BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.1
(642 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 256 1e-065
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 256 1e-065
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 256 1e-065
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 256 1e-065
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 256 1e-065
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 256 1e-065
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 256 1e-065
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 256 1e-065
gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering s... 224 5e-056
gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm t... 113 1e-022
gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm t... 107 7e-021
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 76 3e-011
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 74 1e-010
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 58 6e-006
dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering s... 54 1e-004
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 50 0.001
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 50 0.001
gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Or... 50 0.001
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.001
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 50 0.001
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (... 48 0.006
gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (... 48 0.006
gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (... 48 0.006
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.023
dbj|AP002819.1| Oryza sativa (japonica cultivar-group) geno... 46 0.023
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 46 0.023
gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) c... 46 0.023
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 46 0.023
ref|NM_192870.1| Oryza sativa (japonica cultivar-group), p... 46 0.023
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 46 0.023
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 46 0.023
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (j... 44 0.092
dbj|AK106802.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.092
dbj|AP004886.3| Oryza sativa (japonica cultivar-group) geno... 44 0.092
ref|XM_463996.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.092
dbj|AP004150.2| Oryza sativa (japonica cultivar-group) geno... 44 0.092
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 44 0.092
dbj|AK110223.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AP002869.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AACV01000929.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NM_183847.1| Oryza sativa (japonica cultivar-group), p... 42 0.36
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 42 0.36
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1225_F07
Length = 142772
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 139641 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 139700
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 139701 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 139760
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 139761 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 139820
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 139821 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 139880
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 139881 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 139937
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 139585 ggtacaaggacgagaaggacgtggaggac 139613
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 139962 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 140021
Query: 471 tga 473
|||
Sbjct: 140022 tga 140024
>gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003552, whole
genome shotgun sequence
Length = 23711
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 1008 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 1067
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 1068 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 1127
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 1128 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 1187
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 1188 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 1247
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1248 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 1304
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 952 ggtacaaggacgagaaggacgtggaggac 980
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 1329 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 1388
Query: 471 tga 473
|||
Sbjct: 1389 tga 1391
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 886 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 945
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 946 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 1005
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 1006 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 1065
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 1066 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 1125
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1126 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 1182
Score = 81.8 bits (41), Expect = 4e-013
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 6 cacggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggac 62
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 802 cacggcatctccgtcggcagcctcggccggtacaaggacgagaaggacgtggaggac 858
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 1207 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 1266
Query: 471 tga 473
|||
Sbjct: 1267 tga 1269
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 785410 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 785469
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 785470 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 785529
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 785530 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 785589
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 785590 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 785649
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 785650 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 785706
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 785354 ggtacaaggacgagaaggacgtggaggac 785382
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 785731 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 785790
Query: 471 tga 473
|||
Sbjct: 785791 tga 785793
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1524_D08
Length = 143046
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 66919 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 66978
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 66979 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 67038
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 67039 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 67098
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 67099 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 67158
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 67159 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 67215
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 66863 ggtacaaggacgagaaggacgtggaggac 66891
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 67240 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 67299
Query: 471 tga 473
|||
Sbjct: 67300 tga 67302
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5516579 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5516638
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 5516639 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5516698
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5516699 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5516758
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5516759 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5516818
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5516819 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5516875
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 5516523 ggtacaaggacgagaaggacgtggaggac 5516551
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 5516900 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 5516959
Query: 471 tga 473
|||
Sbjct: 5516960 tga 5516962
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5516579 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5516638
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 5516639 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5516698
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5516699 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5516758
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5516759 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5516818
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5516819 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5516875
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 5516523 ggtacaaggacgagaaggacgtggaggac 5516551
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 5516900 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 5516959
Query: 471 tga 473
|||
Sbjct: 5516960 tga 5516962
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 256 bits (129), Expect = 1e-065
Identities = 255/297 (85%)
Strand = Plus / Plus
Query: 90 ggcaccaccaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 149
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5413338 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5413397
Query: 150 accaagttcctgtaccaggacgtcaccatggacaacgtctcctaccccatcatcatagac 209
||||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||
Sbjct: 5413398 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5413457
Query: 210 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 269
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5413458 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5413517
Query: 270 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 329
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5413518 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5413577
Query: 330 tgcgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5413578 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5413634
Score = 58.0 bits (29), Expect = 6e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 34 ggtacaaggacgagaaggacgtggaggac 62
|||||||||||||||||||||||||||||
Sbjct: 5413282 ggtacaaggacgagaaggacgtggaggac 5413310
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 5413659 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 5413718
Query: 471 tga 473
|||
Sbjct: 5413719 tga 5413721
Score = 44.1 bits (22), Expect = 0.092
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcct 28
||||||||||||||| ||||||||||
Sbjct: 1570949 ggccacggcatcagcatcggcagcct 1570924
>gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3796, mRNA sequence
Length = 637
Score = 224 bits (113), Expect = 5e-056
Identities = 237/277 (85%), Gaps = 1/277 (0%)
Strand = Plus / Plus
Query: 111 atcaagtcgtacgaggactccaagtcgtcgctcaaggccaccaagttcctgtaccaggac 170
||||||||||||||||||||||||||| ||| | ||| ||||||||||||||| | | |
Sbjct: 68 atcaagtcgtacgaggactccaagtcgcagctgagggcgaccaagttcctgtacgacggc 127
Query: 171 gtcaccatggac-aacgtctcctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 128 atcaccatggacgaacgtgagctacccgatcatcatcgaccagaagtactgccccaacaa 187
Query: 230 catctgcgtcaagtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacat 289
||||||| | ||||||| | |||||||| ||||||| |||| ||||||||||||||||
Sbjct: 188 catctgctccgcgtccggcacgtccaaggtcgccgtcaccgacatcgtcttcaagaacat 247
Query: 290 ccacggcacctccaacacgccggaggccatcacgctcaactgcgccaacaacctgccctg 349
| |||||| || ||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct: 248 cgtcggcacgtcggcgacgcccgaggccgtcacgctcaactgcgccaacaacctgccgtg 307
Query: 350 ccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||| | ||||| |||||||||| ||||||||
Sbjct: 308 ccagggcatccagctgcacaacgtcgacctcaagtac 344
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 369 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 428
Query: 471 tga 473
|||
Sbjct: 429 tga 431
>gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40585, mRNA sequence
Length = 449
Score = 113 bits (57), Expect = 1e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 242 gtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctc 301
||||||| | |||||||| ||||||| |||| | ||||||||||||||| |||||| ||
Sbjct: 12 gtccggcacgtccaaggtcgccgtcaccgacatggtcttcaagaacatcgtcggcacgtc 71
Query: 302 caacacgccggaggccatcacgctcaactgcgccaacaacctgccctgccagggcgtgca 361
||||| |||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 72 ggcgacgcccgaggccgtcacgctcaactgcgccaacaacctgccgtgccagggcatcca 131
Query: 362 gctcatcaacgtcgacatcaagtac 386
||| |||||||||| ||||||||
Sbjct: 132 gctgcacaacgtcgacctcaagtac 156
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 453 aaggagctcgcctgcgtctga 473
|||||||||||||||||||||
Sbjct: 223 aaggagctcgcctgcgtctga 243
>gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41143, mRNA sequence
Length = 441
Score = 107 bits (54), Expect = 7e-021
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 242 gtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctc 301
||||||| | |||||||| ||||||| |||| | ||||||||||||||| |||||| ||
Sbjct: 4 gtccggcacgtccaaggtcgccgtcaccgacatggtcttcaagaacatcgtcggcacgtc 63
Query: 302 caacacgccggaggccatcacgctcaactgcgccaacaacctgccctgccagggcgtgca 361
||||| ||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 64 ggcgacgcccnaggccgtcacgctcaactgcgccaacaacctgccgtgccagggcatcca 123
Query: 362 gctcatcaacgtcgacatcaagtac 386
||| |||||||||| ||||||||
Sbjct: 124 gctgcacaacgtcgacctcaagtac 148
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 453 aaggagctcgcctgcgtctga 473
|||||||||||||||||||||
Sbjct: 215 aaggagctcgcctgcgtctga 235
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 820 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 869
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 1010 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1053
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 1214 acaacaagaccatggccgtctgcaagaatgcca 1246
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 140107 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 140058
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 110749 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 110700
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 100518 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 100469
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 139917 accccatcatcatcgacatgaagtactgccccaacaagatctgc 139874
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 110559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 110516
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 100332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 100289
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 139713 acaacaagaccatggccgtctgcaagaatgcca 139681
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 110355 acaacaagaccatggccgtctgcaagaatgcca 110323
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 100129 acaacaagaccatggccgtctgcaagaatgcca 100097
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 25950 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 25901
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 15709 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 15660
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 25760 accccatcatcatcgacatgaagtactgccccaacaagatctgc 25717
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 15523 accccatcatcatcgacatgaagtactgccccaacaagatctgc 15480
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 25556 acaacaagaccatggccgtctgcaagaatgcca 25524
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 15320 acaacaagaccatggccgtctgcaagaatgcca 15288
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 87617 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 87568
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 58259 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 58210
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 48028 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 47979
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 87427 accccatcatcatcgacatgaagtactgccccaacaagatctgc 87384
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 58069 accccatcatcatcgacatgaagtactgccccaacaagatctgc 58026
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 47842 accccatcatcatcgacatgaagtactgccccaacaagatctgc 47799
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 87223 acaacaagaccatggccgtctgcaagaatgcca 87191
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 57865 acaacaagaccatggccgtctgcaagaatgcca 57833
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 47639 acaacaagaccatggccgtctgcaagaatgcca 47607
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 110749 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 110700
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 100518 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 100469
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 110559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 110516
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 100332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 100289
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 110355 acaacaagaccatggccgtctgcaagaatgcca 110323
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 100129 acaacaagaccatggccgtctgcaagaatgcca 100097
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1644165 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 1644116
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1633924 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 1633875
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 5323238 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 5323297
Query: 236 c 236
|
Sbjct: 5323298 c 5323298
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 5323065 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 5323109
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 1643975 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1643932
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 1633738 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1633695
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 5323155 accaccaatggcctccggatcaagtcgtacgaggactcc 5323193
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 1643771 acaacaagaccatggccgtctgcaagaatgcca 1643739
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 1633535 acaacaagaccatggccgtctgcaagaatgcca 1633503
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 5319016 accccatcatcatcgaccaggagtactgcccc 5319047
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 19342902 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 19342853
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 19332661 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 19332612
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 23021975 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 23022034
Query: 236 c 236
|
Sbjct: 23022035 c 23022035
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 23021802 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 23021846
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 19342712 accccatcatcatcgacatgaagtactgccccaacaagatctgc 19342669
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 19332475 accccatcatcatcgacatgaagtactgccccaacaagatctgc 19332432
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 23021892 accaccaatggcctccggatcaagtcgtacgaggactcc 23021930
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 17502918 caacgtctccaaccccatcatcatcgaccagcattactgcccc 17502960
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 19342508 acaacaagaccatggccgtctgcaagaatgcca 19342476
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 19332272 acaacaagaccatggccgtctgcaagaatgcca 19332240
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 23017753 accccatcatcatcgaccaggagtactgcccc 23017784
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 20274107 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 20274058
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaagga 52
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 20244749 ggccacggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 20244700
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 7 acggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 20234518 acggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 20234469
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 24001940 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 24001999
Query: 236 c 236
|
Sbjct: 24002000 c 24002000
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 24001767 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 24001811
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 20273917 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20273874
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 20244559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20244516
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgc 236
||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 20234332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20234289
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 24001857 accaccaatggcctccggatcaagtcgtacgaggactcc 24001895
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 17969759 caacgtctccaaccccatcatcatcgaccagcattactgcccc 17969801
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 20273713 acaacaagaccatggccgtctgcaagaatgcca 20273681
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 20244355 acaacaagaccatggccgtctgcaagaatgcca 20244323
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 20234129 acaacaagaccatggccgtctgcaagaatgcca 20234097
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 23997718 accccatcatcatcgaccaggagtactgcccc 23997749
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1031 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 1090
Query: 236 c 236
|
Sbjct: 1091 c 1091
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 858 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 902
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 948 accaccaatggcctccggatcaagtcgtacgaggactcc 986
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1467425 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 1467484
Query: 236 c 236
|
Sbjct: 1467485 c 1467485
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 1467252 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 1467296
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 1467342 accaccaatggcctccggatcaagtcgtacgaggactcc 1467380
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 1463203 accccatcatcatcgaccaggagtactgcccc 1463234
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 11633 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 11692
Query: 236 c 236
|
Sbjct: 11693 c 11693
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 11460 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 11504
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 11550 accaccaatggcctccggatcaagtcgtacgaggactcc 11588
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 7411 accccatcatcatcgaccaggagtactgcccc 7442
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 131551 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 131610
Query: 236 c 236
|
Sbjct: 131611 c 131611
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 131378 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 131422
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 131468 accaccaatggcctccggatcaagtcgtacgaggactcc 131506
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 127329 accccatcatcatcgaccaggagtactgcccc 127360
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 176 catggacaacgtctcctaccccatcatcatagaccagaagtactgccccaacaacatctg 235
||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 32306 catggaccacgtcgacaaccccatcatcatcgaccagaagtactgccccaacagcatctg 32365
Query: 236 c 236
|
Sbjct: 32366 c 32366
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggcggtacaaggacgag 47
||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 32133 ggccacggcatcagcatcggcagcctcggccggtacaaggacgag 32177
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 accaccaacggcctgcgcatcaagtcgtacgaggactcc 131
|||||||| ||||| || |||||||||||||||||||||
Sbjct: 32223 accaccaatggcctccggatcaagtcgtacgaggactcc 32261
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgcccc 224
||||||||||||| |||||| |||||||||||
Sbjct: 28084 accccatcatcatcgaccaggagtactgcccc 28115
>dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1111_B02,
*** SEQUENCING IN PROGRESS ***
Length = 96360
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 51869 accccatcatcatcgaccagaagtactgcccctactacaactgcg 51825
>dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027O10, full
insert sequence
Length = 1946
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 1263 accccatcatcatcgaccagaagtactgcccctactacaactgcg 1307
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 100759 accccatcatcatcgaccagaagtactgcccctactacaactgcg 100715
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0670E08
Length = 133106
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 41962 accccatcatcatcgaccagaagtactgcccctactacaactgcg 41918
>gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018116, whole
genome shotgun sequence
Length = 36630
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 7223 accccatcatcatcgaccagaagtactgcccctactacaactgcg 7179
>ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1947
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 1263 accccatcatcatcgaccagaagtactgcccctactacaactgcg 1307
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 14159592 accccatcatcatcgaccagaagtactgcccctactacaactgcg 14159548
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 5775412 accccatcatcatcgaccagaagtactgcccctactacaactgcg 5775368
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 13377418 accccatcatcatcgaccagaagtactgcccctactacaactgcg 13377374
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaacaacatctgcg 237
||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct: 14397679 accccatcatcatcgaccagaagtactgcccctactacaactgcg 14397635
>gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1446, mRNA sequence
Length = 569
Score = 54.0 bits (27), Expect = 1e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 332 cgccaacaacctgccctgccagggcgtgcagctcatcaacgtcgacatcaagtac 386
||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1 cgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 55
Score = 46.1 bits (23), Expect = 0.023
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 411 tccgtctgcaagaacgccatcggcaagtccattggcatggcgaaggagctcgcctgcgtc 470
|||||||||||||||| | ||||||||||| | | || ||||||||||||||||||
Sbjct: 80 tccgtctgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtc 139
Query: 471 tga 473
|||
Sbjct: 140 tga 142
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 2702281 caacgtctccaaccccatcatcatcgaccagcattactgcccc 2702323
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0071G09
Length = 169148
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 36065 caacgtctccaaccccatcatcatcgaccagcattactgcccc 36107
>gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014109, whole
genome shotgun sequence
Length = 47054
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 16918 caacgtctccaaccccatcatcatcgaccagcattactgcccc 16876
>gb|CH401214.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000051
genomic scaffold, whole genome shotgun sequence
Length = 1060799
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 182 caacgtctcctaccccatcatcatagaccagaagtactgcccc 224
|||||||||| ||||||||||||| |||||| | |||||||||
Sbjct: 998402 caacgtctccaaccccatcatcatcgaccagcattactgcccc 998444
>gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1822, mRNA sequence
Length = 675
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 277 cggcacctccaacacgccggaggcc 301
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 380 gacaacaagaccatggccgtctgcaccaacgcca 413
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 140 acaacaagaccatggccgtctgcaagaatgcca 172
>gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1658, mRNA sequence
Length = 356
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 397 acaacaagaccatgtccgtctgcaagaacgcca 429
|||||||||||||| ||||||||||||| ||||
Sbjct: 85 acaacaagaccatggccgtctgcaagaatgcca 117
>dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D20, full
insert sequence
Length = 1459
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 1093 cggcacctccaacacgccggaggcc 1117
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 809 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 863
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 1196 gacaacaagaccatggccgtctgcaccaacgcca 1229
>gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001330, whole
genome shotgun sequence
Length = 59730
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 25033 cggcacctccaacacgccggaggcc 25009
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 25317 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 25263
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 24930 gacaacaagaccatggccgtctgcaccaacgcca 24897
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 18428028 cggcacctccaacacgccggaggcc 18428004
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaac 227
||||||||||||| ||||||| ||||||||||||
Sbjct: 24975552 accccatcatcatcgaccagagctactgccccaac 24975518
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 18428312 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 18428258
Score = 46.1 bits (23), Expect = 0.023
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cacggcatcagcgtcggcagcctgggg 32
|||||||||||| ||||||||||||||
Sbjct: 10827103 cacggcatcagcatcggcagcctgggg 10827129
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 18427925 gacaacaagaccatggccgtctgcaccaacgcca 18427892
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggg 31
||||||||||||||| ||||| |||||||
Sbjct: 12684496 ggccacggcatcagcatcggcggcctggg 12684524
>ref|XM_463287.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1212
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 1032 cggcacctccaacacgccggaggcc 1056
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 748 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 802
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 1135 gacaacaagaccatggccgtctgcaccaacgcca 1168
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 1346260 cggcacctccaacacgccggaggcc 1346236
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaac 227
||||||||||||| ||||||| ||||||||||||
Sbjct: 7893784 accccatcatcatcgaccagagctactgccccaac 7893750
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 1346544 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 1346490
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 1346157 gacaacaagaccatggccgtctgcaccaacgcca 1346124
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1108H10
Length = 136357
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 106645 cggcacctccaacacgccggaggcc 106621
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 106929 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 106875
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 106542 gacaacaagaccatggccgtctgcaccaacgcca 106509
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 1383248 cggcacctccaacacgccggaggcc 1383224
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaac 227
||||||||||||| ||||||| ||||||||||||
Sbjct: 7888534 accccatcatcatcgaccagagctactgccccaac 7888500
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 1383532 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 1383478
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 1383145 gacaacaagaccatggccgtctgcaccaacgcca 1383112
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 293 cggcacctccaacacgccggaggcc 317
|||||||||||||||||||||||||
Sbjct: 18008371 cggcacctccaacacgccggaggcc 18008347
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 193 accccatcatcatagaccagaagtactgccccaac 227
||||||||||||| ||||||| ||||||||||||
Sbjct: 24513657 accccatcatcatcgaccagagctactgccccaac 24513623
Score = 46.1 bits (23), Expect = 0.023
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atcagcgtcggcagcctggggcggtacaaggacgagaaggacgtggaggacgtga 66
|||||||| || ||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 18008655 atcagcgtggggtgcctgggcaggttcaaggacgagaaggacgtgacggacgtga 18008601
Score = 46.1 bits (23), Expect = 0.023
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cacggcatcagcgtcggcagcctgggg 32
|||||||||||| ||||||||||||||
Sbjct: 11043308 cacggcatcagcatcggcagcctgggg 11043334
Score = 44.1 bits (22), Expect = 0.092
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 396 gacaacaagaccatgtccgtctgcaagaacgcca 429
||||||||||||||| ||||||||| |||||||
Sbjct: 18008268 gacaacaagaccatggccgtctgcaccaacgcca 18008235
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggg 31
||||||||||||||| ||||| |||||||
Sbjct: 12642489 ggccacggcatcagcatcggcggcctggg 12642517
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 874,643
Number of Sequences: 438736
Number of extensions: 874643
Number of successful extensions: 8355
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7620
Number of HSP's gapped (non-prelim): 723
length of query: 642
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 621
effective length of database: 2,791,206,460
effective search space: 1733339211660
effective search space used: 1733339211660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)