BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060522.1| Oryza sativa (japonica cultivar-group) cDNA... 365 2e-098
gb|AACV01008784.1| Oryza sativa (japonica cultivar-group) c... 143 2e-031
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CA998829.1|CA998829 S345M_G02 Rice cold stress germinati... 117 9e-024
gb|CA998828.1|CA998828 S345M_G01 Rice cold stress germinati... 111 6e-022
gb|AU225857.1|AU225857 AU225857 Oryza sativa Koshihikari pi... 60 2e-006
gb|AACV01010311.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 42 0.45
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 42 0.45
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
>dbj|AK060522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E03, full
insert sequence
Length = 1793
Score = 365 bits (184), Expect = 2e-098
Identities = 286/320 (89%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 1099 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 1158
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 1159 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 1218
Query: 121 gagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggtacaatg 180
|||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1219 gagcggcatttataatcgcatcaactgctagtgaagaggaaatgcttcgctggtacaatg 1278
Query: 181 aacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaaggagtgctga 240
||||||| ||||||| ||||||||||| || |||||||||| ||||||||||||||||
Sbjct: 1279 aacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaaggagtgctga 1338
Query: 241 ctcgcatatacaccccaatgacaattgttcagagtctgcgcgaatccggtgtcttcactt 300
|||||||||||||||||||| |||||||||| |||| || || || |||||||||||||
Sbjct: 1339 ctcgcatatacaccccaatggcaattgttcaaggtctacgtgagtctggtgtcttcactt 1398
Query: 301 ccgccattgcagctggccaa 320
| |||||||||||| ||||
Sbjct: 1399 cttccattgcagctgcccaa 1418
Score = 46.1 bits (23), Expect = 0.029
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 1569 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 1615
>gb|AACV01008784.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008784, whole
genome shotgun sequence
Length = 47465
Score = 143 bits (72), Expect = 2e-031
Identities = 111/124 (89%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 41275 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 41216
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 41215 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 41156
Query: 121 gagc 124
||||
Sbjct: 41155 gagc 41152
Score = 121 bits (61), Expect = 6e-025
Identities = 82/89 (92%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
|||||||||||||||| ||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 38379 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 38320
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 38319 gagtgctgactcgcatatacaccccaatg 38291
Score = 77.8 bits (39), Expect = 8e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 129 tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
|||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 39160 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 39114
Score = 46.1 bits (23), Expect = 0.029
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
|||||||||| |||| || || || |||||||||||||| |||||||||||| ||||
Sbjct: 38194 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 38136
Score = 46.1 bits (23), Expect = 0.029
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 37985 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 37939
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
genomic scaffold, whole genome shotgun sequence
Length = 1402826
Score = 143 bits (72), Expect = 2e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 915097 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 915156
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 915157 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 915216
Query: 121 gagc 124
||||
Sbjct: 915217 gagc 915220
Score = 121 bits (61), Expect = 6e-025
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
|||||||||||||||| ||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 917993 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 918052
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 918053 gagtgctgactcgcatatacaccccaatg 918081
Score = 77.8 bits (39), Expect = 8e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 129 tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
|||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 917212 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 917258
Score = 46.1 bits (23), Expect = 0.029
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 918387 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 918433
Score = 46.1 bits (23), Expect = 0.029
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
|||||||||| |||| || || || |||||||||||||| |||||||||||| ||||
Sbjct: 918178 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 918236
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 143 bits (72), Expect = 2e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 5218996 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 5219055
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 5219056 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 5219115
Query: 121 gagc 124
||||
Sbjct: 5219116 gagc 5219119
Score = 121 bits (61), Expect = 6e-025
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
|||||||||||||||| ||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 5221892 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 5221951
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 5221952 gagtgctgactcgcatatacaccccaatg 5221980
Score = 77.8 bits (39), Expect = 8e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 129 tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
|||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 5221111 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 5221157
Score = 46.1 bits (23), Expect = 0.029
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 5222286 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 5222332
Score = 46.1 bits (23), Expect = 0.029
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
|||||||||| |||| || || || |||||||||||||| |||||||||||| ||||
Sbjct: 5222077 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 5222135
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 25441719 aagaaaaggaagaaaagaaag 25441699
>gb|CA998829.1|CA998829 S345M_G02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 499
Score = 117 bits (59), Expect = 9e-024
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 214 taaagcttctgaggaaaggagtgctgactcgcatatacaccccaatgacaattgttcaga 273
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8 taaagcttctcaggaaaggagtgctgactcgcatatacaccccaatggcaattgttcaag 67
Query: 274 gtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
|||| || || || |||||||||||||| ||||||||||| ||||
Sbjct: 68 gtctacgtgagtctggtgtcttcacttctttcattgcagctgcccaa 114
Score = 46.1 bits (23), Expect = 0.029
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 265 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 311
>gb|CA998828.1|CA998828 S345M_G01 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 394
Score = 111 bits (56), Expect = 6e-022
Identities = 96/108 (88%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 214 taaagcttctgaggaaaggagtgctgactcgcatatacaccccaatgacaattgttcaga 273
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 8 taaagcttctcaggaaaggagtgctgactcgcatatacaccccaatggcaattgttcaaa 67
Query: 274 gtctgcgcga-atccggtgtcttcacttccgccattgcagctggccaa 320
|||| || || || |||||||||||||| ||||||||||| ||||
Sbjct: 68 gtctacgtgaggtctggtgtcttcacttctttcattgcagctgcccaa 115
Score = 42.1 bits (21), Expect = 0.45
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 477 aatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
|||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 272 aatgtatctgctgttccacctttgtcaccacctagtttgga 312
>gb|AU225857.1|AU225857 AU225857 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0889, mRNA sequence
Length = 490
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 69 tgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacagagcagct 128
|||||||| ||||| |||||||| ||| ||||||| || || || ||||||||| ||
Sbjct: 16 tgcaagcccacaaaggaagatgtgaagcgatgttttatcttggaatttgacagattggcc 75
Query: 129 tttataattgcatcaactgcta 150
||||||||||||||||| ||||
Sbjct: 76 tttataattgcatcaacagcta 97
>gb|AACV01010311.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010311, whole
genome shotgun sequence
Length = 74610
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 2995 aagaaaaggaagaaaagaaag 3015
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 2257048 aagaaaaggaagaaaagaaag 2257028
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 6297620 aagaaaaggaagaaaagaaag 6297600
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
complete sequence
Length = 175163
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 129072 aagaaaaggaagaaaagaaag 129052
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 28480397 aagaaaaggaagaaaagaaag 28480377
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,514,789
Number of Sequences: 438736
Number of extensions: 1514789
Number of successful extensions: 15132
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14991
Number of HSP's gapped (non-prelim): 140
length of query: 788
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 767
effective length of database: 2,791,206,460
effective search space: 2140855354820
effective search space used: 2140855354820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)