgcggcaaggtcgtcggcctgccgatgccgccgtcctac 39
>gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016348, whole
genome shotgun sequence
Length = 5078
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 1569 tcgagatcgtgttcgagaaccccgagaa 1542
>ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1692
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 1325 tcgagatcgtgttcgagaaccccgagaa 1352
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409B11
Length = 168354
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 133163 tcgagatcgtgttcgagaaccccgagaa 133190
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 7066700 tcgagatcgtgttcgagaaccccgagaa 7066727
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 4996409 tcgagatcgtgttcgagaaccccgagaa 4996436
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 18395848 tcgagatcgtgttcgagaaccccgagaa 18395875
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tcgagatcgtcttcgagaaccccgagaa 99
|||||||||| |||||||||||||||||
Sbjct: 19443625 tcgagatcgtgttcgagaaccccgagaa 19443652
>gb|AQ690090.1|AQ690090 nbxb0081G10f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0081G10f, DNA sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 38 gggaagcggtggccggaggtgaggaagacg 67
>gb|AQ854578.1|AQ854578 nbxb0080N07r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0080N07r, DNA sequence
Length = 391
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 38 gggaagcggtggccggaggtgaggaagacg 67
>emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 130672
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 9525 gggaagcggtggccggaggtgaggaagacg 9554
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 2636663 gggaagcggtggccggaggtgaggaagacg 2636692
>gb|AACV01024400.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024400, whole
genome shotgun sequence
Length = 36941
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 31734 gggaagcggtggccggaggtgaggaagacg 31763
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111
genomic scaffold, whole genome shotgun sequence
Length = 3984395
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 168617 gggaagcggtggccggaggtgaggaagacg 168646
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 8217181 gggaagcggtggccggaggtgaggaagacg 8217210
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 10483719 gggaagcggtggccggaggtgaggaagacg 10483748
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 44.1 bits (22), Expect = 0.096
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 158 gggaagtggtcgccggaggtgaggaagacg 187
|||||| ||| |||||||||||||||||||
Sbjct: 10483601 gggaagcggtggccggaggtgaggaagacg 10483630
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,166,647
Number of Sequences: 438736
Number of extensions: 1166647
Number of successful extensions: 10435
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10045
Number of HSP's gapped (non-prelim): 390
length of query: 672
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 651
effective length of database: 2,791,206,460
effective search space: 1817075405460
effective search space used: 1817075405460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)