BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.3
(1548 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 280 2e-072
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 280 2e-072
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 280 2e-072
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 280 2e-072
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 280 2e-072
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 280 2e-072
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 280 2e-072
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 280 2e-072
gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering s... 244 1e-061
gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm t... 113 3e-022
gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm t... 107 2e-020
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 107 2e-020
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 107 2e-020
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 107 2e-020
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 107 2e-020
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 107 2e-020
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 107 2e-020
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 107 2e-020
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 107 2e-020
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 100 4e-018
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 100 4e-018
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 100 4e-018
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 100 4e-018
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 72 1e-009
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 66 6e-008
dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA... 66 6e-008
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 66 6e-008
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 66 6e-008
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 66 6e-008
ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA 66 6e-008
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 66 6e-008
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 66 6e-008
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 66 6e-008
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 66 6e-008
gb|C72992.1|C72992 C72992 Rice panicle at flowering stage O... 60 4e-006
gb|C72981.2|C72981 C72981 Rice panicle at flowering stage O... 60 4e-006
gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) c... 60 4e-006
gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (... 56 6e-005
gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (... 56 6e-005
gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (... 56 6e-005
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 56 6e-005
gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Or... 56 6e-005
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 56 6e-005
gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering s... 54 2e-004
gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (j... 54 2e-004
dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK106802.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AP004886.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 54 2e-004
dbj|AP002819.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
ref|NM_192870.1| Oryza sativa (japonica cultivar-group), p... 54 2e-004
ref|XM_463996.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 54 2e-004
dbj|AP004150.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AQ690710.1|AQ690710 nbxb0082H20f CUGI Rice BAC Library O... 52 0.001
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP004681.2| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP003512.3| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|AACV01013994.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
gb|AACV01015402.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
ref|XM_477087.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 52 0.001
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CH401213.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AG212995.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 50 0.004
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK119482.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 50 0.004
ref|XM_477090.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AC120530.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
gb|AACV01022705.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
ref|NM_190223.1| Oryza sativa (japonica cultivar-group), p... 48 0.014
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.014
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 48 0.014
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.014
gb|AC146948.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 46 0.057
gb|AACV01022704.1| Oryza sativa (japonica cultivar-group) c... 46 0.057
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 46 0.057
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 46 0.057
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 46 0.057
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.057
gb|AC130609.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
gb|AACV01011554.1| Oryza sativa (japonica cultivar-group) c... 44 0.23
ref|XM_476272.1| Oryza sativa (japonica cultivar-group), p... 44 0.23
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 44 0.23
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.23
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1225_F07
Length = 142772
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 139937 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 139878
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 139877 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 139818
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 139817 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 139758
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 139757 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 139698
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 139697 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 139641
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 139080 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 139021
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 139020 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 138961
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 138960 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 138901
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 138900 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 138841
Query: 948 ttgctgtt 955
||||||||
Sbjct: 138840 ttgctgtt 138833
Score = 149 bits (75), Expect = 5e-033
Identities = 240/295 (81%)
Strand = Plus / Minus
Query: 1071 ccctgcccgtcgatggtgccgtggccgttgatggacaggttctcgacgttctcgatctcg 1130
||||| ||||||||| |||||||||||||||||| | ||| ||||||| ||| | ||||
Sbjct: 138171 ccctggccgtcgatgatgccgtggccgttgatggcgaagttgtcgacgtgctccacctcg 138112
Query: 1131 atccagttcctttggtacgcgctgaggtcgccggtgccgagcaggttgccgtcgagacgg 1190
|||||||| | | ||| ||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 138111 atccagttggtcttgtaggcgttgaggtcgccggtgccgaggaggttgccgtcgaggcgg 138052
Query: 1191 atgatgatggaggacttgcaggggcccttcagctccagcccgcccgtcaggtagttgccc 1250
| ||||||| | |||| || ||||| || | ||| |||| || |||||||| |||
Sbjct: 138051 aggatgatgctgctggtgcacggccccttgaggttgagcgcgccggtgaggtagttcccc 137992
Query: 1251 ggcgggatgacgatcttctgtacccccgtcgcctcgcacgcgttcttccacgccttgagg 1310
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct: 137991 ggcgggatcacgatcttctgcgtccccgtcgcgttgcacgcgttcttccacgcctgcagc 137932
Query: 1311 atcatcggggtgctgtccgacttgccgtcgcccttggcgcccagctgcgcgatgt 1365
| | || |||||||| | | ||||||||||| || ||||||||||||||||
Sbjct: 137931 acgaacgccgtgctgtcgctcgtcccgtcgcccttcgcccccagctgcgcgatgt 137877
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 139609 tccacgtccttctcgtccttgta 139587
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 140024 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 139965
Query: 323 gg 324
||
Sbjct: 139964 gg 139963
>gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003552, whole
genome shotgun sequence
Length = 23711
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 1304 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 1245
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 1244 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 1185
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1184 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 1125
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 1124 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 1065
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 1064 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 1008
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 447 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 388
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 387 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 328
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 327 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 268
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 267 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 208
Query: 948 ttgctgtt 955
||||||||
Sbjct: 207 ttgctgtt 200
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 976 tccacgtccttctcgtccttgta 954
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 1391 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 1332
Query: 323 gg 324
||
Sbjct: 1331 gg 1330
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 1182 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 1123
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 1122 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 1063
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1062 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 1003
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 1002 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 943
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 942 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 886
Score = 250 bits (126), Expect = 2e-063
Identities = 240/278 (86%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctggg 737
||||||||||||||||||||||| || || |||||||||||| ||||||||| || |||
Sbjct: 854 tccacgtccttctcgtccttgtaccggccgaggctgccgacggagatgccgtgaccgggg 795
Query: 738 ccgcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcg 797
|| || |||||| | || ||||| ||||||| | ||||||||||||||||||||||||
Sbjct: 794 ccacagcggacgccgttgacgcggaccatcttggtgccggggccgatggagatgcagtcg 735
Query: 798 tcgccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatg 857
|||||| || ||||||||||| ||||||||| | |||| |||||||||||| |||||||
Sbjct: 734 tcgccggcggcgatggtggtggagctgatggtgatgttggtggagtcgccgacgtggatg 675
Query: 858 ccgtccgtgttggggctgtcgccgggggccttgaccgtcactttgtcgatcagcacgttc 917
||||||||||| |||||||| || || | | ||| ||||| |||||||||| |||||||
Sbjct: 674 ccgtccgtgtttgggctgtcccccggcgacgtgatggtcaccttgtcgatcaccacgttc 615
Query: 918 ttgcactcgaagatgttgaggtggaagaacttgctgtt 955
|||| |||| | ||||||||||||||||||||||||||
Sbjct: 614 ttgctctcgtatatgttgaggtggaagaacttgctgtt 577
Score = 161 bits (81), Expect = 1e-036
Identities = 294/365 (80%)
Strand = Plus / Minus
Query: 1001 caccaagctattcgggaggatcttgcaattgtaagaatgctggcactggttcttgctcca 1060
|||||||||||| |||||||||||||| ||||| | | ||||||||| | | ||||
Sbjct: 531 caccaagctattggggaggatcttgcagttgtagttcttgttgcactggttgtgggtcca 472
Query: 1061 caccagggctccctgcccgtcgatggtgccgtggccgttgatggacaggttctcgacgtt 1120
|| |||| ||||| ||||||||| |||||||||||||||||| | ||| |||||||
Sbjct: 471 gacgagggggccctggccgtcgatgatgccgtggccgttgatggcgaagttgtcgacgtg 412
Query: 1121 ctcgatctcgatccagttcctttggtacgcgctgaggtcgccggtgccgagcaggttgcc 1180
||| | |||||||||||| | | ||| ||| ||||||||||||||||||| ||||||||
Sbjct: 411 ctccacctcgatccagttggtcttgtaggcgttgaggtcgccggtgccgaggaggttgcc 352
Query: 1181 gtcgagacggatgatgatggaggacttgcaggggcccttcagctccagcccgcccgtcag 1240
|||||| |||| ||||||| | |||| || ||||| || | ||| |||| || ||
Sbjct: 351 gtcgaggcggaggatgatgctgctggtgcacggccccttgaggttgagcgcgccggtgag 292
Query: 1241 gtagttgcccggcgggatgacgatcttctgtacccccgtcgcctcgcacgcgttcttcca 1300
|||||| ||||||||||| ||||||||||| ||||||||| | |||||||||||||||
Sbjct: 291 gtagttccccggcgggatcacgatcttctgcgtccccgtcgcgttgcacgcgttcttcca 232
Query: 1301 cgccttgaggatcatcggggtgctgtccgacttgccgtcgcccttggcgcccagctgcgc 1360
||||| || | | || |||||||| | | ||||||||||| || |||||||||||
Sbjct: 231 cgcctgcagcacgaacgccgtgctgtcgctcgtcccgtcgcccttcgcccccagctgcgc 172
Query: 1361 gatgt 1365
|||||
Sbjct: 171 gatgt 167
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 1269 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 1210
Query: 323 gg 324
||
Sbjct: 1209 gg 1208
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 785706 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 785647
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 785646 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 785587
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 785586 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 785527
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 785526 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 785467
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 785466 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 785410
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 784849 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 784790
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 784789 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 784730
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 784729 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 784670
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 784669 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 784610
Query: 948 ttgctgtt 955
||||||||
Sbjct: 784609 ttgctgtt 784602
Score = 149 bits (75), Expect = 5e-033
Identities = 240/295 (81%)
Strand = Plus / Minus
Query: 1071 ccctgcccgtcgatggtgccgtggccgttgatggacaggttctcgacgttctcgatctcg 1130
||||| ||||||||| |||||||||||||||||| | ||| ||||||| ||| | ||||
Sbjct: 783940 ccctggccgtcgatgatgccgtggccgttgatggcgaagttgtcgacgtgctccacctcg 783881
Query: 1131 atccagttcctttggtacgcgctgaggtcgccggtgccgagcaggttgccgtcgagacgg 1190
|||||||| | | ||| ||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 783880 atccagttggtcttgtaggcgttgaggtcgccggtgccgaggaggttgccgtcgaggcgg 783821
Query: 1191 atgatgatggaggacttgcaggggcccttcagctccagcccgcccgtcaggtagttgccc 1250
| ||||||| | |||| || ||||| || | ||| |||| || |||||||| |||
Sbjct: 783820 aggatgatgctgctggtgcacggccccttgaggttgagcgcgccggtgaggtagttcccc 783761
Query: 1251 ggcgggatgacgatcttctgtacccccgtcgcctcgcacgcgttcttccacgccttgagg 1310
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct: 783760 ggcgggatcacgatcttctgcgtccccgtcgcgttgcacgcgttcttccacgcctgcagc 783701
Query: 1311 atcatcggggtgctgtccgacttgccgtcgcccttggcgcccagctgcgcgatgt 1365
| | || |||||||| | | ||||||||||| || ||||||||||||||||
Sbjct: 783700 acgaacgccgtgctgtcgctcgtcccgtcgcccttcgcccccagctgcgcgatgt 783646
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 785378 tccacgtccttctcgtccttgta 785356
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 785793 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 785734
Query: 323 gg 324
||
Sbjct: 785733 gg 785732
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1524_D08
Length = 143046
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 67215 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 67156
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 67155 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 67096
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 67095 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 67036
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 67035 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 66976
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 66975 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 66919
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 66358 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 66299
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 66298 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 66239
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 66238 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 66179
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 66178 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 66119
Query: 948 ttgctgtt 955
||||||||
Sbjct: 66118 ttgctgtt 66111
Score = 149 bits (75), Expect = 5e-033
Identities = 240/295 (81%)
Strand = Plus / Minus
Query: 1071 ccctgcccgtcgatggtgccgtggccgttgatggacaggttctcgacgttctcgatctcg 1130
||||| ||||||||| |||||||||||||||||| | ||| ||||||| ||| | ||||
Sbjct: 65449 ccctggccgtcgatgatgccgtggccgttgatggcgaagttgtcgacgtgctccacctcg 65390
Query: 1131 atccagttcctttggtacgcgctgaggtcgccggtgccgagcaggttgccgtcgagacgg 1190
|||||||| | | ||| ||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 65389 atccagttggtcttgtaggcgttgaggtcgccggtgccgaggaggttgccgtcgaggcgg 65330
Query: 1191 atgatgatggaggacttgcaggggcccttcagctccagcccgcccgtcaggtagttgccc 1250
| ||||||| | |||| || ||||| || | ||| |||| || |||||||| |||
Sbjct: 65329 aggatgatgctgctggtgcacggccccttgaggttgagcgcgccggtgaggtagttcccc 65270
Query: 1251 ggcgggatgacgatcttctgtacccccgtcgcctcgcacgcgttcttccacgccttgagg 1310
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct: 65269 ggcgggatcacgatcttctgcgtccccgtcgcgttgcacgcgttcttccacgcctgcagc 65210
Query: 1311 atcatcggggtgctgtccgacttgccgtcgcccttggcgcccagctgcgcgatgt 1365
| | || |||||||| | | ||||||||||| || ||||||||||||||||
Sbjct: 65209 acgaacgccgtgctgtcgctcgtcccgtcgcccttcgcccccagctgcgcgatgt 65155
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 66887 tccacgtccttctcgtccttgta 66865
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 67302 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 67243
Query: 323 gg 324
||
Sbjct: 67242 gg 67241
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 5516875 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 5516816
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 5516815 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 5516756
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 5516755 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 5516696
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 5516695 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 5516636
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5516635 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 5516579
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 5516018 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 5515959
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 5515958 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 5515899
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 5515898 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 5515839
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 5515838 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 5515779
Query: 948 ttgctgtt 955
||||||||
Sbjct: 5515778 ttgctgtt 5515771
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 5516547 tccacgtccttctcgtccttgta 5516525
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 5516962 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 5516903
Query: 323 gg 324
||
Sbjct: 5516902 gg 5516901
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 5516875 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 5516816
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 5516815 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 5516756
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 5516755 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 5516696
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 5516695 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 5516636
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5516635 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 5516579
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 5516018 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 5515959
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 5515958 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 5515899
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 5515898 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 5515839
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 5515838 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 5515779
Query: 948 ttgctgtt 955
||||||||
Sbjct: 5515778 ttgctgtt 5515771
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 5516547 tccacgtccttctcgtccttgta 5516525
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 5516962 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 5516903
Query: 323 gg 324
||
Sbjct: 5516902 gg 5516901
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 280 bits (141), Expect = 2e-072
Identities = 258/297 (86%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 5413634 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 5413575
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 5413574 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 5413515
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 5413514 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 5413455
Query: 530 gatgatgatggggtaggagacattgtccatggtgatgccctcgtacaggaacttgctggc 589
||||||||| |||||| || ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 5413454 gatgatgatcgggtagctcacgttgtccatggtgatgccgtcgtacaggaacttggtcgc 5413395
Query: 590 cttgagcgacgacttggagtcctcgtacgacttgatgcgcaggccgttcgtggtgcc 646
| | ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5413394 cctcagctgcgacttggagtcctcgtacgacttgatccggaggccgttcgtggtgcc 5413338
Score = 214 bits (108), Expect = 1e-052
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgcacttgacgccatggatgcggatcatc 767
|||||||||||| ||||||||| || ||||| || |||||| | || ||||| ||||
Sbjct: 5412777 aggctgccgacggagatgccgtgaccggggccacagcggacgccgttgacgcggaccatc 5412718
Query: 768 ttgctcccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatg 827
||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 5412717 ttggtgccggggccgatggagatgcagtcgtcgccggcggcgatggtggtggagctgatg 5412658
Query: 828 gtcacgttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggcc 887
|| | |||| |||||||||||| |||||||||||||||||| |||||||| || || | |
Sbjct: 5412657 gtgatgttggtggagtcgccgacgtggatgccgtccgtgtttgggctgtcccccggcgac 5412598
Query: 888 ttgaccgtcactttgtcgatcagcacgttcttgcactcgaagatgttgaggtggaagaac 947
||| ||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||
Sbjct: 5412597 gtgatggtcaccttgtcgatcaccacgttcttgctctcgtatatgttgaggtggaagaac 5412538
Query: 948 ttgctgtt 955
||||||||
Sbjct: 5412537 ttgctgtt 5412530
Score = 149 bits (75), Expect = 5e-033
Identities = 240/295 (81%)
Strand = Plus / Minus
Query: 1071 ccctgcccgtcgatggtgccgtggccgttgatggacaggttctcgacgttctcgatctcg 1130
||||| ||||||||| |||||||||||||||||| | ||| ||||||| ||| | ||||
Sbjct: 5411868 ccctggccgtcgatgatgccgtggccgttgatggcgaagttgtcgacgtgctccacctcg 5411809
Query: 1131 atccagttcctttggtacgcgctgaggtcgccggtgccgagcaggttgccgtcgagacgg 1190
|||||||| | | ||| ||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 5411808 atccagttggtcttgtaggcgttgaggtcgccggtgccgaggaggttgccgtcgaggcgg 5411749
Query: 1191 atgatgatggaggacttgcaggggcccttcagctccagcccgcccgtcaggtagttgccc 1250
| ||||||| | |||| || ||||| || | ||| |||| || |||||||| |||
Sbjct: 5411748 aggatgatgctgctggtgcacggccccttgaggttgagcgcgccggtgaggtagttcccc 5411689
Query: 1251 ggcgggatgacgatcttctgtacccccgtcgcctcgcacgcgttcttccacgccttgagg 1310
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct: 5411688 ggcgggatcacgatcttctgcgtccccgtcgcgttgcacgcgttcttccacgcctgcagc 5411629
Query: 1311 atcatcggggtgctgtccgacttgccgtcgcccttggcgcccagctgcgcgatgt 1365
| | || |||||||| | | ||||||||||| || ||||||||||||||||
Sbjct: 5411628 acgaacgccgtgctgtcgctcgtcccgtcgcccttcgcccccagctgcgcgatgt 5411574
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgca 742
|||||||||| ||||||||||||||| ||||||||
Sbjct: 1570924 aggctgccgatgctgatgccgtggccggggccgca 1570958
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 838 tggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
|||||||| ||| |||||||||||| ||||| ||||||||
Sbjct: 1571054 tggagtcggcgacgtggatgccgtcggtgttcgggctgtc 1571093
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 678 tccacgtccttctcgtccttgta 700
|||||||||||||||||||||||
Sbjct: 5413306 tccacgtccttctcgtccttgta 5413284
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 5413721 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 5413662
Query: 323 gg 324
||
Sbjct: 5413661 gg 5413660
Score = 44.1 bits (22), Expect = 0.23
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 782 gatggagatgcagtcgtcgccg 803
||||||||||||||||||||||
Sbjct: 1570998 gatggagatgcagtcgtcgccg 1571019
>gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3796, mRNA sequence
Length = 637
Score = 244 bits (123), Expect = 1e-061
Identities = 257/299 (85%), Gaps = 2/299 (0%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 344 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 285
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||||| |||| |
Sbjct: 284 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagacgatgtcggt 225
Query: 470 gacggccaccttggaggcgccggacttgacgcagatgttgttggggcagtacttctggtc 529
|||||| |||||||| | ||||||| | ||||||||||||||||||||||||||||||
Sbjct: 224 gacggcgaccttggacgtgccggacgcggagcagatgttgttggggcagtacttctggtc 165
Query: 530 gatgatgatggggtaggagacatt-gtccatggtgatgccctcgtacaggaacttgctgg 588
||||||||| |||||| || || ||||||||||||||| ||||||||||||||| | |
Sbjct: 164 gatgatgatcgggtagctcacgttcgtccatggtgatgccgtcgtacaggaacttggtcg 105
Query: 589 ccttgagcgacgacttggagtcctcgtacgacttgatgc-gcaggccgttcgtggtgcc 646
|| | ||| ||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct: 104 ccctcagctgcgacttggagtcctcgtacgacttgatccggaagcccgttcgtggtgcc 46
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 431 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 372
Query: 323 gg 324
||
Sbjct: 371 gg 370
>gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40585, mRNA sequence
Length = 449
Score = 113 bits (57), Expect = 3e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 156 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 97
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| |||||| ||||| || |||||| ||||||||||||||| | |||| |
Sbjct: 96 gagcgtgacggcctcgggcgtcgccgacgtgccgacgatgttcttgaagaccatgtcggt 37
Query: 470 gacggccaccttggaggcgccggac 494
|||||| |||||||| | |||||||
Sbjct: 36 gacggcgaccttggacgtgccggac 12
>gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41143, mRNA sequence
Length = 441
Score = 107 bits (54), Expect = 2e-020
Identities = 122/145 (84%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcgcagtt 409
|||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 148 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcgcagtt 89
Query: 410 gagcgtgatggcctccggcgtgttggaggtgccgtggatgttcttgaagacgacgtcgtt 469
|||||||| ||||| ||||| || |||||| ||||||||||||||| | |||| |
Sbjct: 88 gagcgtgacggcctngggcgtcgccgacgtgccgacgatgttcttgaagaccatgtcggt 29
Query: 470 gacggccaccttggaggcgccggac 494
|||||| |||||||| | |||||||
Sbjct: 28 gacggcgaccttggacgtgccggac 4
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 817 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 758
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 757 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 700
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1091 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 1048
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 902 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 843
Query: 749 gcc 751
|||
Sbjct: 842 gcc 840
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 986 ggagtcctcgtacgacttgatccggaggccattggtggt 948
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 1467211 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 1467152
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 1467151 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 1467094
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1467485 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 1467442
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 1467296 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 1467237
Query: 749 gcc 751
|||
Sbjct: 1467236 gcc 1467234
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 1463234 ggggcagtactcctggtcgatgatgatggggt 1463203
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 1462877 gatgtggacgccgtccgtgttggggctgtcgc 1462846
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 1467380 ggagtcctcgtacgacttgatccggaggccattggtggt 1467342
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 1462951 ccggggccgacggagacgcagtcgtcgccg 1462922
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 11419 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 11360
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 11359 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 11302
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11693 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 11650
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 11504 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 11445
Query: 749 gcc 751
|||
Sbjct: 11444 gcc 11442
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 7442 ggggcagtactcctggtcgatgatgatggggt 7411
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 7085 gatgtggacgccgtccgtgttggggctgtcgc 7054
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 11588 ggagtcctcgtacgacttgatccggaggccattggtggt 11550
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 7159 ccggggccgacggagacgcagtcgtcgccg 7130
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 131337 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 131278
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 131277 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 131220
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131611 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 131568
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 131422 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 131363
Query: 749 gcc 751
|||
Sbjct: 131362 gcc 131360
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 127360 ggggcagtactcctggtcgatgatgatggggt 127329
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 127003 gatgtggacgccgtccgtgttggggctgtcgc 126972
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 131506 ggagtcctcgtacgacttgatccggaggccattggtggt 131468
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 127077 ccggggccgacggagacgcagtcgtcgccg 127048
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 32092 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 32033
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 32032 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 31975
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32366 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 32323
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 32177 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 32118
Query: 749 gcc 751
|||
Sbjct: 32117 gcc 32115
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 28115 ggggcagtactcctggtcgatgatgatggggt 28084
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 27758 gatgtggacgccgtccgtgttggggctgtcgc 27727
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 32261 ggagtcctcgtacgacttgatccggaggccattggtggt 32223
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 27832 ccggggccgacggagacgcagtcgtcgccg 27803
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 5323024 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 5322965
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 5322964 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 5322907
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 1633875 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 1633934
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 1633935 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 1633994
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 1633995 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 1634054
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 1634055 gtccgtgttcgggctgtc 1634072
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5323298 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 5323255
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 1644116 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 1644175
Query: 744 ttgacgcc 751
|||||||
Sbjct: 1644176 gtgacgcc 1644183
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 5323109 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 5323050
Query: 749 gcc 751
|||
Sbjct: 5323049 gcc 5323047
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 1643932 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 1643975
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 1633695 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 1633738
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1644271 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 1644309
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 1706677 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 1706714
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 1644854 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 1644891
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 5319047 ggggcagtactcctggtcgatgatgatggggt 5319016
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 5318690 gatgtggacgccgtccgtgttggggctgtcgc 5318659
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 1643739 tggcattcttgcagacggccatggtcttgttg 1643770
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 1633503 tggcattcttgcagacggccatggtcttgttg 1633534
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 1634603 ggtgctgtccgtctttccgtcgcccttgccgcccagct 1634640
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 5323193 ggagtcctcgtacgacttgatccggaggccattggtggt 5323155
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 1644206 ccggggccgatggagatgcaatcatcgccggtgccgatg 1644244
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 5318764 ccggggccgacggagacgcagtcgtcgccg 5318735
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 1634450 gccgagcaggttgccgtcgagctggatgacgatg 1634483
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 23021761 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 23021702
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 23021701 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 23021644
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 19332612 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 19332671
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 19332672 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 19332731
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 19332732 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 19332791
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 19332792 gtccgtgttcgggctgtc 19332809
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23022035 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 23021992
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 19342853 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 19342912
Query: 744 ttgacgcc 751
|||||||
Sbjct: 19342913 gtgacgcc 19342920
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 23021846 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 23021787
Query: 749 gcc 751
|||
Sbjct: 23021786 gcc 23021784
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 19342669 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 19342712
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 19332432 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 19332475
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 19343008 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 19343046
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 19405414 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 19405451
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 19343591 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 19343628
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 23017784 ggggcagtactcctggtcgatgatgatggggt 23017753
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 23017427 gatgtggacgccgtccgtgttggggctgtcgc 23017396
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 19342476 tggcattcttgcagacggccatggtcttgttg 19342507
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 19332240 tggcattcttgcagacggccatggtcttgttg 19332271
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggtaggagac 550
||||||||| | |||||||||||||||||||| ||||||
Sbjct: 17502960 ggggcagtaatgctggtcgatgatgatggggttggagac 17502922
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 19333340 ggtgctgtccgtctttccgtcgcccttgccgcccagct 19333377
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 851 gtggatgccgtccgtgttggggctgtcgcc 880
|||||||||||||||||| |||||||||||
Sbjct: 15623993 gtggatgccgtccgtgtttgggctgtcgcc 15623964
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 23021930 ggagtcctcgtacgacttgatccggaggccattggtggt 23021892
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 19342943 ccggggccgatggagatgcaatcatcgccggtgccgatg 19342981
Score = 46.1 bits (23), Expect = 0.057
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 773 cccggggccgatggagatgcagtcgtcgccg 803
|||||| |||||||||| |||||||||||||
Sbjct: 17502702 cccgggcccgatggagacgcagtcgtcgccg 17502672
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 713 gccgacgctgatgccgtggcctgggccgcacttgacgcc 751
||||| ||||||||||||||| |||||||| |||||||
Sbjct: 15624131 gccgatgctgatgccgtggcccgggccgcaggtgacgcc 15624093
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 23017501 ccggggccgacggagacgcagtcgtcgccg 23017472
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 19333187 gccgagcaggttgccgtcgagctggatgacgatg 19333220
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 107 bits (54), Expect = 2e-020
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatggtggtgctgctgatggtcacg 833
|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
Sbjct: 24001726 ccggggccgatggagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatc 24001667
Query: 834 ttgctggagtcgccgatgtggatgccgtccgtgttggggctgtcgccgggggccttga 891
||| ||||||||| |||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 24001666 ttggaggagtcgcccatgtggatgccgtcggtgttggggctgtcccccggggcgttga 24001609
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 20234469 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 20234528
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 20234529 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 20234588
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 20234589 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 20234648
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 20234649 gtccgtgttcgggctgtc 20234666
Score = 79.8 bits (40), Expect = 4e-012
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24002000 gcagatgctgttggggcagtacttctggtcgatgatgatggggt 24001957
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 20274058 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 20274117
Query: 744 ttgacgcc 751
|||||||
Sbjct: 20274118 gtgacgcc 20274125
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 20244700 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 20244759
Query: 744 ttgacgcc 751
|||||||
Sbjct: 20244760 gtgacgcc 20244767
Score = 69.9 bits (35), Expect = 4e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 689 ctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcacttgac 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 24001811 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtgac 24001752
Query: 749 gcc 751
|||
Sbjct: 24001751 gcc 24001749
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 20273874 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 20273917
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 20244516 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 20244559
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 20234289 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 20234332
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 20244855 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 20244893
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 20274797 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 20274834
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 20245439 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 20245476
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 23997749 ggggcagtactcctggtcgatgatgatggggt 23997718
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 23997392 gatgtggacgccgtccgtgttggggctgtcgc 23997361
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 20273681 tggcattcttgcagacggccatggtcttgttg 20273712
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 20244323 tggcattcttgcagacggccatggtcttgttg 20244354
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 20234097 tggcattcttgcagacggccatggtcttgttg 20234128
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 20274213 ggagtcgcccatgtggatgccatccgtgttcgggctgtc 20274251
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggtaggagac 550
||||||||| | |||||||||||||||||||| ||||||
Sbjct: 17969801 ggggcagtaatgctggtcgatgatgatggggttggagac 17969763
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 20235197 ggtgctgtccgtctttccgtcgcccttgccgcccagct 20235234
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 851 gtggatgccgtccgtgttggggctgtcgcc 880
|||||||||||||||||| |||||||||||
Sbjct: 16112576 gtggatgccgtccgtgtttgggctgtcgcc 16112547
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 605 ggagtcctcgtacgacttgatgcgcaggccgttcgtggt 643
||||||||||||||||||||| || ||||| || |||||
Sbjct: 24001895 ggagtcctcgtacgacttgatccggaggccattggtggt 24001857
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 20274148 ccggggccgatggagatgcaatcatcgccggtgccgatg 20274186
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 20244790 ccggggccgatggagatgcaatcatcgccggtgccgatg 20244828
Score = 46.1 bits (23), Expect = 0.057
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 773 cccggggccgatggagatgcagtcgtcgccg 803
|||||| |||||||||| |||||||||||||
Sbjct: 17969543 cccgggcccgatggagacgcagtcgtcgccg 17969513
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 713 gccgacgctgatgccgtggcctgggccgcacttgacgcc 751
||||| ||||||||||||||| |||||||| |||||||
Sbjct: 16112714 gccgatgctgatgccgtggcccgggccgcaggtgacgcc 16112676
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 23997466 ccggggccgacggagacgcagtcgtcgccg 23997437
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 20235044 gccgagcaggttgccgtcgagctggatgacgatg 20235077
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 100469 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 100528
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 100529 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 100588
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 100589 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 100648
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 100649 gtccgtgttcgggctgtc 100666
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 140058 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 140117
Query: 744 ttgacgcc 751
|||||||
Sbjct: 140118 gtgacgcc 140125
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 110700 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 110759
Query: 744 ttgacgcc 751
|||||||
Sbjct: 110760 gtgacgcc 110767
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 139874 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 139917
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 110516 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 110559
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 100289 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 100332
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 110855 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 110893
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 140797 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 140834
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 111439 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 111476
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 139681 tggcattcttgcagacggccatggtcttgttg 139712
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 110323 tggcattcttgcagacggccatggtcttgttg 110354
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 100097 tggcattcttgcagacggccatggtcttgttg 100128
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 140213 ggagtcgcccatgtggatgccatccgtgttcgggctgtc 140251
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 101197 ggtgctgtccgtctttccgtcgcccttgccgcccagct 101234
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 140148 ccggggccgatggagatgcaatcatcgccggtgccgatg 140186
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 110790 ccggggccgatggagatgcaatcatcgccggtgccgatg 110828
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 101044 gccgagcaggttgccgtcgagctggatgacgatg 101077
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 15660 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 15719
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 15720 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 15779
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 15780 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 15839
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 15840 gtccgtgttcgggctgtc 15857
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 25901 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 25960
Query: 744 ttgacgcc 751
|||||||
Sbjct: 25961 gtgacgcc 25968
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 25717 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 25760
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 15480 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 15523
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 26056 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 26094
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 26639 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 26676
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 25524 tggcattcttgcagacggccatggtcttgttg 25555
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 15288 tggcattcttgcagacggccatggtcttgttg 15319
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 16388 ggtgctgtccgtctttccgtcgcccttgccgcccagct 16425
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 25991 ccggggccgatggagatgcaatcatcgccggtgccgatg 26029
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 16235 gccgagcaggttgccgtcgagctggatgacgatg 16268
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 47979 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 48038
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 48039 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 48098
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 48099 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 48158
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 48159 gtccgtgttcgggctgtc 48176
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 87568 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 87627
Query: 744 ttgacgcc 751
|||||||
Sbjct: 87628 gtgacgcc 87635
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 58210 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 58269
Query: 744 ttgacgcc 751
|||||||
Sbjct: 58270 gtgacgcc 58277
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 87384 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 87427
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 58026 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 58069
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 47799 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 47842
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 58365 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 58403
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 88307 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 88344
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 58949 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 58986
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 87191 tggcattcttgcagacggccatggtcttgttg 87222
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 57833 tggcattcttgcagacggccatggtcttgttg 57864
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 47607 tggcattcttgcagacggccatggtcttgttg 47638
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 87723 ggagtcgcccatgtggatgccatccgtgttcgggctgtc 87761
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 48707 ggtgctgtccgtctttccgtcgcccttgccgcccagct 48744
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 87658 ccggggccgatggagatgcaatcatcgccggtgccgatg 87696
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 58300 ccggggccgatggagatgcaatcatcgccggtgccgatg 58338
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 48554 gccgagcaggttgccgtcgagctggatgacgatg 48587
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 99.6 bits (50), Expect = 4e-018
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 680 cacgtccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggcc 739
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||
Sbjct: 100469 cacgtccttctcgtccttgtatctgcccaggctgccgacgctgatgccgtagccggggcc 100528
Query: 740 gcacttgacgccatggatgcggatcatcttgctcccggggccgatggagatgcagtcgtc 799
||| ||||||| |||| ||| || | | ||||||||||||||||||||||| ||
Sbjct: 100529 gcaggtgacgccggagatgttgatgccctcggtgccggggccgatggagatgcagtcatc 100588
Query: 800 gccgacgccgatggtggtgctgctgatggtcacgttgctggagtcgccgatgtggatgcc 859
|||| ||||||| ||| | ||||| | | ||| |||||||| ||||||||| |
Sbjct: 100589 gccggtgccgatgaccgtgtcgatgatgctgatcttggaggagtcgcatatgtggatgtc 100648
Query: 860 gtccgtgttggggctgtc 877
||||||||| ||||||||
Sbjct: 100649 gtccgtgttcgggctgtc 100666
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 110700 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 110759
Query: 744 ttgacgcc 751
|||||||
Sbjct: 110760 gtgacgcc 110767
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 110516 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 110559
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 100289 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 100332
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 110855 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 110893
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 111439 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 111476
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 110323 tggcattcttgcagacggccatggtcttgttg 110354
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 100097 tggcattcttgcagacggccatggtcttgttg 100128
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| ||| |||||||||||| |||||||||
Sbjct: 101197 ggtgctgtccgtctttccgtcgcccttgccgcccagct 101234
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 110790 ccggggccgatggagatgcaatcatcgccggtgccgatg 110828
Score = 44.1 bits (22), Expect = 0.23
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1166 gccgagcaggttgccgtcgagacggatgatgatg 1199
||||||||||||||||||||| |||||| ||||
Sbjct: 101044 gccgagcaggttgccgtcgagctggatgacgatg 101077
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 71.9 bits (36), Expect = 1e-009
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 684 tccttctcgtccttgtagcgccccaggctgccgacgctgatgccgtggcctgggccgcac 743
||||||||||||||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 869 tccttctcgtccttgtacctgcccaggctaccgacgctgatgccgtggccaggaccgcag 810
Query: 744 ttgacgcc 751
|||||||
Sbjct: 809 gtgacgcc 802
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 500 gcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
|||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 1053 gcagatcttgttggggcagtacttcatgtcgatgatgatggggt 1010
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 839 ggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
||||||||| |||||||||||||||||||| ||||||||
Sbjct: 714 ggagtcgcccatgtggatgccgtccgtgttcgggctgtc 676
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 234 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 197
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 1246 tggcattcttgcagacggccatggtcttgttg 1215
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccgacgccgatg 812
|||||||||||||||||||| || |||||| |||||||
Sbjct: 779 ccggggccgatggagatgcaatcatcgccggtgccgatg 741
>dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1111_B02,
*** SEQUENCING IN PROGRESS ***
Length = 96360
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 51825 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 51869
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 52173 cgatgtggatgccgtccgtgttcgggctg 52201
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 52106 ccgatggagatgcagtcgtcgcc 52128
>dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027O10, full
insert sequence
Length = 1946
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 1307 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 1263
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 959 cgatgtggatgccgtccgtgttcgggctg 931
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 1026 ccgatggagatgcagtcgtcgcc 1004
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 100715 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 100759
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 101063 cgatgtggatgccgtccgtgttcgggctg 101091
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 100996 ccgatggagatgcagtcgtcgcc 101018
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0670E08
Length = 133106
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 41918 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 41962
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 42266 cgatgtggatgccgtccgtgttcgggctg 42294
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 42199 ccgatggagatgcagtcgtcgcc 42221
>gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018116, whole
genome shotgun sequence
Length = 36630
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 7179 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 7223
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 7527 cgatgtggatgccgtccgtgttcgggctg 7555
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 7460 ccgatggagatgcagtcgtcgcc 7482
>ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1947
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 1307 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 1263
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 959 cgatgtggatgccgtccgtgttcgggctg 931
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 1026 ccgatggagatgcagtcgtcgcc 1004
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 14159548 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 14159592
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 14159896 cgatgtggatgccgtccgtgttcgggctg 14159924
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 14159829 ccgatggagatgcagtcgtcgcc 14159851
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 5775368 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 5775412
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 5775716 cgatgtggatgccgtccgtgttcgggctg 5775744
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 5775649 ccgatggagatgcagtcgtcgcc 5775671
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 13377374 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 13377418
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 13377722 cgatgtggatgccgtccgtgttcgggctg 13377750
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 13377655 ccgatggagatgcagtcgtcgcc 13377677
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 499 cgcagatgttgttggggcagtacttctggtcgatgatgatggggt 543
||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 14397635 cgcagttgtagtaggggcagtacttctggtcgatgatgatggggt 14397679
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 847 cgatgtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||| ||||||
Sbjct: 14397983 cgatgtggatgccgtccgtgttcgggctg 14398011
Score = 46.1 bits (23), Expect = 0.057
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 ccgatggagatgcagtcgtcgcc 802
|||||||||||||||||||||||
Sbjct: 14397916 ccgatggagatgcagtcgtcgcc 14397938
>gb|C72992.1|C72992 C72992 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2619_1A, mRNA sequence
Length = 463
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 212 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 175
>gb|C72981.2|C72981 C72981 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591_2A, mRNA sequence
Length = 470
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 215 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 178
>gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014263, whole
genome shotgun sequence
Length = 4633
Score = 60.0 bits (30), Expect = 4e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1319 ggtgctgtccgacttgccgtcgcccttggcgcccagct 1356
||||||||||| |||||||||||||||| |||||||||
Sbjct: 418 ggtgctgtccgtcttgccgtcgcccttgccgcccagct 455
>gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0027E01r, DNA sequence
Length = 842
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 417 ggggcagtactcctggtcgatgatgatggggt 448
>gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017M24f, DNA sequence
Length = 799
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 377 ggggcagtactcctggtcgatgatgatggggt 408
>gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071F05r, DNA
sequence
Length = 432
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 346 ggggcagtactcctggtcgatgatgatggggt 377
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 172 tggcattcttgcagacggccatggtcttgttg 141
>gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1658, mRNA sequence
Length = 356
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 307 tggcgttcttgcagacggccatggtcttgttg 338
|||| |||||||||||||||||||||||||||
Sbjct: 117 tggcattcttgcagacggccatggtcttgttg 86
>dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E08, full
insert sequence
Length = 1456
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggt 543
||||||||||| ||||||||||||||||||||
Sbjct: 1030 ggggcagtactcctggtcgatgatgatggggt 999
Score = 56.0 bits (28), Expect = 6e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 848 gatgtggatgccgtccgtgttggggctgtcgc 879
|||||||| |||||||||||||||||||||||
Sbjct: 673 gatgtggacgccgtccgtgttggggctgtcgc 642
Score = 44.1 bits (22), Expect = 0.23
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| ||||| |||||||||||||
Sbjct: 747 ccggggccgacggagacgcagtcgtcgccg 718
>gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1446, mRNA sequence
Length = 569
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 350 gtacttgatgtcgacgttgacgagctgcacgccctggcatggcaggttgttggcg 404
|||||||| |||||||||| ||||| | ||||||||| |||||||||||||||
Sbjct: 55 gtacttgaggtcgacgttgtgcagctggatgccctggcacggcaggttgttggcg 1
Score = 44.1 bits (22), Expect = 0.23
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 tcagatgcaggcgagctcctttgccaagccgatggacttgccgatggcgttcttgcagac 322
||||| ||||||||||||||| || | | | ||||||||||| | |||||||||||||
Sbjct: 142 tcagacgcaggcgagctccttggcgacgttgctggacttgccggcgacgttcttgcagac 83
Query: 323 gg 324
||
Sbjct: 82 gg 81
>gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02J24 3', mRNA sequence
Length = 801
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 704 ccccaggctgccgacgctgatgccgtggcctgggccgca 742
||||||||| |||| ||||||||||||||| ||||||||
Sbjct: 692 ccccaggctcccgatgctgatgccgtggccggggccgca 730
>dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118O22, full
insert sequence
Length = 1594
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 509 gttggggcagtacttctggtcgatgatgatggggt 543
|||||||||||| |||||||||||||||||||||
Sbjct: 1010 gttggggcagtagctctggtcgatgatgatggggt 976
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| |||||||||||||||||||
Sbjct: 742 ccggggccgacggagatgcagtcgtcgccg 713
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 851 gtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||||||
Sbjct: 665 gtggatgccgtccgtgttggggctg 641
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 704 ccccaggctgccgacgctgatgccgtggcctgggccgca 742
||||||||| |||| ||| ||||||||||| ||||||||
Sbjct: 812 ccccaggctcccgatgcttatgccgtggccggggccgca 774
>dbj|AK106802.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B12, full
insert sequence
Length = 1932
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgca 742
|||||||||| ||||||||||||||| ||||||||
Sbjct: 1160 aggctgccgatgctgatgccgtggccggggccgca 1126
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 838 tggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
|||||||| ||| |||||||||||| ||||| ||||||||
Sbjct: 1030 tggagtcggcgacgtggatgccgtcggtgttcgggctgtc 991
Score = 44.1 bits (22), Expect = 0.23
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 782 gatggagatgcagtcgtcgccg 803
||||||||||||||||||||||
Sbjct: 1086 gatggagatgcagtcgtcgccg 1065
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0576F08
Length = 135314
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 708 aggctgccgacgctgatgccgtggcctgggccgca 742
|||||||||| ||||||||||||||| ||||||||
Sbjct: 134345 aggctgccgatgctgatgccgtggccggggccgca 134379
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 838 tggagtcgccgatgtggatgccgtccgtgttggggctgtc 877
|||||||| ||| |||||||||||| ||||| ||||||||
Sbjct: 134475 tggagtcggcgacgtggatgccgtcggtgttcgggctgtc 134514
Score = 44.1 bits (22), Expect = 0.23
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 782 gatggagatgcagtcgtcgccg 803
||||||||||||||||||||||
Sbjct: 134419 gatggagatgcagtcgtcgccg 134440
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 512 ggggcagtacttctggtcgatgatgatggggtaggagac 550
||||||||| | |||||||||||||||||||| ||||||
Sbjct: 2702323 ggggcagtaatgctggtcgatgatgatggggttggagac 2702285
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 851 gtggatgccgtccgtgttggggctgtcgcc 880
|||||||||||||||||| |||||||||||
Sbjct: 845098 gtggatgccgtccgtgtttgggctgtcgcc 845069
Score = 46.1 bits (23), Expect = 0.057
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 773 cccggggccgatggagatgcagtcgtcgccg 803
|||||| |||||||||| |||||||||||||
Sbjct: 2702065 cccgggcccgatggagacgcagtcgtcgccg 2702035
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 713 gccgacgctgatgccgtggcctgggccgcacttgacgcc 751
||||| ||||||||||||||| |||||||| |||||||
Sbjct: 845236 gccgatgctgatgccgtggcccgggccgcaggtgacgcc 845198
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0501G01
Length = 154561
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 509 gttggggcagtacttctggtcgatgatgatggggt 543
|||||||||||| |||||||||||||||||||||
Sbjct: 119921 gttggggcagtagctctggtcgatgatgatggggt 119955
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 774 ccggggccgatggagatgcagtcgtcgccg 803
|||||||||| |||||||||||||||||||
Sbjct: 120189 ccggggccgacggagatgcagtcgtcgccg 120218
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 851 gtggatgccgtccgtgttggggctg 875
|||||||||||||||||||||||||
Sbjct: 120266 gtggatgccgtccgtgttggggctg 120290
Score = 46.1 bits (23), Expect = 0.057
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 704 ccccaggctgccgacgctgatgccgtggcctgggccgca 742
||||||||| |||| ||| ||||||||||| ||||||||
Sbjct: 120119 ccccaggctcccgatgcttatgccgtggccggggccgca 120157
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,123,058
Number of Sequences: 438736
Number of extensions: 2123058
Number of successful extensions: 16120
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14287
Number of HSP's gapped (non-prelim): 1803
length of query: 1548
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1527
effective length of database: 2,791,206,460
effective search space: 4262172264420
effective search space used: 4262172264420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)