BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF278557.1|CF278557 14ETL--04-I04.g1 Rice etiolated leaf... 72 4e-010
gb|CF281026.1|CF281026 14ETL--07-O17.g1 Rice etiolated leaf... 72 4e-010
dbj|AK060010.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK070201.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK105938.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 ... 72 4e-010
gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 ... 72 4e-010
gb|AACV01008143.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AK100767.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 68 6e-009
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|AACV01006425.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 68 6e-009
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|CV728855.1|CV728855 FLO--01-G09.g1 Rice flower lambda ph... 64 1e-007
dbj|AK110700.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
ref|XM_472389.1| Oryza sativa (japonica cultivar-group), p... 58 6e-006
ref|NT_107197.1| Oryza sativa (japonica cultivar-group) 58 6e-006
emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromoso... 58 6e-006
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AP004333.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (j... 52 4e-004
dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 52 4e-004
gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 ... 52 4e-004
gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CB650485.1|CB650485 OSJNEb14P07.r OSJNEb Oryza sativa (j... 44 0.093
dbj|AK102337.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.37
gb|AC105731.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nippo... 42 0.37
gb|AACV01006035.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01006064.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01006065.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
ref|XM_470576.1| Oryza sativa (japonica cultivar-group), p... 42 0.37
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.37
>gb|CF278557.1|CF278557 14ETL--04-I04.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--04-I04, mRNA sequence
Length = 410
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 306 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 247
Query: 359 ggaggctt 366
|| |||||
Sbjct: 246 ggtggctt 239
>gb|CF281026.1|CF281026 14ETL--07-O17.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--07-O17, mRNA sequence
Length = 603
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 371 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 312
Query: 359 ggaggctt 366
|| |||||
Sbjct: 311 ggtggctt 304
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 536 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 477
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 476 cagggcgagcgc 465
>dbj|AK060010.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E01, full
insert sequence
Length = 1166
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 856 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 915
Query: 359 ggaggctt 366
|| |||||
Sbjct: 916 ggtggctt 923
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 691 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 750
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 751 cagggcgagcgc 762
>dbj|AK070201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042C15, full
insert sequence
Length = 1169
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 860 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 919
Query: 359 ggaggctt 366
|| |||||
Sbjct: 920 ggtggctt 927
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 695 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 754
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 755 cagggcgagcgc 766
>dbj|AK105938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B09, full
insert sequence
Length = 1166
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 856 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 915
Query: 359 ggaggctt 366
|| |||||
Sbjct: 916 ggtggctt 923
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 691 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 750
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 751 cagggcgagcgc 762
>gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence,
complete sequence
Length = 126862
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 8496 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 8555
Query: 359 ggaggctt 366
|| |||||
Sbjct: 8556 ggtggctt 8563
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 8331 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 8390
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 8391 cagggcgagcgc 8402
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete
sequence
Length = 166888
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 27953 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 27894
Query: 359 ggaggctt 366
|| |||||
Sbjct: 27893 ggtggctt 27886
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 28118 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 28059
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 28058 cagggcgagcgc 28047
>gb|AACV01008143.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008143, whole
genome shotgun sequence
Length = 36472
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 9895 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 9836
Query: 359 ggaggctt 366
|| |||||
Sbjct: 9835 ggtggctt 9828
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 10060 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 10001
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 10000 cagggcgagcgc 9989
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 293534 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 293593
Query: 359 ggaggctt 366
|| |||||
Sbjct: 293594 ggtggctt 293601
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 293369 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 293428
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 293429 cagggcgagcgc 293440
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 1356915 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 1356956
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 7329793 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 7329852
Query: 359 ggaggctt 366
|| |||||
Sbjct: 7329853 ggtggctt 7329860
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 7329628 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 7329687
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 7329688 cagggcgagcgc 7329699
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 8424237 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 8424278
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 34595956 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 34596015
Query: 359 ggaggctt 366
|| |||||
Sbjct: 34596016 ggtggctt 34596023
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 10752678 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 10752737
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 10752738 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 10752783
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 34595791 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 34595850
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 34595851 cagggcgagcgc 34595862
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 35690400 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 35690441
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5480849 gaattcacgcatatagttgct 5480829
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5479878 gaattcacgcatatagttgct 5479858
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 5072932 ggccagcgtggccagcgccat 5072952
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 33727599 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 33727658
Query: 359 ggaggctt 366
|| |||||
Sbjct: 33727659 ggtggctt 33727666
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 10472838 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 10472897
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 10472898 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 10472943
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 33727434 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 33727493
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 33727494 cagggcgagcgc 33727505
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 34789790 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 34789831
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5267853 gaattcacgcatatagttgct 5267833
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 4869976 ggccagcgtggccagcgccat 4869996
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||||||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 33637127 gtgctctacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 33637186
Query: 359 ggaggctt 366
|| |||||
Sbjct: 33637187 ggtggctt 33637194
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 10474737 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 10474796
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 10474797 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 10474842
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | ||||||
Sbjct: 33636962 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatctgccc 33637021
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 33637022 cagggcgagcgc 33637033
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 34699718 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 34699759
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5268638 gaattcacgcatatagttgct 5268618
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 4870761 ggccagcgtggccagcgccat 4870781
>dbj|AK100767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119K22, full
insert sequence
Length = 1175
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 636 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 695
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 696 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 741
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 30550 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 30609
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 30610 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 30655
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10,
complete sequence
Length = 139714
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 131290 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 131349
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 131350 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 131395
>gb|AACV01006425.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006425, whole
genome shotgun sequence
Length = 21315
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 10567 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 10508
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 10507 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 10462
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 1818654 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 1818713
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 1818714 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 1818759
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 67.9 bits (34), Expect = 6e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgcc 109
|||||||||| |||||| || |||||||||||| | || ||||||||||||| || ||||
Sbjct: 10560316 ggcccgcacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgccgcc 10560375
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
||||||||| |||||| | |||||||||||| | |||||||
Sbjct: 10560376 tgcgagctcggcgcccacggcatccgcgtcaactgcatctccccct 10560421
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5288487 gaattcacgcatatagttgct 5288467
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 5287516 gaattcacgcatatagttgct 5287496
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 4880570 ggccagcgtggccagcgccat 4880590
>gb|CV728855.1|CV728855 FLO--01-G09.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-G09,
mRNA sequence
Length = 478
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggac 358
||||| ||| |||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct: 289 gtgctttacttggcaagcgatgaagcgaggtacatcagcgcgctcaacctcatggtggat 230
Query: 359 ggaggctt 366
|| |||||
Sbjct: 229 ggtggctt 222
Score = 56.0 bits (28), Expect = 2e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 134 cgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgccgcacctgccc 193
||||| |||||||| || |||||||| ||||||||||| || || |||||| | |||||
Sbjct: 454 cgcgtgaactgcgtatctccctatgcagtgcccacggctctctccatgccgtatttgccc 395
Query: 194 cagggcgcgcgc 205
||||||| ||||
Sbjct: 394 cagggcgagcgc 383
>dbj|AK110700.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-B08, full
insert sequence
Length = 1055
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtc 150
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 608 gcggagctgggccgccacgggatccgcgtcaactgcgtgtc 648
>ref|XM_472389.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtc 150
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 550 gcggagctgggccgccacgggatccgcgtcaactgcgtgtc 590
>ref|NT_107197.1| Oryza sativa (japonica cultivar-group)
Length = 297308
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtc 150
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 273390 gcggagctgggccgccacgggatccgcgtcaactgcgtgtc 273350
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
complete sequence
Length = 112404
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtc 150
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 88486 gcggagctgggccgccacgggatccgcgtcaactgcgtgtc 88446
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtc 150
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 20118581 gcggagctgggccgccacgggatccgcgtcaactgcgtgtc 20118541
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0034A04
Length = 151263
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 27803 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 27752
>dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B21, full
insert sequence
Length = 1221
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 650 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 701
>gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017061, whole
genome shotgun sequence
Length = 10712
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 10303 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 10354
>ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1221
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 650 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 701
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 16977886 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 16977835
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 14962992 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 14962941
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 28362431 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 28362380
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 50 ggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||||||||| |||||||| |||||||||||| | || |||||||||||||
Sbjct: 29364881 ggcccgcacgcgtacacggcctccaagcacgccctagtggggctcaccaaga 29364830
>gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05G23 5', mRNA sequence
Length = 719
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 510 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 551
>dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full
insert sequence
Length = 1042
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 550 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 591
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 157435 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 157476
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
sequence
Length = 164352
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 162932 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 162891
>gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008216, whole
genome shotgun sequence
Length = 21283
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 17293 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 17334
>ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 783
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 505 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 546
>ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1369
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 877 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 918
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 113 gagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 1421 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtccccc 1462
>gb|CB650485.1|CB650485 OSJNEb14P07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14P07 3', mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.093
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 125 cacggggtgcgcgtcaactgcgtgtccccc 154
||||| |||||||| |||||||||||||||
Sbjct: 509 cacggcgtgcgcgtgaactgcgtgtccccc 480
>dbj|AK102337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A16, full
insert sequence
Length = 2375
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 443 gaattcacgcatatagttgct 463
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
complete sequence
Length = 159092
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 124786 ggccagcgtggccagcgccat 124766
>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
clone OSJNBa0021H20, complete sequence
Length = 133079
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 92040 gaattcacgcatatagttgct 92020
>gb|AACV01006035.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006035, whole
genome shotgun sequence
Length = 50254
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 17154 ggccagcgtggccagcgccat 17174
>gb|AACV01006064.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006064,
whole genome shotgun sequence
Length = 2098
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 404 gaattcacgcatatagttgct 424
>gb|AACV01006065.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006065,
whole genome shotgun sequence
Length = 46539
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 518 gaattcacgcatatagttgct 498
>ref|XM_470576.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1254
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 1131 ggccagcgtggccagcgccat 1111
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 gaattcacgcatatagttgct 570
|||||||||||||||||||||
Sbjct: 432186 gaattcacgcatatagttgct 432166
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 ggccagcgtggccagcgccat 39
|||||||||||||||||||||
Sbjct: 34307 ggccagcgtggccagcgccat 34327
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 947,909
Number of Sequences: 438736
Number of extensions: 947909
Number of successful extensions: 5450
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5128
Number of HSP's gapped (non-prelim): 322
length of query: 652
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 631
effective length of database: 2,791,206,460
effective search space: 1761251276260
effective search space used: 1761251276260
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)