BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3107376.2.2
(1851 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP003909.3| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) c... 70 5e-009
ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 70 5e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 5e-009
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
gb|AQ573853.1|AQ573853 nbxb0085A03r CUGI Rice BAC Library O... 64 3e-007
gb|AQ691042.1|AQ691042 nbxb0086M20r CUGI Rice BAC Library O... 64 3e-007
gb|AQ795917.1|AQ795917 nbxb0058F03f CUGI Rice BAC Library O... 64 3e-007
gb|CB637562.1|CB637562 OSJNEa04G21.f OSJNEa Oryza sativa (j... 64 3e-007
dbj|AK060739.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
dbj|AK066010.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
gb|AC132003.4| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
ref|NT_107125.1| Oryza sativa (japonica cultivar-group) 64 3e-007
gb|AACV01023023.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-006
gb|CB640129.1|CB640129 OSJNEa13G03.f OSJNEa Oryza sativa (j... 60 5e-006
emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC O... 54 3e-004
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 54 3e-004
gb|AACV01025036.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|CB656256.1|CB656256 OSJNEc10G09.f OSJNEc Oryza sativa (j... 52 0.001
dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
gb|CZ553013.1|CZ553013 M0006767 AS_TRIM_TDNA_B1 Oryza sativ... 50 0.004
gb|CB666352.1|CB666352 OSJNEd13D14.f OSJNEd Oryza sativa (j... 50 0.004
dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
gb|AACV01010184.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
ref|XM_473307.1| Oryza sativa (japonica cultivar-group), p... 50 0.004
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 50 0.004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromoso... 50 0.004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (... 48 0.017
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 48 0.017
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 48 0.017
gb|AACV01000500.1| Oryza sativa (japonica cultivar-group) c... 48 0.017
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 48 0.017
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.017
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 48 0.017
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 48 0.017
ref|NM_188579.1| Oryza sativa (japonica cultivar-group), p... 48 0.017
ref|NM_188581.1| Oryza sativa (japonica cultivar-group), p... 48 0.017
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 48 0.017
dbj|AP003434.2| Oryza sativa (japonica cultivar-group) geno... 48 0.017
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.017
emb|AL607097.1|OSJN01006 Oryza sativa (japonica cultivar-gr... 46 0.068
dbj|AK061866.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK063747.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK099468.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK100062.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK105993.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK120213.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AP005621.2| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 46 0.068
dbj|AP006176.3| Oryza sativa (japonica cultivar-group) geno... 46 0.068
dbj|AP006446.3| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|AACV01000601.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01011951.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01012852.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01019290.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01022478.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
dbj|AP002842.3| Oryza sativa (japonica cultivar-group) geno... 46 0.068
ref|NM_193326.1| Oryza sativa (japonica cultivar-group), p... 46 0.068
ref|XM_475110.1| Oryza sativa (japonica cultivar-group), p... 46 0.068
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.068
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 46 0.068
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 46 0.068
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 46 0.068
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CH401237.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.068
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.068
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|AC135794.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|AU081542.1|AU081542 AU081542 Rice callus Oryza sativa (j... 44 0.27
gb|CB664695.1|CB664695 OSJNEd10J03.f OSJNEd Oryza sativa (j... 44 0.27
dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK101530.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AP004461.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP004769.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.27
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 44 0.27
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP004583.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
gb|AACV01003180.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01013712.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01017273.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
ref|XM_480120.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 44 0.27
dbj|AP003990.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP004000.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 44 0.27
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.27
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1300_E01
Length = 103022
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 68638 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 68579
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 68578 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 68519
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 68518 gggagacatgtgggagggagccgacgaggtg 68488
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 79392 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 79333
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 79332 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 79273
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 79272 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 79230
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 69028 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 68969
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 68968 cccggaagagcttgttccg 68950
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 63633 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 63674
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 11726 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 11667
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 11666 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 11607
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 11606 gggagacatgtgggagggagccgacgaggtg 11576
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 22480 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 22421
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 22420 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 22361
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 22360 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 22318
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 12116 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 12057
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 12056 cccggaagagcttgttccg 12038
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 6721 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 6762
>gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017101, whole
genome shotgun sequence
Length = 12787
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Plus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 1521 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 1580
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 1581 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 1640
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 1641 gggagacatgtgggagggagccgacgaggtg 1671
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 1131 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 1190
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 1191 cccggaagagcttgttccg 1209
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 6526 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 6485
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1587
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 364 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 305
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 304 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 245
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 244 gggagacatgtgggagggagccgacgaggtg 214
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 754 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 695
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 694 cccggaagagcttgttccg 676
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 68638 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 68579
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 68578 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 68519
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 68518 gggagacatgtgggagggagccgacgaggtg 68488
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 79392 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 79333
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 79332 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 79273
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 79272 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 79230
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 69028 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 68969
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 68968 cccggaagagcttgttccg 68950
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 63633 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 63674
Score = 44.1 bits (22), Expect = 0.27
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1678 gaggaggaggaggacgccgagg 1699
||||||||||||||||||||||
Sbjct: 2685526 gaggaggaggaggacgccgagg 2685505
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 307514 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 307455
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 307454 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 307395
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 307394 gggagacatgtgggagggagccgacgaggtg 307364
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 318450 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 318391
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 318390 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 318331
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 318330 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 318288
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 307904 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 307845
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 307844 cccggaagagcttgttccg 307826
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 302509 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 302550
Score = 44.1 bits (22), Expect = 0.27
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1678 gaggaggaggaggacgccgagg 1699
||||||||||||||||||||||
Sbjct: 2803009 gaggaggaggaggacgccgagg 2802988
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 307514 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 307455
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 307454 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 307395
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 307394 gggagacatgtgggagggagccgacgaggtg 307364
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 318450 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 318391
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 318390 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 318331
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 318330 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 318288
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 307904 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 307845
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 307844 cccggaagagcttgttccg 307826
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 302509 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 302550
Score = 44.1 bits (22), Expect = 0.27
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1678 gaggaggaggaggacgccgagg 1699
||||||||||||||||||||||
Sbjct: 2803009 gaggaggaggaggacgccgagg 2802988
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 5e-009
Identities = 122/151 (80%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| |||||||||||||| |||||| ||| || |||| |||||| |
Sbjct: 302212 ggtcgtgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtgggga 302153
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| || || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 302152 cggagccgaggtggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 302093
Query: 1536 aggagacgtgcgggtgggagccgatgaggtg 1566
|||||| || ||| ||||||||| ||||||
Sbjct: 302092 gggagacatgtgggagggagccgacgaggtg 302062
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 312966 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 312907
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 312906 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 312847
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 312846 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 312804
Score = 61.9 bits (31), Expect = 1e-006
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagct 1082
|||||||||| ||||| | ||||||||| |||||||| | |||| |||| || | ||||
Sbjct: 302602 tcgggaagtaatcctctaggttgaaccctcccaggagcgaggcgttggtgtcgatgagct 302543
Query: 1083 cccggaacagcttgttccg 1101
||||||| |||||||||||
Sbjct: 302542 cccggaagagcttgttccg 302524
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 297207 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 297248
Score = 44.1 bits (22), Expect = 0.27
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1678 gaggaggaggaggacgccgagg 1699
||||||||||||||||||||||
Sbjct: 2918000 gaggaggaggaggacgccgagg 2917979
>gb|AQ573853.1|AQ573853 nbxb0085A03r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0085A03r, DNA sequence
Length = 700
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 216 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 259
>gb|AQ691042.1|AQ691042 nbxb0086M20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0086M20r, DNA sequence
Length = 772
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 216 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 259
>gb|AQ795917.1|AQ795917 nbxb0058F03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0058F03f, DNA sequence
Length = 684
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 226 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 269
>gb|CB637562.1|CB637562 OSJNEa04G21.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa04G21 5', mRNA sequence
Length = 589
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 212 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 169
>dbj|AK060739.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C11, full
insert sequence
Length = 1603
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 75 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 32
>dbj|AK066010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043F18, full
insert sequence
Length = 1779
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 230 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 187
>gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091D07,
complete sequence
Length = 144652
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 124599 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 124642
>ref|NT_107125.1| Oryza sativa (japonica cultivar-group)
Length = 510809
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 490756 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 490799
>gb|AACV01023023.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023023, whole
genome shotgun sequence
Length = 44241
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 38504 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 38461
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 4373570 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 4373613
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 12228614 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 12228657
Score = 46.1 bits (23), Expect = 0.068
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1675 ggcgaggaggaggaggacgccga 1697
|||||||||||||||||||||||
Sbjct: 4163406 ggcgaggaggaggaggacgccga 4163428
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 15380969 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 15381012
Score = 46.1 bits (23), Expect = 0.068
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1675 ggcgaggaggaggaggacgccga 1697
|||||||||||||||||||||||
Sbjct: 4064616 ggcgaggaggaggaggacgccga 4064638
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 63.9 bits (32), Expect = 3e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1537 ggagacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 15463906 ggagacgtgagggagggcgccgatgaggtggaggtgcccgatga 15463949
Score = 46.1 bits (23), Expect = 0.068
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1675 ggcgaggaggaggaggacgccga 1697
|||||||||||||||||||||||
Sbjct: 4073310 ggcgaggaggaggaggacgccga 4073332
>gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017103, whole
genome shotgun sequence
Length = 15027
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 9006 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 8947
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 8946 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 8887
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 8886 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 8844
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1575
Score = 61.9 bits (31), Expect = 1e-006
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1416 ggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtgggca 1475
||||||| |||||||| ||||||||||| || |||||| ||| || || | |||||| |
Sbjct: 349 ggtcgtgggtgcggaggacggcctcggctgcgcgcggcgaggagacgaccagggtgggga 290
Query: 1476 cggcgccgacctgcaccagcatcagcccgttgtggccgtacttggcgtggaggtcgcgga 1535
||| ||||| | || ||||| || |||| | |||| | |||||| |||||| ||||
Sbjct: 289 cggagccgaggcggacgagcatgaggccgtcgcggccatgtttggcggcgaggtctcgga 230
Query: 1536 aggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||| |||| ||| |||||||||||| | |||||||||
Sbjct: 229 gggagacgtacgggagggggccgatgaggtgcatgtgcccgat 187
>gb|CB640129.1|CB640129 OSJNEa13G03.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa13G03 5', mRNA sequence
Length = 393
Score = 60.0 bits (30), Expect = 5e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 1539 agacgtgcgggtgggagccgatgaggtggaggtgcccgatga 1580
||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 180 agacgtgagggagggcgccgatgaggtggaggtgcccgatga 139
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 165433
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 135455 gcgccagtacgcgccgtagggcgcgaaggccacgt 135421
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 2201562 gcgccagtacgcgccgtagggcgcgaaggccacgt 2201596
>gb|AACV01025036.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025036, whole
genome shotgun sequence
Length = 29860
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 5790 gcgccagtacgcgccgtagggcgcgaaggccacgt 5824
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 1019741 gcgccagtacgcgccgtagggcgcgaaggccacgt 1019775
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 16542846 gcgccagtacgcgccgtagggcgcgaaggccacgt 16542880
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 19891805 gcgccagtacgcgccgtagggcgcgaaggccacgt 19891839
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgt 1355
|||||||||| ||||||| ||||||||||||||||
Sbjct: 19818019 gcgccagtacgcgccgtagggcgcgaaggccacgt 19818053
>gb|CB656256.1|CB656256 OSJNEc10G09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10G09 5', mRNA sequence
Length = 741
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 468 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 427
>dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014E16, full
insert sequence
Length = 1395
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 488 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 447
>dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P19, full
insert sequence
Length = 2151
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 488 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 447
>ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2151
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 488 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 447
>ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1395
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtg 1566
||||||||||| ||||||||| |||| |||||||| ||||||
Sbjct: 488 gaggtcgcggagggagacgtgagggttggagccgacgaggtg 447
>gb|CZ553013.1|CZ553013 M0006767 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0006767, DNA sequence
Length = 595
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 312 ggatggcgaggaagaggaggacgccgagg 340
>gb|CB666352.1|CB666352 OSJNEd13D14.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13D14 5', mRNA sequence
Length = 857
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 305 ggatggcgaggaagaggaggacgccgagg 333
>dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D04, full
insert sequence
Length = 1216
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 319 ggatggcgaggaagaggaggacgccgagg 347
>gb|AACV01010184.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010184, whole
genome shotgun sequence
Length = 29701
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 320 ggatggcgaggaagaggaggacgccgagg 292
>ref|XM_473307.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 867
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 291 ggatggcgaggaagaggaggacgccgagg 319
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 459603 ggatggcgaggaagaggaggacgccgagg 459631
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 4515835 ggatggcgaggaagaggaggacgccgagg 4515863
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 23659934 ggatggcgaggaagaggaggacgccgagg 23659962
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
complete sequence
Length = 113677
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 100180 ggatggcgaggaagaggaggacgccgagg 100152
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1671 ggatggcgaggaggaggaggacgccgagg 1699
|||||||||||| ||||||||||||||||
Sbjct: 26683015 ggatggcgaggaagaggaggacgccgagg 26683043
>gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0036N08f, DNA sequence
Length = 754
Score = 48.1 bits (24), Expect = 0.017
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 490 cgggtccctggcgagcgcccacgcgttgacga 521
|||||||||| ||| |||||||||||||||||
Sbjct: 645 cgggtccctgccgatcgcccacgcgttgacga 676
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0416G11
Length = 138858
Score = 48.1 bits (24), Expect = 0.017
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 490 cgggtccctggcgagcgcccacgcgttgacga 521
|||||||||| ||| |||||||||||||||||
Sbjct: 2190 cgggtccctgccgatcgcccacgcgttgacga 2221
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111C09
Length = 156393
Score = 48.1 bits (24), Expect = 0.017
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 490 cgggtccctggcgagcgcccacgcgttgacga 521
|||||||||| ||| |||||||||||||||||
Sbjct: 121802 cgggtccctgccgatcgcccacgcgttgacga 121833
>gb|AACV01000500.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000500, whole
genome shotgun sequence
Length = 4389
Score = 48.1 bits (24), Expect = 0.017
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgtc 1356
|||||||||||||||||| |||||||| || |||||
Sbjct: 913 gcgccagtactcgccgtagggcgcgaacgcgacgtc 878
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,771,233
Number of Sequences: 438736
Number of extensions: 3771233
Number of successful extensions: 51813
Number of sequences better than 0.5: 128
Number of HSP's better than 0.5 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47038
Number of HSP's gapped (non-prelim): 4771
length of query: 1851
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1829
effective length of database: 2,790,767,724
effective search space: 5104314167196
effective search space used: 5104314167196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)