BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.1
(656 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA... 76 3e-011
ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA 76 3e-011
dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chro... 62 4e-007
dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
ref|NT_107232.1| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
dbj|AP003724.2| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Inser... 60 2e-006
dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chro... 60 2e-006
dbj|AP004039.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_471234.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromoso... 50 0.002
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A0... 46 0.024
gb|AC025905.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) c... 46 0.024
ref|NM_196827.1| Oryza sativa (japonica cultivar-group) put... 46 0.024
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 46 0.024
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.024
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.37
>dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148H12, full
insert sequence
Length = 1825
Score = 75.8 bits (38), Expect = 3e-011
Identities = 113/138 (81%)
Strand = Plus / Minus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccacacgccttc 567
||||||||||||||||||||| | |||| | ||||| |||||||||||||| | | ||
Sbjct: 1370 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccactcccactc 1311
Query: 568 ttccgcgtagggcttggggatcactttggcggcgatgtttggtggggctatgaagcggtt 627
||| ||| || | | ||||| ||||||||||||||| || ||||| ||| | |||||
Sbjct: 1310 cggcgcatagtgcctcgtgatcagtttggcggcgatgttgggaggggcgatgtatcggtt 1251
Query: 628 gccctggctgatgatggt 645
||||||||||| ||||||
Sbjct: 1250 gccctggctgaggatggt 1233
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 1508 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 1449
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 1448 gtaggagcctggcttgggctt 1428
>ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1825
Score = 75.8 bits (38), Expect = 3e-011
Identities = 113/138 (81%)
Strand = Plus / Minus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccacacgccttc 567
||||||||||||||||||||| | |||| | ||||| |||||||||||||| | | ||
Sbjct: 1370 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccactcccactc 1311
Query: 568 ttccgcgtagggcttggggatcactttggcggcgatgtttggtggggctatgaagcggtt 627
||| ||| || | | ||||| ||||||||||||||| || ||||| ||| | |||||
Sbjct: 1310 cggcgcatagtgcctcgtgatcagtttggcggcgatgttgggaggggcgatgtatcggtt 1251
Query: 628 gccctggctgatgatggt 645
||||||||||| ||||||
Sbjct: 1250 gccctggctgaggatggt 1233
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 1508 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 1449
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 1448 gtaggagcctggcttgggctt 1428
>dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0507H07, ***
SEQUENCING IN PROGRESS ***
Length = 101786
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 35134 catgaacaggtcctcctcagagtgccacacccagttcttccac 35176
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 35026 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 35067
>dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G06, full
insert sequence
Length = 2078
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 1396 catgaacaggtcctcctcagagtgccacacccagttcttccac 1354
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 1504 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 1463
>ref|NT_107232.1| Oryza sativa (japonica cultivar-group)
Length = 367211
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 332836 catgaacaggtcctcctcagagtgccacacccagttcttccac 332794
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 332944 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 332903
>gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014424,
whole genome shotgun sequence
Length = 13752
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 242 catgaacaggtcctcctcagagtgccacacccagttcttccac 200
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 350 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 309
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0498C03
Length = 146394
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 112019 catgaacaggtcctcctcagagtgccacacccagttcttccac 111977
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 112127 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 112086
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 3823783 catgaacaggtcctcctcagagtgccacacccagttcttccac 3823741
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 3823891 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 3823850
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 21522520 catgaacaggtcctcctcagagtgccacacccagttcttccac 21522478
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 21522628 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 21522587
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 517 catgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
|||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 22474886 catgaacaggtcctcctcagagtgccacacccagttcttccac 22474844
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 412 gaagcgggtgagccttgtaacgtaggttcctggcttgggctt 453
||||||||||||||| || ||||||| ||| |||||||||||
Sbjct: 22474994 gaagcgggtgagcctcgtgacgtaggatccgggcttgggctt 22474953
>gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm486_3.1, DNA sequence
Length = 439
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 329 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 382
>dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0542A02, ***
SEQUENCING IN PROGRESS ***
Length = 137445
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 126834 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 126781
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 127340 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 127289
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 127478 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 127419
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 127418 gtaggagcctggcttgggctt 127398
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1006_D05
Length = 128178
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 41466 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 41519
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 40960 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 41011
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 40822 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 40881
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 40882 gtaggagcctggcttgggctt 40902
>gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003607, whole
genome shotgun sequence
Length = 8977
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 7919 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 7866
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 8425 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 8374
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 8563 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 8504
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 8503 gtaggagcctggcttgggctt 8483
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 429855 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 429908
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 429349 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 429400
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 429211 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 429270
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 429271 gtaggagcctggcttgggctt 429291
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 6517531 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 6517584
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 6517025 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 6517076
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 6516887 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 6516946
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 6516947 gtaggagcctggcttgggctt 6516967
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 6517531 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 6517584
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 6517025 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 6517076
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 6516887 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 6516946
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 6516947 gtaggagcctggcttgggctt 6516967
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 592 tttggcggcgatgtttggtggggctatgaagcggttgccctggctgatgatggt 645
||||||||||||||| || ||||| ||| | |||||||||||||||| ||||||
Sbjct: 6399473 tttggcggcgatgttgggaggggcgatgtatcggttgccctggctgaggatggt 6399526
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 508 ggcgccgttcatgaacaggtcgtcctccgtgtgccacacccagttcttccac 559
||||||||||||||||||||| | |||| | ||||| ||||||||||||||
Sbjct: 6398967 ggcgccgttcatgaacaggtctccgtccgagcgccacgcccagttcttccac 6399018
Score = 42.1 bits (21), Expect = 0.37
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 373 tcagcacggcttgcccgtgcagcaggacagtgggccggagaagcgggtgagccttgtaac 432
||||||||||| ||| | | |||||| || | ||||| |||||| |||||||| | ||
Sbjct: 6398829 tcagcacggctcgccgggccggcaggagagcgcgccggcgaagcgtgtgagcctcctgac 6398888
Query: 433 gtaggttcctggcttgggctt 453
||||| ||||||||||||||
Sbjct: 6398889 gtaggagcctggcttgggctt 6398909
>gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008547, whole
genome shotgun sequence
Length = 35849
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 34217 agcggttgccctggctgttgatggttggc 34189
>ref|XM_471234.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1419
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 1165 agcggttgccctggctgttgatggttggc 1137
>ref|NT_107194.1| Oryza sativa (japonica cultivar-group)
Length = 2696338
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 2471875 agcggttgccctggctgttgatggttggc 2471847
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021
genomic scaffold, whole genome shotgun sequence
Length = 2817894
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 669988 agcggttgccctggctgttgatggttggc 669960
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 2155893 agcggttgccctggctgttgatggttggc 2155865
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20,
complete sequence
Length = 138572
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 87927 agcggttgccctggctgttgatggttggc 87899
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||||||||| |||||||||||
Sbjct: 2472025 agcggttgccctggctgttgatggttggc 2471997
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
sequence
Length = 117157
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 112466 ggggcgatgtagcggttgccctggctgttgatggt 112432
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
complete sequence
Length = 179157
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 124499 ggggcgatgtagcggttgccctggctgttgatggt 124533
>gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021719, whole
genome shotgun sequence
Length = 27956
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 11273 ggggcgatgtagcggttgccctggctgttgatggt 11307
>ref|NM_196827.1| Oryza sativa (japonica cultivar-group) putative pectate lyase
(OSJNBa0018F16.19), mRNA
Length = 1404
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 1028 ggggcgatgtagcggttgccctggctgttgatggt 994
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 2977241 ggggcgatgtagcggttgccctggctgttgatggt 2977275
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 4189169 ggggcgatgtagcggttgccctggctgttgatggt 4189203
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 15054963 ggggcgatgtagcggttgccctggctgttgatggt 15054997
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 16245610 ggggcgatgtagcggttgccctggctgttgatggt 16245644
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 46.1 bits (23), Expect = 0.024
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 611 ggggctatgaagcggttgccctggctgatgatggt 645
||||| ||| ||||||||||||||||| |||||||
Sbjct: 16253851 ggggcgatgtagcggttgccctggctgttgatggt 16253885
>dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D03, full
insert sequence
Length = 955
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 621 agcggttgccctggctgatgatggttggc 649
||||||||||| ||||| |||||||||||
Sbjct: 60 agcggttgccccggctgttgatggttggc 32
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 962,539
Number of Sequences: 438736
Number of extensions: 962539
Number of successful extensions: 6373
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6074
Number of HSP's gapped (non-prelim): 292
length of query: 656
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 635
effective length of database: 2,791,206,460
effective search space: 1772416102100
effective search space used: 1772416102100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)