BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071667.2.1
(597 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (jap... 329 1e-087
gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA ... 329 1e-087
dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA... 329 1e-087
ref|NM_192584.1| Oryza sativa (japonica cultivar-group), p... 329 1e-087
gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (jap... 315 1e-083
dbj|AP003048.2| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) c... 276 1e-071
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 276 1e-071
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 276 1e-071
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 276 1e-071
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (jap... 268 3e-069
gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japoni... 206 1e-050
gb|AU031992.1|AU031992 AU031992 Rice root Oryza sativa (jap... 139 2e-030
gb|CF295208.1|CF295208 30DGS--05-A15.g1 Rice leaf plasmid c... 100 2e-018
gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sati... 78 6e-012
gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sati... 78 6e-012
gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering s... 78 6e-012
dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH... 78 6e-012
dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
ref|NM_192582.1| Oryza sativa (japonica cultivar-group), p... 78 6e-012
dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (jap... 72 4e-010
gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing ... 72 4e-010
gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (jap... 64 9e-008
dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA,... 58 6e-006
dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chro... 58 6e-006
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
dbj|AP003617.3| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA l... 56 2e-005
dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AP000615.1| Oryza sativa (japonica cultivar-group) geno... 42 0.34
gb|AC099739.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|AACV01005800.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 42 0.34
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 42 0.34
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.34
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
>gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 507
Score = 329 bits (166), Expect = 1e-087
Identities = 271/306 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 283
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 282 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 223
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 222 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 163
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 162 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 103
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccg 591
||||||||||| ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct: 102 ttggccttctctatcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccg 43
Query: 592 aagatc 597
||||||
Sbjct: 42 aagatc 37
>gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030024000_PLATE_H06_48_058.ab1 similar to putative
cytosolic aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 772
Score = 329 bits (166), Expect = 1e-087
Identities = 271/306 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 373 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 314
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 313 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 254
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 253 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 194
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 193 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 134
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccg 591
||||||||||| ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct: 133 ttggccttctctatcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccg 74
Query: 592 aagatc 597
||||||
Sbjct: 73 aagatc 68
>dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038G01, full
insert sequence
Length = 1961
Score = 329 bits (166), Expect = 1e-087
Identities = 271/306 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1683 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 1624
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1623 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 1564
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 1563 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 1504
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 1503 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 1444
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccg 591
||||||||||| ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct: 1443 ttggccttctctatcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccg 1384
Query: 592 aagatc 597
||||||
Sbjct: 1383 aagatc 1378
>ref|NM_192584.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1524
Score = 329 bits (166), Expect = 1e-087
Identities = 271/306 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1520 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 1461
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1460 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 1401
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 1400 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 1341
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 1340 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 1281
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccg 591
||||||||||| ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct: 1280 ttggccttctctatcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccg 1221
Query: 592 aagatc 597
||||||
Sbjct: 1220 aagatc 1215
>gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 611
Score = 315 bits (159), Expect = 1e-083
Identities = 264/299 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 283
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 282 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 223
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 222 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 163
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 162 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 103
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggcc 590
||||||||||| ||| |||| || |||||||||||||||||||||||||| || |||||
Sbjct: 102 ttggccttctctatcgcctcctccaccgtcttgaacttcatgagggacatcaccgggcc 44
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0710A02
Length = 157201
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 47696 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 47637
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 47636 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 47577
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 47576 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 47517
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 47516 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 47457
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 47456 ttggccttctctatcgcctcctccaccgtcctgaa 47422
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 34258 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 34199
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 47315 cttgaacttcatgagggacatcaccgggccgaagatc 47279
>gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001715, whole
genome shotgun sequence
Length = 24589
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 19693 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 19634
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 19633 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 19574
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 19573 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 19514
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 19513 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 19454
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 19453 ttggccttctctatcgcctcctccaccgtcctgaa 19419
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 6279 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 6220
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 19312 cttgaacttcatgagggacatcaccgggccgaagatc 19276
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 23194254 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 23194195
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 23194194 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 23194135
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 23194134 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 23194075
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 23194074 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 23194015
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 23194014 ttggccttctctatcgcctcctccaccgtcctgaa 23193980
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 23180816 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 23180757
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 23193873 cttgaacttcatgagggacatcaccgggccgaagatc 23193837
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 6112486 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 6112427
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 6112426 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 6112367
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 6112366 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 6112307
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 6112306 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 6112247
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 6112246 ttggccttctctatcgcctcctccaccgtcctgaa 6112212
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 6099048 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 6098989
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 6112105 cttgaacttcatgagggacatcaccgggccgaagatc 6112069
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 6039840 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 6039781
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 6039780 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 6039721
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 6039720 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 6039661
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 6039660 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 6039601
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 6039600 ttggccttctctatcgcctcctccaccgtcctgaa 6039566
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 6026426 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 6026367
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 6039459 cttgaacttcatgagggacatcaccgggccgaagatc 6039423
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 22664963 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 22664904
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 22664903 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 22664844
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 22664843 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 22664784
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 22664783 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 22664724
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 22664723 ttggccttctctatcgcctcctccaccgtcctgaa 22664689
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 22651549 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 22651490
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 22664582 cttgaacttcatgagggacatcaccgggccgaagatc 22664546
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 276 bits (139), Expect = 1e-071
Identities = 241/275 (87%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 23115537 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 23115478
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 23115477 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 23115418
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 23115417 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 23115358
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 23115357 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 23115298
Query: 532 ttggccttctcgatcacctcatcaaccgtcttgaa 566
||||||||||| ||| |||| || |||||| ||||
Sbjct: 23115297 ttggccttctctatcgcctcctccaccgtcctgaa 23115263
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 23102099 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 23102040
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||| || ||||||||||||
Sbjct: 23115156 cttgaacttcatgagggacatcaccgggccgaagatc 23115120
>gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0094_21A, mRNA sequence
Length = 502
Score = 268 bits (135), Expect = 3e-069
Identities = 222/251 (88%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 199
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 198 gcgaccatcccttggtcccggccgaacccgctcatcttgtacccgccgaacggcgcgtcg 139
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacc 471
|||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 138 gggtcgaaggcgaagtagcagttcacccacaccgtgccggcccgcactgacctcgacacc 79
Query: 472 cgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcag 531
||||| | || ||| |||||||||| || ||||| || ||||||||| ||||||||
Sbjct: 78 atgttggcaatgttgaggttcttggtcacaatgccggcagccagcccgtacttggtgcag 19
Query: 532 ttggccttctc 542
|||||||||||
Sbjct: 18 ttggccttctc 8
>gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 343
Score = 206 bits (104), Expect = 1e-050
Identities = 156/172 (90%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 292 taccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtccatg 351
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 174 taccagggcgagtccgggacggcggtgatgacggtcttgacctgcaggtacttgtccatg 115
Query: 352 gctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtcc 411
|| ||| ||| |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 114 gcgaccatcccttggtcccggccgaacccgctcatcttgtaccc-ccgaacggcgcgtcg 56
Query: 412 gggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgacc 463
||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 55 gggtcgaaggcgaagtagcagttcacccacaacgtgccggcccgcactgacc 4
>gb|AU031992.1|AU031992 AU031992 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3072_8Z, mRNA sequence
Length = 457
Score = 139 bits (70), Expect = 2e-030
Identities = 138/154 (89%), Gaps = 5/154 (3%)
Strand = Plus / Minus
Query: 313 gcggtgatgacgctcttgacctgcaggtacttgtccatggctgccagcccctggtccc-g 371
|||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||| |
Sbjct: 167 gcggtgatgacggtcttgacctgcaggtacttgtccatggcgaccatcccttggtcccgg 108
Query: 372 gccgaagccgct-catcttgtacccgccgaa-gggcgcgtccgggtcgaaggcgaagtag 429
|||||| ||||| |||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 107 gccgaacccgctncatcttgtacccgccgaacgggcg-ttcggggtcgaaggcgaa-tag 50
Query: 430 cagttcacccacacggtgccggcgcgcaccgacc 463
|||||||||||||| |||||||| ||||| ||||
Sbjct: 49 cagttcacccacaccgtgccggcccgcactgacc 16
>gb|CF295208.1|CF295208 30DGS--05-A15.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--05-A15, mRNA sequence
Length = 368
Score = 99.6 bits (50), Expect = 2e-018
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 288 tcaataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtc 347
||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 277 tcaataccagggcgagtccgggacggcggggatgacgggcttgacctgcaggtacttgtc 336
Query: 348 catggctgccagcccctggtcccggccgaa 377
|||||| ||| ||| ||||||||||||||
Sbjct: 337 catggcgaccatcccttggtcccggccgaa 366
>gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_1A, mRNA sequence
Length = 507
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 319 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 260
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 259 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 201
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 376 aagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaag 420
|||||||||||||||||||| ||||| ||| |||| |||||||||
Sbjct: 424 aagccgctcatcttgtaccccccgaacggcacgtcggggtcgaag 380
>gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_2Z, mRNA sequence
Length = 712
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 354 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 295
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 294 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 236
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 460 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 401
>gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1762, mRNA sequence
Length = 589
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 235 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 176
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 175 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 117
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 341 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 282
>dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH1a mRNA for cytosolic
aldehyde dehydrogenase, complete cds
Length = 1751
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 1381 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 1322
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 1321 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 1263
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 1487 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 1428
>dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A10, full
insert sequence
Length = 1854
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 1435 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 1376
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 1375 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 1317
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 1541 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 1482
>dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144F17, full
insert sequence
Length = 1732
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 1393 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 1334
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 1333 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 1275
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 1499 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 1440
>ref|NM_192582.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1509
Score = 77.8 bits (39), Expect = 6e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 1319 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 1260
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagat 596
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 1259 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaagat 1201
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 1425 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 1366
>dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E03, full
insert sequence
Length = 1729
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 478 gcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcc 537
|||||||| | | ||||||| || || ||||| || || ||||||| ||||| ||| |||
Sbjct: 1390 gcgacgtcgatgttcttggtgactatgccggcagccaggccgtaccgggtgctgttcgcc 1331
Query: 538 ttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaag 594
|||| |||| |||| |||||||||||||| |||||||||| ||| || || ||||||
Sbjct: 1330 ttctggatcgcctcctcaaccgtcttgaatttcatgagggccatcaccggcccgaag 1274
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 1496 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 1437
>gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1467, mRNA sequence
Length = 584
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 336 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 277
Score = 71.9 bits (36), Expect = 4e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 491 tcttggtcacgatcccggcggcgagcccgtacctggtgcagttggccttctcgatcacct 550
||||||| || || ||||| || || ||||||| ||||| ||| ||||||| |||| |||
Sbjct: 215 tcttggtgactatgccggcagccaggccgtaccgggtgctgttcgccttctggatcgcct 156
Query: 551 catcaaccgtcttgaacttcatgagggacatgacggggcc 590
| |||||||||||||| |||||||||| ||| || |||||
Sbjct: 155 cctcaaccgtcttgaatttcatgagggccatcaccgggcc 116
>gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-E11, mRNA sequence
Length = 455
Score = 71.9 bits (36), Expect = 4e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||||
Sbjct: 347 gccgaagccgctcatcttgtaccccccgaacggcacgtcggggtcgaagccgaggtagca 406
>gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0506_11A, mRNA sequence
Length = 500
Score = 63.9 bits (32), Expect = 9e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 517 ccgtacctggtgcagttggccttctcgatcacctcatcaaccgtcttgaacttcatgagg 576
||||||| ||||| ||| ||||||| |||| |||| |||||||||||||| |||||||||
Sbjct: 497 ccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttcatgagg 438
>dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF6027_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF6027, genomic survey sequence
Length = 560
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 18 cttgaacttcatcaggcacatgacggggccgaagatc 54
>dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1111_E06,
*** SEQUENCING IN PROGRESS ***
Length = 141036
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 30033 cttgaacttcatcaggcacatgacggggccgaagatc 29997
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 30394 ggcgaagtagcagttcacccacac 30371
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 373446 cttgaacttcatcaggcacatgacggggccgaagatc 373410
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 373807 ggcgaagtagcagttcacccacac 373784
>gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014457, whole
genome shotgun sequence
Length = 8373
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 3598 cttgaacttcatcaggcacatgacggggccgaagatc 3634
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 3237 ggcgaagtagcagttcacccacac 3260
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0502H06
Length = 165630
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 82842 cttgaacttcatcaggcacatgacggggccgaagatc 82806
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 83203 ggcgaagtagcagttcacccacac 83180
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 4242656 cttgaacttcatcaggcacatgacggggccgaagatc 4242620
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 4243017 ggcgaagtagcagttcacccacac 4242994
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 21941393 cttgaacttcatcaggcacatgacggggccgaagatc 21941357
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 21941754 ggcgaagtagcagttcacccacac 21941731
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 561 cttgaacttcatgagggacatgacggggccgaagatc 597
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 22908020 cttgaacttcatcaggcacatgacggggccgaagatc 22907984
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 22908381 ggcgaagtagcagttcacccacac 22908358
>gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 650
Score = 56.0 bits (28), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 559 gtcttgaacttcatgagggacatgacggggccgaagatc 597
||||||||||||||||||||||| || || |||||||||
Sbjct: 620 gtcttgaacttcatgagggacatcaccggnccgaagatc 582
>dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B11, full
insert sequence
Length = 502
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacac 443
||||||||||||||||||||||||
Sbjct: 222 ggcgaagtagcagttcacccacac 199
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
clone:P0043E01
Length = 154128
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 72668 tataaaacaagagtttatatg 72688
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
complete sequence
Length = 87592
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 68427 tataaaacaagagtttatatg 68447
>gb|AACV01005800.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005800, whole
genome shotgun sequence
Length = 32895
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 25400 tataaaacaagagtttatatg 25380
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 1660979 tataaaacaagagtttatatg 1660999
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 72668 tataaaacaagagtttatatg 72688
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 1668134 tataaaacaagagtttatatg 1668154
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 1860496 tataaaacaagagtttatatg 1860516
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 1660203 tataaaacaagagtttatatg 1660223
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tataaaacaagagtttatatg 96
|||||||||||||||||||||
Sbjct: 1660205 tataaaacaagagtttatatg 1660225
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 748,918
Number of Sequences: 438736
Number of extensions: 748918
Number of successful extensions: 17832
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17376
Number of HSP's gapped (non-prelim): 439
length of query: 597
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 576
effective length of database: 2,791,206,460
effective search space: 1607734920960
effective search space used: 1607734920960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)