BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115079.2.1
(636 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184632.1|BP184632 BP184632 pNS rice panicle cDNA, germ... 327 4e-087
dbj|AK105510.1| Oryza sativa (japonica cultivar-group) cDNA... 327 4e-087
gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C1... 327 4e-087
gb|AACV01021821.1| Oryza sativa (japonica cultivar-group) c... 327 4e-087
ref|NM_197070.1| Oryza sativa (japonica cultivar-group) ant... 327 4e-087
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 327 4e-087
dbj|AB110182.1| Oryza sativa (japonica cultivar-group) mRNA... 327 4e-087
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 327 4e-087
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 327 4e-087
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 327 4e-087
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 327 4e-087
gb|C99729.1|C99729 C99729 Rice panicle (longer than 10cm) O... 317 4e-084
emb|X91811.1|OSCHSLKGN O.sativa mRNA for chalcone synthase-... 287 4e-075
gb|AU162247.1|AU162247 AU162247 Rice panicle (longer than 1... 244 5e-062
gb|AU164145.1|AU164145 AU164145 Rice panicle (longer than 1... 105 3e-020
gb|C99520.1|C99520 C99520 Rice panicle (longer than 10cm) O... 86 3e-014
gb|AQ362315.2|AQ362315 nbxb0049K20r CUGI Rice BAC Library O... 42 0.36
dbj|AP004738.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AACV01012490.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.36
dbj|AP005913.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
>gb|BP184632.1|BP184632 BP184632 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 14FPB004,
mRNA sequence
Length = 667
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 469 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 410
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 409 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 350
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 349 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 290
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 289 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 230
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 229 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 170
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 169 ccttctatacggttttcaatcttttcgggcaaa 137
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 593 agacatctatgctccttatgagatgtttc 565
>dbj|AK105510.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E05, full
insert sequence
Length = 1455
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1233 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 1174
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 1173 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 1114
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1113 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 1054
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 1053 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 994
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 993 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 934
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 933 ccttctatacggttttcaatcttttcgggcaaa 901
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 1357 agacatctatgctccttatgagatgtttc 1329
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
sequence
Length = 148816
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Plus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 128839 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 128898
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 128899 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 128958
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 128959 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 129018
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 129019 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 129078
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 129079 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 129138
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 129139 ccttctatacggttttcaatcttttcgggcaaa 129171
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 128715 agacatctatgctccttatgagatgtttc 128743
>gb|AACV01021821.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021821, whole
genome shotgun sequence
Length = 26294
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 25631 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 25572
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 25571 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 25512
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 25511 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 25452
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 25451 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 25392
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 25391 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 25332
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 25331 ccttctatacggttttcaatcttttcgggcaaa 25299
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 25755 agacatctatgctccttatgagatgtttc 25727
>ref|NM_197070.1| Oryza sativa (japonica cultivar-group) anther-specific protein YY2
(OSJNBa0029C15.7), mRNA
Length = 1422
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1160 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 1101
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 1100 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 1041
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1040 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 981
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 980 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 921
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 920 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 861
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 860 ccttctatacggttttcaatcttttcgggcaaa 828
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 1284 agacatctatgctccttatgagatgtttc 1256
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 4535633 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 4535574
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 4535573 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 4535514
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 4535513 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 4535454
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 4535453 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 4535394
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 4535393 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 4535334
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 4535333 ccttctatacggttttcaatcttttcgggcaaa 4535301
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 4535757 agacatctatgctccttatgagatgtttc 4535729
>dbj|AB110182.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
complete cds, clone: 14FPB004
Length = 1404
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1222 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 1163
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 1162 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 1103
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1102 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 1043
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 1042 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 983
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 982 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 923
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 922 ccttctatacggttttcaatcttttcgggcaaa 890
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 1346 agacatctatgctccttatgagatgtttc 1318
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 5746310 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 5746251
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 5746250 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 5746191
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 5746190 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 5746131
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 5746130 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 5746071
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 5746070 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 5746011
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 5746010 ccttctatacggttttcaatcttttcgggcaaa 5745978
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 5746434 agacatctatgctccttatgagatgtttc 5746406
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 16612104 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 16612045
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 16612044 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 16611985
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 16611984 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 16611925
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 16611924 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 16611865
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 16611864 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 16611805
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 16611804 ccttctatacggttttcaatcttttcgggcaaa 16611772
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 16612228 agacatctatgctccttatgagatgtttc 16612200
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 17803202 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 17803143
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 17803142 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 17803083
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 17803082 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 17803023
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 17803022 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 17802963
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 17802962 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 17802903
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 17802902 ccttctatacggttttcaatcttttcgggcaaa 17802870
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 17803326 agacatctatgctccttatgagatgtttc 17803298
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 327 bits (165), Expect = 4e-087
Identities = 291/333 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 17812455 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 17812396
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 17812395 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 17812336
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 17812335 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 17812276
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 17812275 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 17812216
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 17812215 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 17812156
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| ||| |||||||||| || ||||||
Sbjct: 17812155 ccttctatacggttttcaatcttttcgggcaaa 17812123
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 17812579 agacatctatgctccttatgagatgtttc 17812551
>gb|C99729.1|C99729 C99729 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E21179_4Z, mRNA sequence
Length = 761
Score = 317 bits (160), Expect = 4e-084
Identities = 282/323 (87%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 480 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 421
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 420 tcttcccttatcatccctttcttcaactcatccctcaaatactccaacacatagaagacg 361
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| |||||||||||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 360 gtgttgctgctcacattaccatagttcatcagggcctttctactgatcttgagcttctct 301
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
||||| |||| |||||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 300 ggctggagttcaaggcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 241
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 240 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 181
Query: 604 ccttctatgcggctttcaatctt 626
||||| || ||| ||||||||||
Sbjct: 180 ccttcnatacggttttcaatctt 158
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 604 agacatctatgctccttatgagatgtttc 576
>emb|X91811.1|OSCHSLKGN O.sativa mRNA for chalcone synthase-like protein
Length = 1577
Score = 287 bits (145), Expect = 4e-075
Identities = 286/333 (85%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1212 cctcgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcagtccccat 1153
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||| ||||||||| ||||| |||| || ||||||| |||||||||||
Sbjct: 1152 tcttcccttatcatccctttcttcaactcagcccttaaatactccaacacatagaagacg 1093
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|| ||||||| ||||| ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1092 gtgttgctgcgtacattaccatagttcatcagggcctttctactgatcttgagcttctct 1033
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
|||| |||| || ||| | ||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 1032 cgctggagttcaaagcaaacctctagcctgttcagtattgctggaccaccaggatgcaca 973
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
||||| |||| ||| ||||| ||||||||||| ||| | | |||||| |||||||||||
Sbjct: 972 gcccagaatacatcattgaactcctttatcccaacccgatccatgagtgtcctgcagaac 913
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| |||||||||||||| || ||||||
Sbjct: 912 ccttctatacggctttcaatcttttcgggcaaa 880
>gb|AU162247.1|AU162247 AU162247 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E21179, mRNA sequence
Length = 527
Score = 244 bits (123), Expect = 5e-062
Identities = 225/259 (86%)
Strand = Plus / Minus
Query: 378 ccctttctttaactcgtccctcaagtactccagcacatagaagattgtattgctgctcac 437
||||||||| ||||| |||||||| ||||||| ||||||||||| || |||||||||||
Sbjct: 521 ccctttcttcaactcatccctcaaatactccaacacatagaagacggtgttgctgctcac 462
Query: 438 atttccatagttcattaaggcttttctgctaatcttgagcttctctggctgaagtttaag 497
||| ||||||||||| | ||| ||||| || |||||||||||||||||||| |||| |||
Sbjct: 461 attaccatagttcatcagggcctttctactgatcttgagcttctctggctggagttcaag 402
Query: 498 gcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaatatatc 557
||| | ||| |||||||||| ||||||||| |||||||||||||||||||| |||| |||
Sbjct: 401 gcaaacctctagcctgttcagtattgctggaccaccaggatgcacagcccagaatacatc 342
Query: 558 gttgaaatcctttatccctacctggttcatgagagtcctgcagaaaccttctatgcggct 617
||||| ||||||||||| ||| | | |||||| ||||||||||| |||||||| ||| |
Sbjct: 341 attgaactcctttatcccaacccgatccatgagtgtcctgcagaacccttctatacggtt 282
Query: 618 ttcaatcttctcaggcaaa 636
||||||||| || ||||||
Sbjct: 281 ttcaatcttttcgggcaaa 263
>gb|AU164145.1|AU164145 AU164145 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20327, mRNA sequence
Length = 423
Score = 105 bits (53), Expect = 3e-020
Identities = 114/132 (86%), Gaps = 2/132 (1%)
Strand = Plus / Minus
Query: 507 aagcctgttcaa-tattgctggtccaccaggatgcacagcccaa-aatatatcgttgaaa 564
||||||| |||| ||||||||| ||||||||||||||||||| | |||| ||| |||||
Sbjct: 394 aagcctgntcaagtattgctggaccaccaggatgcacagccccagaatacatcattgaac 335
Query: 565 tcctttatccctacctggttcatgagagtcctgcagaaaccttctatgcggctttcaatc 624
||||||||||| ||| | | |||||| ||||||||||| |||||||| ||| ||||||||
Sbjct: 334 tcctttatcccaacccgatccatgagtgtcctgcagaacccttctatacggttttcaatc 275
Query: 625 ttctcaggcaaa 636
|| || ||||||
Sbjct: 274 ttttcgggcaaa 263
>gb|C99520.1|C99520 C99520 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20327_8Z, mRNA sequence
Length = 353
Score = 85.7 bits (43), Expect = 3e-014
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccca 362
||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 72 cctcgaactagcattccttcaaag-tgatgcctgggccaaaagccaagatcagtcccca 15
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 204 agacatctatgctctttatgtgatgtttc 232
|||||||||||||| ||||| ||||||||
Sbjct: 196 agacatctatgctccttatgagatgtttc 168
>gb|AQ362315.2|AQ362315 nbxb0049K20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0049K20r, DNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 335 ctctttatgtgatgtttctgt 315
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0090D06
Length = 174500
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 43228 ctctttatgtgatgtttctgt 43208
>gb|AACV01012490.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012490, whole
genome shotgun sequence
Length = 16538
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 7201 ctctttatgtgatgtttctgt 7181
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 247444 ctctttatgtgatgtttctgt 247424
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0005A05
Length = 162520
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 150594 ctctttatgtgatgtttctgt 150574
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 6771418 ctctttatgtgatgtttctgt 6771438
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 24071731 ctctttatgtgatgtttctgt 24071751
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 215 ctctttatgtgatgtttctgt 235
|||||||||||||||||||||
Sbjct: 4555864 ctctttatgtgatgtttctgt 4555844
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 989,826
Number of Sequences: 438736
Number of extensions: 989826
Number of successful extensions: 5155
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5019
Number of HSP's gapped (non-prelim): 134
length of query: 636
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 615
effective length of database: 2,791,206,460
effective search space: 1716591972900
effective search space used: 1716591972900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)