BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB667222.1|CB667222 OSJNEd14H08.r OSJNEd Oryza sativa (j... 371 e-100
dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 371 e-100
gb|CB666200.1|CB666200 OSJNEd13A02.f OSJNEd Oryza sativa (j... 276 2e-071
dbj|AP004041.2| Oryza sativa (japonica cultivar-group) geno... 222 3e-055
gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) c... 222 3e-055
dbj|BA000044.2| Oryza sativa (japonica cultivar-group) geno... 222 3e-055
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 222 3e-055
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 222 3e-055
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 222 3e-055
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 222 3e-055
gb|AY360393.2| Oryza sativa (japonica cultivar-group) chrom... 222 3e-055
gb|CF309892.1|CF309892 ABF--04-E11.b1 ABF3-overexpressing t... 186 2e-044
gb|CF326019.1|CF326019 JMT1--04-O03.g1 AtJMT-overexpressing... 180 1e-042
gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (j... 172 2e-040
gb|AQ857674.1|AQ857674 nbeb0011A07f CUGI Rice BAC Library (... 98 1e-017
gb|CB639268.1|CB639268 OSJNEa08O20.r OSJNEa Oryza sativa (j... 74 2e-010
gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germinati... 46 0.037
gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germinati... 46 0.037
gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (j... 46 0.037
dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.037
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 46 0.037
dbj|AP003568.3| Oryza sativa (japonica cultivar-group) geno... 46 0.037
gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.037
>gb|CB667222.1|CB667222 OSJNEd14H08.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14H08 3', mRNA sequence
Length = 866
Score = 371 bits (187), Expect = e-100
Identities = 391/459 (85%)
Strand = Plus / Minus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||||||||| |||||||| || || |||||||||| || | ||| ||| |||| |
Sbjct: 828 gatgaagaatgttcatccacttattgtatttcatttagagtgaagaatgctgaggctgta 769
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
||||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 768 cctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgttttg 709
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||||
Sbjct: 708 tacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggct 649
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||
Sbjct: 648 ctaaggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggt 589
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| ||||||| || ||||||||||||||| | |||||||||||||| || || || |||
Sbjct: 588 gaaagtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctc 529
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaa 593
|||||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| ||
Sbjct: 528 aaaggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacag 469
Query: 594 gatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaat 653
||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||
Sbjct: 468 gatgtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataac 409
Query: 654 ctaaagtcagctctacggcaatttggtatattgaaagac 692
|| ||||||||||||| |||||||||||| ||||||||
Sbjct: 408 cttaagtcagctctacaacaatttggtatactgaaagac 370
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
insert sequence
Length = 3858
Score = 371 bits (187), Expect = e-100
Identities = 391/459 (85%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||||||||| |||||||| || || |||||||||| || | ||| ||| |||| |
Sbjct: 2929 gatgaagaatgttcatccacttattgtatttcatttagagtgaagaatgctgaggctgta 2988
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
||||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 2989 cctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgttttg 3048
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||||
Sbjct: 3049 tacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggct 3108
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||
Sbjct: 3109 ctaaggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggt 3168
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| ||||||| || ||||||||||||||| | |||||||||||||| || || || |||
Sbjct: 3169 gaaagtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctc 3228
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaa 593
|||||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| ||
Sbjct: 3229 aaaggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacag 3288
Query: 594 gatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaat 653
||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||
Sbjct: 3289 gatgtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataac 3348
Query: 654 ctaaagtcagctctacggcaatttggtatattgaaagac 692
|| ||||||||||||| |||||||||||| ||||||||
Sbjct: 3349 cttaagtcagctctacaacaatttggtatactgaaagac 3387
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 2699 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 2758
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 2759 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 2818
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 2819 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 2878
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 2879 tttgttgggcagc 2891
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3201
Score = 371 bits (187), Expect = e-100
Identities = 391/459 (85%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||||||||| |||||||| || || |||||||||| || | ||| ||| |||| |
Sbjct: 2734 gatgaagaatgttcatccacttattgtatttcatttagagtgaagaatgctgaggctgta 2793
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
||||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 2794 cctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgttttg 2853
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||||
Sbjct: 2854 tacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggct 2913
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||
Sbjct: 2914 ctaaggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggt 2973
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| ||||||| || ||||||||||||||| | |||||||||||||| || || || |||
Sbjct: 2974 gaaagtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctc 3033
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaa 593
|||||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| ||
Sbjct: 3034 aaaggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacag 3093
Query: 594 gatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaat 653
||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||
Sbjct: 3094 gatgtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataac 3153
Query: 654 ctaaagtcagctctacggcaatttggtatattgaaagac 692
|| ||||||||||||| |||||||||||| ||||||||
Sbjct: 3154 cttaagtcagctctacaacaatttggtatactgaaagac 3192
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 2504 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 2563
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 2564 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 2623
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 2624 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 2683
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 2684 tttgttgggcagc 2696
>gb|CB666200.1|CB666200 OSJNEd13A02.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13A02 5', mRNA sequence
Length = 741
Score = 276 bits (139), Expect = 2e-071
Identities = 301/355 (84%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||||||||| |||||||| || || |||||||||| || | ||| ||| |||| |
Sbjct: 385 gatgaagaatgttcatccacttattgtatttcatttagagtgaagaatgctgaggctgta 444
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
||||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 445 cctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgttttg 504
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||||
Sbjct: 505 tacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggct 564
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||
Sbjct: 565 ctaaggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggt 624
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| ||||||| || ||||||||||||||| | |||||||||||||| || || || |||
Sbjct: 625 gaaagtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctc 684
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcat 588
|||||||| || ||| ||| ||| |||||||| |||||| |||||| |||||||
Sbjct: 685 aaaggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcat 739
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 155 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 214
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 215 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 274
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 275 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 334
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 335 tttgttgggcagc 347
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1115_A07
Length = 165126
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 17707 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 17766
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 17767 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 17826
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 17827 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 17886
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 17887 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 17946
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 17947 aagtcagctctacaacaatttggtatactgaaagac 17982
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 16050 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 16109
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 16110 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 16169
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 16170 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 16229
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 16230 tttgttgggcagc 16242
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 16439 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 16498
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 16499 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 16558
Query: 413 tttaaggt 420
| ||||||
Sbjct: 16559 tctaaggt 16566
>gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017983, whole
genome shotgun sequence
Length = 17582
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 8204 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 8263
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 8264 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 8323
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 8324 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 8383
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 8384 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 8443
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 8444 aagtcagctctacaacaatttggtatactgaaagac 8479
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 6547 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 6606
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 6607 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 6666
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 6667 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 6726
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 6727 tttgttgggcagc 6739
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 6936 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 6995
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 6996 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 7055
Query: 413 tttaaggt 420
| ||||||
Sbjct: 7056 tctaaggt 7063
>dbj|BA000044.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
centromeric region
Length = 1992366
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 465173 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 465232
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 465233 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 465292
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 465293 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 465352
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 465353 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 465412
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 465413 aagtcagctctacaacaatttggtatactgaaagac 465448
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 463516 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 463575
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 463576 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 463635
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 463636 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 463695
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 463696 tttgttgggcagc 463708
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 463905 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 463964
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 463965 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 464024
Query: 413 tttaaggt 420
| ||||||
Sbjct: 464025 tctaaggt 464032
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 12173994 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 12174053
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 12174054 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 12174113
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 12174114 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 12174173
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 12174174 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 12174233
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 12174234 aagtcagctctacaacaatttggtatactgaaagac 12174269
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 12172337 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 12172396
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 12172397 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 12172456
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 12172457 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 12172516
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 12172517 tttgttgggcagc 12172529
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 12172726 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 12172785
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 12172786 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 12172845
Query: 413 tttaaggt 420
| ||||||
Sbjct: 12172846 tctaaggt 12172853
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 4164323 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 4164382
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 4164383 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 4164442
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 4164443 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 4164502
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 4164503 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 4164562
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 4164563 aagtcagctctacaacaatttggtatactgaaagac 4164598
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 4162666 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 4162725
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 4162726 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 4162785
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 4162786 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 4162845
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 4162846 tttgttgggcagc 4162858
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 4163055 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 4163114
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 4163115 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 4163174
Query: 413 tttaaggt 420
| ||||||
Sbjct: 4163175 tctaaggt 4163182
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 11766329 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 11766388
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 11766389 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 11766448
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 11766449 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 11766508
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 11766509 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 11766568
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 11766569 aagtcagctctacaacaatttggtatactgaaagac 11766604
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 11764672 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 11764731
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 11764732 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 11764791
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 11764792 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 11764851
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 11764852 tttgttgggcagc 11764864
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 11765061 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 11765120
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 11765121 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 11765180
Query: 413 tttaaggt 420
| ||||||
Sbjct: 11765181 tctaaggt 11765188
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 12413678 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 12413737
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 12413738 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 12413797
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 12413798 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 12413857
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 12413858 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 12413917
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 12413918 aagtcagctctacaacaatttggtatactgaaagac 12413953
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 12412021 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 12412080
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 12412081 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 12412140
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 12412141 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 12412200
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 12412201 tttgttgggcagc 12412213
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 12412410 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 12412469
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 12412470 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 12412529
Query: 413 tttaaggt 420
| ||||||
Sbjct: 12412530 tctaaggt 12412537
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 222 bits (112), Expect = 3e-055
Identities = 235/276 (85%)
Strand = Plus / Plus
Query: 417 aggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgag 476
||||| |||||||| |||||||||||||||||||||| || || ||| |||| |||||
Sbjct: 82993 aggtacttgtatataagatggggggtagagctgtcaaatatgacagtggttgttggtgaa 83052
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaa 536
||||||| || ||||||||||||||| | |||||||||||||| || || || ||||||
Sbjct: 83053 agtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaa 83112
Query: 537 ggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagat 596
||||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || |||
Sbjct: 83113 ggctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggat 83172
Query: 597 gttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatcta 656
|| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 83173 gtcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctt 83232
Query: 657 aagtcagctctacggcaatttggtatattgaaagac 692
||||||||||||| |||||||||||| ||||||||
Sbjct: 83233 aagtcagctctacaacaatttggtatactgaaagac 83268
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 81336 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 81395
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 81396 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 81455
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 81456 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 81515
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 81516 tttgttgggcagc 81528
Score = 143 bits (72), Expect = 2e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 293 acctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgtttt 352
|||||||||||| ||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 81725 acctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgtttt 81784
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||| ||||||||||||||||||||||| ||||||||||| || || || || |||||
Sbjct: 81785 gtacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggc 81844
Query: 413 tttaaggt 420
| ||||||
Sbjct: 81845 tctaaggt 81852
>gb|CF309892.1|CF309892 ABF--04-E11.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--04-E11, mRNA sequence
Length = 472
Score = 186 bits (94), Expect = 2e-044
Identities = 166/193 (86%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 35 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 94
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 95 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 154
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 155 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 214
Query: 181 ttcgttgggcagc 193
|| ||||||||||
Sbjct: 215 tttgttgggcagc 227
Score = 174 bits (88), Expect = 6e-041
Identities = 178/208 (85%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||||||||| |||||||| || || |||||||||| || | ||| ||| |||| |
Sbjct: 265 gatgaagaatgttcatccacttattgtatttcatttagagtgaagaatgctgaggctgta 324
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
||||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 325 cctcctgtgaaagagcttaggaagacaatgagaattcaagcactgcgctgtcatgttttg 384
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||||
Sbjct: 385 tacagtcatgatggtagcaagttgaatgttattcctgttttagcatcacgatcgcaggct 444
Query: 414 ttaaggtatttgtatatccgatgggggg 441
||||||| |||||||| |||||||||
Sbjct: 445 ctaaggtacttgtatataagatgggggg 472
>gb|CF326019.1|CF326019 JMT1--04-O03.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-O03, mRNA sequence
Length = 599
Score = 180 bits (91), Expect = 1e-042
Identities = 184/215 (85%)
Strand = Plus / Minus
Query: 478 gtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaag 537
||||||| || ||||||||||||||| | |||||||||||||| || || || |||||||
Sbjct: 589 gtggtgatactgattatgaaggactattaggaggcgtgcacaagaccattattctcaaag 530
Query: 538 gctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatg 597
|||| || ||| ||| ||| |||||||| |||||| |||||| ||||||| || ||||
Sbjct: 529 gctcatttaatgctgttcctaaccaagtccatgctgccagaagttattcattacaggatg 470
Query: 598 ttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaa 657
| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| || || |
Sbjct: 469 tcatatcctttgacaaaccaggaattacttcaatcgagggatatggtccagataacctta 410
Query: 658 agtcagctctacggcaatttggtatattgaaagac 692
|||||||||||| |||||||||||| ||||||||
Sbjct: 409 agtcagctctacaacaatttggtatactgaaagac 375
>gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14H08 5', mRNA sequence
Length = 846
Score = 172 bits (87), Expect = 2e-040
Identities = 156/182 (85%)
Strand = Plus / Plus
Query: 1 gggggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnn 60
|||| |||||||||| || |||| |||||||||||||||||| | | ||||||||
Sbjct: 662 ggggcatagaagctactgattttgatgccttcatatgcaacagtggtagcgatctttgct 721
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
||||||| |||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 722 atccatcctcaaattctgaagacatgcttagccctgcagagctcccatttatgattgatc 781
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||| | |||||||| || || ||||| ||||||||||||||||||||| |||
Sbjct: 782 ttgattatcacactcaaattgagtaccgttggggtggagaaggtttaaggaagacactaa 841
Query: 181 tt 182
||
Sbjct: 842 tt 843
>gb|AQ857674.1|AQ857674 nbeb0011A07f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0011A07f, DNA sequence
Length = 454
Score = 97.6 bits (49), Expect = 1e-017
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 332 agcactgcgttgccatgttttgtacagccatgatggtagcaagttgaatgtaattcctgt 391
||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 36 agcactgcgctgtcatgttttgtacagtcatgatggtagcaagttgaatgttattcctgt 95
Query: 392 tttggcttctcgctcacaggctttaaggt 420
||| || || || || |||||| ||||||
Sbjct: 96 tttagcatcacgatcgcaggctctaaggt 124
>gb|CB639268.1|CB639268 OSJNEa08O20.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa08O20 3', mRNA sequence
Length = 452
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 612 aaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacgg 671
|||| ||||||| ||||||| ||||||||||||||||| | || ||||||||| |||
Sbjct: 452 aaaccaggaattacttcaatcgagggatatggtccagatacccttaagtcagctttacaa 393
Query: 672 caatttggtatattgaaagac 692
|||||||||||| ||||||||
Sbjct: 392 caatttggtatactgaaagac 372
>gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 168 tggggaggagaaggtttaaggaa 190
>gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 441 tggggaggagaaggtttaaggaa 463
>gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N17 5', mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 367 tggggaggagaaggtttaaggaa 389
>dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111F20, full
insert sequence
Length = 1067
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 2 tggggaggagaaggtttaaggaa 24
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 3325695 tggggaggagaaggtttaaggaa 3325673
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 142414 tggggaggagaaggtttaaggaa 142392
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017B12
Length = 157424
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 15308 tggggaggagaaggtttaaggaa 15286
>gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014670, whole
genome shotgun sequence
Length = 47074
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 10988 tggggaggagaaggtttaaggaa 10966
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 7201971 tggggaggagaaggtttaaggaa 7201949
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 24900708 tggggaggagaaggtttaaggaa 24900686
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaaggaa 172
|||||||||||||||||||||||
Sbjct: 25860210 tggggaggagaaggtttaaggaa 25860188
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,431,031
Number of Sequences: 438736
Number of extensions: 1431031
Number of successful extensions: 10280
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10054
Number of HSP's gapped (non-prelim): 221
length of query: 1005
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 984
effective length of database: 2,791,206,460
effective search space: 2746547156640
effective search space used: 2746547156640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)