BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060648.1| Oryza sativa (japonica cultivar-group) cDNA... 236 1e-059
dbj|AK067950.1| Oryza sativa (japonica cultivar-group) cDNA... 236 1e-059
gb|AQ288444.1|AQ288444 nbxb0033K03r CUGI Rice BAC Library O... 167 8e-039
gb|AQ510268.1|AQ510268 nbxb0095G21r CUGI Rice BAC Library O... 167 8e-039
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 167 8e-039
dbj|AP004324.2| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
gb|AACV01014882.1| Oryza sativa (japonica cultivar-group) c... 167 8e-039
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
dbj|AK065704.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
ref|XM_464081.1| Oryza sativa (japonica cultivar-group), mRNA 109 2e-021
gb|CB676292.1|CB676292 OSJNEe12H08.r OSJNEe Oryza sativa (j... 76 2e-011
gb|AU174930.1|AU174930 AU174930 Rice cDNA from leaf Oryza s... 70 1e-009
gb|CB665543.1|CB665543 OSJNEd12A13.f OSJNEd Oryza sativa (j... 70 1e-009
gb|CF325238.1|CF325238 JMT1--02-L04.g1 AtJMT-overexpressing... 70 1e-009
gb|CF326382.1|CF326382 JMT1--05-O13.g1 AtJMT-overexpressing... 70 1e-009
dbj|AK061987.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AK063486.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AK069306.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AK109510.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
ref|XM_475467.1| Oryza sativa (japonica cultivar-group), p... 70 1e-009
gb|CF319563.1|CF319563 HD--10-B19.b1 OsHDAC1-overexpressing... 62 4e-007
gb|CF324083.1|CF324083 HDN--05-J09.g1 OsHDAC1-overexpressin... 60 1e-006
ref|XM_468375.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-006
dbj|AG206658.1| Oryza sativa (japonica cultivar-group) DNA,... 56 2e-005
dbj|AB157145.1| Oryza sativa (japonica cultivar-group) DNA,... 56 2e-005
dbj|AP004061.1| Oryza sativa (japonica cultivar-group) chro... 56 2e-005
dbj|AP005647.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AACV01003306.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AQ256953.1|AQ256953 nbxb0017A14f CUGI Rice BAC Library O... 52 3e-004
gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone... 52 3e-004
gb|AC129718.2| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|AACV01012456.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AC137547.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
ref|XM_482484.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.005
gb|AU065238.1|AU065238 AU065238 Rice cDNA from immature lea... 46 0.021
gb|CF319701.1|CF319701 HD--10-E21.b1 OsHDAC1-overexpressing... 46 0.021
dbj|AK071731.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
gb|AQ327691.1|AQ327691 nbxb0041H13r CUGI Rice BAC Library O... 44 0.083
dbj|AP003885.1| Oryza sativa (japonica cultivar-group) chro... 44 0.083
dbj|AP005734.4| Oryza sativa (japonica cultivar-group) geno... 44 0.083
gb|AACV01018496.1| Oryza sativa (japonica cultivar-group) c... 44 0.083
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.083
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.083
gb|CB642028.1|CB642028 OSJNEb01P20.r OSJNEb Oryza sativa (j... 42 0.33
gb|CB643235.1|CB643235 OSJNEb03M24.r OSJNEb Oryza sativa (j... 42 0.33
gb|CB644615.1|CB644615 OSJNEb05O15.r OSJNEb Oryza sativa (j... 42 0.33
gb|CB646765.1|CB646765 OSJNEb09G13.r OSJNEb Oryza sativa (j... 42 0.33
gb|CB649734.1|CB649734 OSJNEb13N09.r OSJNEb Oryza sativa (j... 42 0.33
gb|CB654134.1|CB654134 OSJNEc05N04.r OSJNEc Oryza sativa (j... 42 0.33
gb|CB663846.1|CB663846 OSJNEd09D23.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB664528.1|CB664528 OSJNEd10E18.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB665089.1|CB665089 OSJNEd11D16.f OSJNEd Oryza sativa (j... 42 0.33
gb|CB665090.1|CB665090 OSJNEd11D16.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB665167.1|CB665167 OSJNEd11F17.f OSJNEd Oryza sativa (j... 42 0.33
gb|CB665168.1|CB665168 OSJNEd11F17.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB665346.1|CB665346 OSJNEd11L02.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB665675.1|CB665675 OSJNEd12D17.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB666322.1|CB666322 OSJNEd13C22.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB666403.1|CB666403 OSJNEd13E18.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB668812.1|CB668812 OSJNEd16N11.r OSJNEd Oryza sativa (j... 42 0.33
gb|CB670147.1|CB670147 OSJNEe03B12.r OSJNEe Oryza sativa (j... 42 0.33
gb|CB670208.1|CB670208 OSJNEe03C21.r OSJNEe Oryza sativa (j... 42 0.33
gb|CB670819.1|CB670819 OSJNEe04B14.r OSJNEe Oryza sativa (j... 42 0.33
gb|CB671010.1|CB671010 OSJNEe04F24.r OSJNEe Oryza sativa (j... 42 0.33
gb|CB671930.1|CB671930 OSJNEe05L16.r OSJNEe Oryza sativa (j... 42 0.33
gb|CB677662.1|CB677662 OSJNEe14N22.f OSJNEe Oryza sativa (j... 42 0.33
gb|CB677663.1|CB677663 OSJNEe14N22.r OSJNEe Oryza sativa (j... 42 0.33
dbj|AK105625.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.33
ref|XM_469887.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
>dbj|AK060648.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G12, full
insert sequence
Length = 1764
Score = 236 bits (119), Expect = 1e-059
Identities = 208/237 (87%), Gaps = 3/237 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 691 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 750
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 751 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 810
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgagaagaatcctcatttagatgaca 289
||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 811 tgtctgagcagctagggattgccatcactgacaatgaggagagccctcggttagatgaca 870
Query: 290 tatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcaga 346
|||||||||| || || || || ||||||||||||||||||||||||||||| ||||
Sbjct: 871 tatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccaga 927
Score = 165 bits (83), Expect = 3e-038
Identities = 188/223 (84%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 954 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 1013
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 1014 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 1073
Query: 484 cctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatt 543
|||||||| |||||||| ||||||||||||||||| ||||| |||||||| || || ||
Sbjct: 1074 cctgaaaaggcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatc 1133
Query: 544 tatcatgtgaagagccatctgcagaagtatcggcttgcaaaat 586
|| ||||| ||||| ||| ||||||||||||| || |||||||
Sbjct: 1134 taccatgtaaagagtcatttgcagaagtatcgcctcgcaaaat 1176
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 566 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 625
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 626 ctcatcaagctcctccctgct 646
>dbj|AK067950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127L15, full
insert sequence
Length = 1839
Score = 236 bits (119), Expect = 1e-059
Identities = 208/237 (87%), Gaps = 3/237 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 766 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 825
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 826 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 885
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgagaagaatcctcatttagatgaca 289
||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 886 tgtctgagcagctagggattgccatcactgacaatgaggagagccctcggttagatgaca 945
Query: 290 tatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcaga 346
|||||||||| || || || || ||||||||||||||||||||||||||||| ||||
Sbjct: 946 tatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccaga 1002
Score = 165 bits (83), Expect = 3e-038
Identities = 188/223 (84%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 1029 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 1088
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 1089 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 1148
Query: 484 cctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatt 543
|||||||| |||||||| ||||||||||||||||| ||||| |||||||| || || ||
Sbjct: 1149 cctgaaaaggcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatc 1208
Query: 544 tatcatgtgaagagccatctgcagaagtatcggcttgcaaaat 586
|| ||||| ||||| ||| ||||||||||||| || |||||||
Sbjct: 1209 taccatgtaaagagtcatttgcagaagtatcgcctcgcaaaat 1251
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 641 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 700
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 701 ctcatcaagctcctccctgct 721
>gb|AQ288444.1|AQ288444 nbxb0033K03r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0033K03r, DNA sequence
Length = 650
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 292 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 351
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 352 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 411
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 412 tgtctgagcagctagggattgccatcactgacaatgag 449
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 167 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 226
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 227 ctcatcaagctcctccctgct 247
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttg 335
|||||||||||||| || || || || ||||||||| ||| |||||||||
Sbjct: 561 gacatatacggcacgccgccgcaactttcatcactttcaggatcatcttg 610
>gb|AQ510268.1|AQ510268 nbxb0095G21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0095G21r, DNA sequence
Length = 650
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 292 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 351
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 352 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 411
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 412 tgtctgagcagctagggattgccatcactgacaatgag 449
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 167 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 226
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 227 ctcatcaagctcctccctgct 247
Score = 61.9 bits (31), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
||||||||||| || || | || || ||||||||||||||||||||||||||||| |||
Sbjct: 561 gacatatacggnacgccgncgcaactttcatcacttccagtatcatcttgctccaaccag 620
Query: 346 a 346
|
Sbjct: 621 a 621
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 359416 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 359475
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 359476 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 359535
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 359536 tgtctgagcagctagggattgccatcactgacaatgag 359573
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 359291 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 359350
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 359351 ctcatcaagctcctccctgct 359371
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 359772 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 359831
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 359832 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 359891
Query: 484 cctgaaa 490
|||||||
Sbjct: 359892 cctgaaa 359898
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 359685 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 359744
Query: 346 a 346
|
Sbjct: 359745 a 359745
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 359993 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 360052
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 360053 aagagtcatttgcag 360067
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1215_E11
Length = 105301
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 76659 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 76718
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 76719 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 76778
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 76779 tgtctgagcagctagggattgccatcactgacaatgag 76816
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 76534 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 76593
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 76594 ctcatcaagctcctccctgct 76614
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 77015 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 77074
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 77075 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 77134
Query: 484 cctgaaa 490
|||||||
Sbjct: 77135 cctgaaa 77141
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 76928 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 76987
Query: 346 a 346
|
Sbjct: 76988 a 76988
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 77236 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 77295
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 77296 aagagtcatttgcag 77310
>gb|AACV01014882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014882, whole
genome shotgun sequence
Length = 13126
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Minus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 6036 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 5977
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 5976 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 5917
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 5916 tgtctgagcagctagggattgccatcactgacaatgag 5879
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 6161 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 6102
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 6101 ctcatcaagctcctccctgct 6081
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 5680 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 5621
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 5620 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 5561
Query: 484 cctgaaa 490
|||||||
Sbjct: 5560 cctgaaa 5554
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 5767 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 5708
Query: 346 a 346
|
Sbjct: 5707 a 5707
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 5459 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 5400
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 5399 aagagtcatttgcag 5385
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 10635761 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 10635820
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 10635821 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 10635880
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 10635881 tgtctgagcagctagggattgccatcactgacaatgag 10635918
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 10635636 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 10635695
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 10635696 ctcatcaagctcctccctgct 10635716
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 10636117 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 10636176
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 10636177 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 10636236
Query: 484 cctgaaa 490
|||||||
Sbjct: 10636237 cctgaaa 10636243
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 10636030 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 10636089
Query: 346 a 346
|
Sbjct: 10636090 a 10636090
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 10636338 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 10636397
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 10636398 aagagtcatttgcag 10636412
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 28334498 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 28334557
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 28334558 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 28334617
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 28334618 tgtctgagcagctagggattgccatcactgacaatgag 28334655
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 28334373 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 28334432
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 28334433 ctcatcaagctcctccctgct 28334453
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 28334854 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 28334913
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 28334914 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 28334973
Query: 484 cctgaaa 490
|||||||
Sbjct: 28334974 cctgaaa 28334980
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 28334767 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 28334826
Query: 346 a 346
|
Sbjct: 28334827 a 28334827
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 28335075 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 28335134
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 28335135 aagagtcatttgcag 28335149
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 167 bits (84), Expect = 8e-039
Identities = 140/158 (88%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 113 ctgaacagtcagatgatctgaacgacttgctcaatctttcgggag---atgcttctgatg 169
|||||||||||||||||||||| || || |||||||| || |||| ||||||||||||
Sbjct: 29209372 ctgaacagtcagatgatctgaaggatttcctcaatctctctggaggagatgcttctgatg 29209431
Query: 170 gcagcttccatggagaaaacaatgccttagcttttgacgaacagatggaatttcagttcc 229
|||||||||||||||||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 29209432 gcagcttccatggagaaaacaatgccatggcttttgctgagcagatggagttccagttct 29209491
Query: 230 tgtctgagcagctagaaattgccatcactgacaatgag 267
||||||||||||||| |||||||||||||||||||||
Sbjct: 29209492 tgtctgagcagctagggattgccatcactgacaatgag 29209529
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||| |||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 29209247 gggcactctaccattcctgcctcaccctcctaagtgtgagcagcaggtttcagcagggca 29209306
Query: 63 ctcatcgagctcctctctgct 83
|||||| |||||||| |||||
Sbjct: 29209307 ctcatcaagctcctccctgct 29209327
Score = 85.7 bits (43), Expect = 2e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 364 aaagtccagcttagctcatctcagtcatcttctagctctgcaacagctaacaagtcaaga 423
||||| ||||||||||| ||| ||||||||| | || || ||| |||||||| | ||
Sbjct: 29209728 aaagttcagcttagctcgcctcggtcatcttcgggatccgcgacaactaacaaggcgagg 29209787
Query: 424 ttgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggt 483
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 29209788 ttgaggtggacactggagctccatgagcgttttgtagaggctgtgaacaagctagatgga 29209847
Query: 484 cctgaaa 490
|||||||
Sbjct: 29209848 cctgaaa 29209854
Score = 73.8 bits (37), Expect = 9e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 29209641 gacatatacggcacgccgccgcaactttcatcacttccagtatcatcttgctccaaccag 29209700
Query: 346 a 346
|
Sbjct: 29209701 a 29209701
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||
Sbjct: 29209949 gcaactcctaaaggtgtgctgaaacttatgaaagtagaaggcctgactatctaccatgta 29210008
Query: 553 aagagccatctgcag 567
||||| ||| |||||
Sbjct: 29210009 aagagtcatttgcag 29210023
>dbj|AK065704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C19, full
insert sequence
Length = 1858
Score = 109 bits (55), Expect = 2e-021
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 999 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 1058
Query: 479 aaggtcctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaa 538
|||| || ||||| ||||||||||| ||||| ||||| || ||||||||||| || | |
Sbjct: 1059 aagggccagaaaaggcaactcccaagggtgttctgaagcttatgaaggtagagggcttga 1118
Query: 539 caatttatcatgtgaagagccatctgcagaagtatcggcttgc 581
| || |||||| | |||||||| | |||||||||||||||||
Sbjct: 1119 ccatctatcatataaagagccacttacagaagtatcggcttgc 1161
Score = 71.9 bits (36), Expect = 4e-010
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 211 cagatggaatttcagttcctgtctgagcagctagaaattgccatcactgacaatgagaag 270
|||||||| ||||||||| ||||||| ||||| | |||||| ||| | |||||||| ||
Sbjct: 779 cagatggagtttcagttcttgtctgaacagctcggaattgcgatctcaaacaatgaggag 838
Query: 271 aatcctcatttagatgacatatacggcacaccaccacagctgtcatcacttccagtatca 330
| ||||| |||||||||||||||| || |||||| || || || |||||||| |||
Sbjct: 839 agtcctcggttagatgacatatacgacagaccaccgcaacttatgtctcttccagtgtca 898
Query: 331 tcttgctc 338
||||||||
Sbjct: 899 tcttgctc 906
>ref|XM_464081.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1858
Score = 109 bits (55), Expect = 2e-021
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 999 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 1058
Query: 479 aaggtcctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaa 538
|||| || ||||| ||||||||||| ||||| ||||| || ||||||||||| || | |
Sbjct: 1059 aagggccagaaaaggcaactcccaagggtgttctgaagcttatgaaggtagagggcttga 1118
Query: 539 caatttatcatgtgaagagccatctgcagaagtatcggcttgc 581
| || |||||| | |||||||| | |||||||||||||||||
Sbjct: 1119 ccatctatcatataaagagccacttacagaagtatcggcttgc 1161
Score = 71.9 bits (36), Expect = 4e-010
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 211 cagatggaatttcagttcctgtctgagcagctagaaattgccatcactgacaatgagaag 270
|||||||| ||||||||| ||||||| ||||| | |||||| ||| | |||||||| ||
Sbjct: 779 cagatggagtttcagttcttgtctgaacagctcggaattgcgatctcaaacaatgaggag 838
Query: 271 aatcctcatttagatgacatatacggcacaccaccacagctgtcatcacttccagtatca 330
| ||||| |||||||||||||||| || |||||| || || || |||||||| |||
Sbjct: 839 agtcctcggttagatgacatatacgacagaccaccgcaacttatgtctcttccagtgtca 898
Query: 331 tcttgctc 338
||||||||
Sbjct: 899 tcttgctc 906
>gb|CB676292.1|CB676292 OSJNEe12H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12H08 3', mRNA sequence
Length = 860
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 472 aagcttgaaggtcctgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaa 531
||||||||||| || ||||| ||||||||||| ||||| ||||| || |||||||||||
Sbjct: 860 aagcttgaagggccagaaaaggcaactcccaagggtgttctgaagcttatgaaggtagag 801
Query: 532 ggtctaacaatttatcatgtgaagagccatctgcagaagtatcggcttgc 581
|| | || || |||||| | |||||||| | |||||||||||||||||
Sbjct: 800 ggcttgaccatctatcatataaagagccacttacagaagtatcggcttgc 751
>gb|AU174930.1|AU174930 AU174930 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F0065, mRNA sequence
Length = 410
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 346 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 392
>gb|CB665543.1|CB665543 OSJNEd12A13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12A13 5', mRNA sequence
Length = 839
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 291 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 337
>gb|CF325238.1|CF325238 JMT1--02-L04.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--02-L04, mRNA sequence
Length = 603
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 406 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 452
>gb|CF326382.1|CF326382 JMT1--05-O13.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-O13, mRNA sequence
Length = 555
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 406 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 452
>dbj|AK061987.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B07, full
insert sequence
Length = 1535
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 650 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 696
>dbj|AK063486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C05, full
insert sequence
Length = 2003
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 486 tgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaattta 545
||||||||| ||||| ||||||||||| || || ||||| || || ||| | ||||| ||
Sbjct: 1068 tgaaaaagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatcta 1127
Query: 546 tcatgtgaagagccatctgcagaagta 572
|||||| ||||| ||||||||||||||
Sbjct: 1128 tcatgttaagagtcatctgcagaagta 1154
>dbj|AK069306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H08, full
insert sequence
Length = 1823
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 581 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 627
>dbj|AK109510.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D09, full
insert sequence
Length = 1750
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 486 tgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaattta 545
||||||||| ||||| ||||||||||| || || ||||| || || ||| | ||||| ||
Sbjct: 1046 tgaaaaagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatcta 1105
Query: 546 tcatgtgaagagccatctgcagaagta 572
|||||| ||||| ||||||||||||||
Sbjct: 1106 tcatgttaagagtcatctgcagaagta 1132
>ref|XM_475467.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 774
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 256 acaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaa 302
>gb|CF319563.1|CF319563 HD--10-B19.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--10-B19, mRNA sequence
Length = 531
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
|||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 386 acaatttatcatgtgaagagccatttgcagaaatatcaccttgcaaa 432
>gb|CF324083.1|CF324083 HDN--05-J09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--05-J09, mRNA sequence
Length = 565
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 430 tggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggtcctgaa 489
||||||| |||||| |||||||| ||||| || || || || ||||||| || ||||
Sbjct: 370 tggacacctgagctccatgagcggtttgttgatgctgttaacaagcttggtggaagtgaa 429
Query: 490 aaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcat 549
||||||||||| |||| ||| | |||| | |||||||| || || |||| || || |||
Sbjct: 430 aaagcaactccaaaagctgtccagaaagttatgaaggttgacggcttaactatataccat 489
Query: 550 gtgaagagccatctgcagaagtatcg 575
|| || |||||||| |||||||||||
Sbjct: 490 gtaaaaagccatctacagaagtatcg 515
>ref|XM_468375.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1224
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 430 tggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttgaaggtcctgaa 489
||||||| |||||| |||||||| ||||| || || || || ||||||| || ||||
Sbjct: 721 tggacacctgagctccatgagcggtttgttgatgctgttaacaagcttggtggaagtgaa 780
Query: 490 aaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcat 549
||||||||||| |||| ||| | |||| | |||||||| || || |||| || || |||
Sbjct: 781 aaagcaactccaaaagctgtccagaaagttatgaaggttgacggcttaactatataccat 840
Query: 550 gtgaagagccatctgcagaagtatcg 575
|| || |||||||| |||||||||||
Sbjct: 841 gtaaaaagccatctacagaagtatcg 866
>dbj|AG206658.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND5051_0_704_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND5051, genomic survey sequence
Length = 319
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 183 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 124
Query: 479 aagg 482
||||
Sbjct: 123 aagg 120
>dbj|AB157145.1| Oryza sativa (japonica cultivar-group) DNA, clone:T33847T, 3'
flanking sequence of Tos17 insertion in rice strain
NG5556, genomic survey sequence
Length = 492
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 269 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 328
Query: 479 aagg 482
||||
Sbjct: 329 aagg 332
>dbj|AP004061.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1407_E09, ***
SEQUENCING IN PROGRESS ***
Length = 133387
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 127206 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 127147
Query: 479 aagg 482
||||
Sbjct: 127146 aagg 127143
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 127044 gcaactcccaagggtgttctgaagcttatgaaggtaga 127007
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0026E05
Length = 159860
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 127374 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 127315
Query: 479 aagg 482
||||
Sbjct: 127314 aagg 127311
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 127212 gcaactcccaagggtgttctgaagcttatgaaggtaga 127175
>gb|AACV01003306.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003306, whole
genome shotgun sequence
Length = 29945
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 4502 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 4443
Query: 479 aagg 482
||||
Sbjct: 4442 aagg 4439
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 4340 gcaactcccaagggtgttctgaagcttatgaaggtaga 4303
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 2077166 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 2077107
Query: 479 aagg 482
||||
Sbjct: 2077106 aagg 2077103
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2077004 gcaactcccaagggtgttctgaagcttatgaaggtaga 2076967
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 2098751 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 2098692
Query: 479 aagg 482
||||
Sbjct: 2098691 aagg 2098688
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2098589 gcaactcccaagggtgttctgaagcttatgaaggtaga 2098552
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 2098751 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 2098692
Query: 479 aagg 482
||||
Sbjct: 2098691 aagg 2098688
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2098589 gcaactcccaagggtgttctgaagcttatgaaggtaga 2098552
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 419 caagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtgaaaaagcttg 478
||||| |||||||||||| ||||| || |||||||| || || |||||||| |||||||
Sbjct: 2077166 caagactgaggtggacaccggagctccacgagcgtttcgtagatgccgtgaacaagcttg 2077107
Query: 479 aagg 482
||||
Sbjct: 2077106 aagg 2077103
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtaga 530
||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2077004 gcaactcccaagggtgttctgaagcttatgaaggtaga 2076967
>gb|AQ256953.1|AQ256953 nbxb0017A14f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0017A14f, DNA sequence
Length = 665
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 552 acaatttatcatgtgaagagccatttgcag 523
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene
region
Length = 58956
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 2016 acaatttatcatgtgaagagccatttgcag 2045
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0088I06, complete sequence
Length = 187651
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 78872 acaatttatcatgtgaagagccatttgcag 78843
>gb|AACV01012456.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012456, whole
genome shotgun sequence
Length = 46924
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 44834 acaatttatcatgtgaagagccatttgcag 44805
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 400335 acaatttatcatgtgaagagccatttgcag 400306
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 6396454 acaatttatcatgtgaagagccatttgcag 6396425
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 23696767 acaatttatcatgtgaagagccatttgcag 23696738
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 538 acaatttatcatgtgaagagccatctgcag 567
|||||||||||||||||||||||| |||||
Sbjct: 24010383 acaatttatcatgtgaagagccatttgcag 24010354
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
complete sequence
Length = 144969
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 122867 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 122926
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 122927 ttaagagtcatctgcag 122943
>gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006539, whole
genome shotgun sequence
Length = 40585
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 31070 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 31129
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 31130 ttaagagtcatctgcag 31146
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 3444547 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 3444606
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 3444607 ttaagagtcatctgcag 3444623
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 12198279 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 12198338
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 12198339 ttaagagtcatctgcag 12198355
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 12390641 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 12390700
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 12390701 ttaagagtcatctgcag 12390717
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 12099050 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 12099109
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 12099110 ttaagagtcatctgcag 12099126
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||| ||||| ||||||||||| || || ||||| || || ||| | ||||| |||||||
Sbjct: 12102287 aagctactccaaaaggtgtgctcaagcttatgaaagttgatggtttgacaatctatcatg 12102346
Query: 551 tgaagagccatctgcag 567
| ||||| |||||||||
Sbjct: 12102347 ttaagagtcatctgcag 12102363
>ref|XM_482484.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1278
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 546 tcatgtgaagagccatctgcagaagtat 573
||||||||||||||||||||||| ||||
Sbjct: 921 tcatgtgaagagccatctgcagatgtat 948
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 744,747
Number of Sequences: 438736
Number of extensions: 744747
Number of successful extensions: 17289
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16594
Number of HSP's gapped (non-prelim): 683
length of query: 586
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 565
effective length of database: 2,791,206,460
effective search space: 1577031649900
effective search space used: 1577031649900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)