BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Oryza_nucl_with_EST.fasta 
           438,736 sequences; 2,800,419,916 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AK060522.1|  Oryza sativa (japonica cultivar-group) cDNA...   365   2e-098
gb|AACV01008784.1|  Oryza sativa (japonica cultivar-group) c...   143   2e-031
gb|CH401185.1|  Oryza sativa (japonica cultivar-group) chrom...   143   2e-031
gb|CM000141.1|  Oryza sativa (japonica cultivar-group) chrom...   143   2e-031
gb|CA998829.1|CA998829  S345M_G02 Rice cold stress germinati...   117   9e-024
gb|CA998828.1|CA998828  S345M_G01 Rice cold stress germinati...   111   6e-022
gb|AU225857.1|AU225857  AU225857 Oryza sativa Koshihikari pi...    60   2e-006
gb|AACV01010311.1|  Oryza sativa (japonica cultivar-group) c...    42   0.45 
ref|NT_079865.2|  Oryza sativa (japonica cultivar-group)           42   0.45 
gb|CH401190.1|  Oryza sativa (japonica cultivar-group) chrom...    42   0.45 
emb|AL662954.2|OSJN00155  Oryza sativa genomic DNA, chromoso...    42   0.45 
dbj|AP008210.1|  Oryza sativa (japonica cultivar-group) geno...    42   0.45 
>dbj|AK060522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E03, full
            insert sequence
          Length = 1793

 Score =  365 bits (184), Expect = 2e-098
 Identities = 286/320 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
            ||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 1099 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 1158

                                                                        
Query: 61   gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
            ||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 1159 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 1218

                                                                        
Query: 121  gagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggtacaatg 180
            |||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1219 gagcggcatttataatcgcatcaactgctagtgaagaggaaatgcttcgctggtacaatg 1278

                                                                        
Query: 181  aacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaaggagtgctga 240
            ||||||| |||||||  ||||||||||| ||  |||||||||| ||||||||||||||||
Sbjct: 1279 aacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaaggagtgctga 1338

                                                                        
Query: 241  ctcgcatatacaccccaatgacaattgttcagagtctgcgcgaatccggtgtcttcactt 300
            |||||||||||||||||||| ||||||||||  |||| || || || |||||||||||||
Sbjct: 1339 ctcgcatatacaccccaatggcaattgttcaaggtctacgtgagtctggtgtcttcactt 1398

                                
Query: 301  ccgccattgcagctggccaa 320
            |  |||||||||||| ||||
Sbjct: 1399 cttccattgcagctgcccaa 1418

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 471  gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
            |||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 1569 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 1615
>gb|AACV01008784.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008784, whole
             genome shotgun sequence
          Length = 47465

 Score =  143 bits (72), Expect = 2e-031
 Identities = 111/124 (89%)
 Strand = Plus / Minus

                                                                         
Query: 1     aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
             ||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 41275 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 41216

                                                                         
Query: 61    gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
             ||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 41215 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 41156

                 
Query: 121   gagc 124
             ||||
Sbjct: 41155 gagc 41152

 Score =  121 bits (61), Expect = 6e-025
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                         
Query: 172   ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
             |||||||||||||||| |||||||  ||||||||||| ||  |||||||||| |||||||
Sbjct: 38379 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 38320

                                          
Query: 232   gagtgctgactcgcatatacaccccaatg 260
             |||||||||||||||||||||||||||||
Sbjct: 38319 gagtgctgactcgcatatacaccccaatg 38291

 Score = 77.8 bits (39), Expect = 8e-012
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                            
Query: 129   tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
             |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 39160 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 39114

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 262   caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
             ||||||||||  |||| || || || ||||||||||||||  |||||||||||| ||||
Sbjct: 38194 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 38136

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 471   gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
             |||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 37985 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 37939
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
              genomic scaffold, whole genome shotgun sequence
          Length = 1402826

 Score =  143 bits (72), Expect = 2e-031
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                          
Query: 1      aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
              ||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 915097 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 915156

                                                                          
Query: 61     gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
              ||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 915157 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 915216

                  
Query: 121    gagc 124
              ||||
Sbjct: 915217 gagc 915220

 Score =  121 bits (61), Expect = 6e-025
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                          
Query: 172    ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
              |||||||||||||||| |||||||  ||||||||||| ||  |||||||||| |||||||
Sbjct: 917993 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 918052

                                           
Query: 232    gagtgctgactcgcatatacaccccaatg 260
              |||||||||||||||||||||||||||||
Sbjct: 918053 gagtgctgactcgcatatacaccccaatg 918081

 Score = 77.8 bits (39), Expect = 8e-012
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                             
Query: 129    tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
              |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 917212 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 917258

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 471    gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
              |||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 918387 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 918433

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 262    caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
              ||||||||||  |||| || || || ||||||||||||||  |||||||||||| ||||
Sbjct: 918178 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 918236
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
               sequence
          Length = 32311234

 Score =  143 bits (72), Expect = 2e-031
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
               ||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 5218996 aggctgctgttttgcactatacatacacaaaattttcagacttaacatctagacgtgatc 5219055

                                                                           
Query: 61      gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
               ||||||||||||| || |||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 5219056 gctgtggatgcaaacccacaaaagacgatgtgaaaagatgcttcatgttggattttgaca 5219115

                   
Query: 121     gagc 124
               ||||
Sbjct: 5219116 gagc 5219119

 Score =  121 bits (61), Expect = 6e-025
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                           
Query: 172     ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
               |||||||||||||||| |||||||  ||||||||||| ||  |||||||||| |||||||
Sbjct: 5221892 ggtacaatgaacgagttgtgtggaatgataagcagctcaatctaaagcttctcaggaaag 5221951

                                            
Query: 232     gagtgctgactcgcatatacaccccaatg 260
               |||||||||||||||||||||||||||||
Sbjct: 5221952 gagtgctgactcgcatatacaccccaatg 5221980

 Score = 77.8 bits (39), Expect = 8e-012
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                              
Query: 129     tttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
               |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 5221111 tttataatcgcatcaactgctagtgaagaggaaatgcttcgctggta 5221157

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 471     gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
               |||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 5222286 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 5222332

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 262     caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
               ||||||||||  |||| || || || ||||||||||||||  |||||||||||| ||||
Sbjct: 5222077 caattgttcaaggtctacgtgagtctggtgtcttcacttcttccattgcagctgcccaa 5222135

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 593      aagaaaaggaagaaaagaaag 613
                |||||||||||||||||||||
Sbjct: 25441719 aagaaaaggaagaaaagaaag 25441699
>gb|CA998829.1|CA998829 S345M_G02 Rice cold stress germination cDNA library Oryza sativa
           (japonica cultivar-group) cDNA 5', mRNA sequence
          Length = 499

 Score =  117 bits (59), Expect = 9e-024
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                       
Query: 214 taaagcttctgaggaaaggagtgctgactcgcatatacaccccaatgacaattgttcaga 273
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  
Sbjct: 8   taaagcttctcaggaaaggagtgctgactcgcatatacaccccaatggcaattgttcaag 67

                                                          
Query: 274 gtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaa 320
           |||| || || || ||||||||||||||   ||||||||||| ||||
Sbjct: 68  gtctacgtgagtctggtgtcttcacttctttcattgcagctgcccaa 114

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 471 gatactaatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
           |||| ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 265 gatagtaatgtatctgctgttccacctttgtcaccacctagtttgga 311
>gb|CA998828.1|CA998828 S345M_G01 Rice cold stress germination cDNA library Oryza sativa
           (japonica cultivar-group) cDNA 5', mRNA sequence
          Length = 394

 Score =  111 bits (56), Expect = 6e-022
 Identities = 96/108 (88%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 214 taaagcttctgaggaaaggagtgctgactcgcatatacaccccaatgacaattgttcaga 273
           |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 8   taaagcttctcaggaaaggagtgctgactcgcatatacaccccaatggcaattgttcaaa 67

                                                           
Query: 274 gtctgcgcga-atccggtgtcttcacttccgccattgcagctggccaa 320
           |||| || ||  || ||||||||||||||   ||||||||||| ||||
Sbjct: 68  gtctacgtgaggtctggtgtcttcacttctttcattgcagctgcccaa 115

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 477 aatgtaactgctgttccaccgttgtcgccgcccagtttgga 517
           |||||| ||||||||||||| ||||| || || ||||||||
Sbjct: 272 aatgtatctgctgttccacctttgtcaccacctagtttgga 312
>gb|AU225857.1|AU225857 AU225857 Oryza sativa Koshihikari pistil Oryza sativa (japonica
           cultivar-group) cDNA clone KP3-0889, mRNA sequence
          Length = 490

 Score = 60.0 bits (30), Expect = 2e-006
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                       
Query: 69  tgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacagagcagct 128
           |||||||| ||||| |||||||| ||| ||||||| || || || |||||||||   || 
Sbjct: 16  tgcaagcccacaaaggaagatgtgaagcgatgttttatcttggaatttgacagattggcc 75

                                 
Query: 129 tttataattgcatcaactgcta 150
           ||||||||||||||||| ||||
Sbjct: 76  tttataattgcatcaacagcta 97
>gb|AACV01010311.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010311, whole
            genome shotgun sequence
          Length = 74610

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 593  aagaaaaggaagaaaagaaag 613
            |||||||||||||||||||||
Sbjct: 2995 aagaaaaggaagaaaagaaag 3015
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
          Length = 3674553

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 593     aagaaaaggaagaaaagaaag 613
               |||||||||||||||||||||
Sbjct: 2257048 aagaaaaggaagaaaagaaag 2257028
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
               scaffold, whole genome shotgun sequence
          Length = 13167135

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 593     aagaaaaggaagaaaagaaag 613
               |||||||||||||||||||||
Sbjct: 6297620 aagaaaaggaagaaaagaaag 6297600
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
              complete sequence
          Length = 175163

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 593    aagaaaaggaagaaaagaaag 613
              |||||||||||||||||||||
Sbjct: 129072 aagaaaaggaagaaaagaaag 129052
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 593      aagaaaaggaagaaaagaaag 613
                |||||||||||||||||||||
Sbjct: 28480397 aagaaaaggaagaaaagaaag 28480377
  Database: Oryza_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:41 PM
  Number of letters in database: 2,800,419,916
  Number of sequences in database:  438,736
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,514,789
Number of Sequences: 438736
Number of extensions: 1514789
Number of successful extensions: 15132
Number of sequences better than  0.5: 12
Number of HSP's better than  0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14991
Number of HSP's gapped (non-prelim): 140
length of query: 788
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 767
effective length of database: 2,791,206,460
effective search space: 2140855354820
effective search space used: 2140855354820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)