BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) c... 62 9e-007
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 62 9e-007
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 62 9e-007
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 62 9e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 9e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 9e-007
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 56 5e-005
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 56 5e-005
gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature lea... 54 2e-004
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 54 2e-004
emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC O... 54 2e-004
gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|C26012.1|C26012 C26012 Rice callus cDNA Oryza sativa (ja... 52 9e-004
dbj|AK059902.1| Oryza sativa (japonica cultivar-group) cDNA... 52 9e-004
dbj|AK102619.1| Oryza sativa (japonica cultivar-group) cDNA... 52 9e-004
dbj|AP004344.3| Oryza sativa (japonica cultivar-group) geno... 52 9e-004
gb|AACV01015571.1| Oryza sativa (japonica cultivar-group) c... 52 9e-004
gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) c... 52 9e-004
ref|NM_186842.2| Oryza sativa (japonica cultivar-group), mRNA 52 9e-004
ref|XM_506242.1| PREDICTED Oryza sativa (japonica cultivar-... 52 9e-004
dbj|AP005183.3| Oryza sativa (japonica cultivar-group) geno... 52 9e-004
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 52 9e-004
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 9e-004
gb|C72577.1|C72577 C72577 Rice panicle at flowering stage O... 50 0.003
gb|C73031.1|C73031 C73031 Rice panicle at flowering stage O... 50 0.003
gb|BP432958.1|BP432958 BP432958 Oryza sativa (japonica cult... 50 0.003
gb|CF326191.1|CF326191 JMT1--05-F19.g1 AtJMT-overexpressing... 50 0.003
gb|CV733964.1|CV733964 FLO--09-B24.b1 Rice flower lambda ph... 50 0.003
dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic ... 50 0.003
gb|AACV01007459.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01008921.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01020697.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|NM_194623.1| Oryza sativa (japonica cultivar-group) put... 50 0.003
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 50 0.003
ref|XM_474786.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromoso... 50 0.003
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|C71958.1|C71958 C71958 Rice panicle at flowering stage O... 48 0.013
gb|C73022.1|C73022 C73022 Rice panicle at flowering stage O... 48 0.013
gb|AU101176.1|AU101176 AU101176 Rice panicle at flowering s... 48 0.013
dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK107070.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F2... 48 0.013
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
ref|NM_197360.1| Oryza sativa (japonica cultivar-group) hyp... 48 0.013
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 48 0.013
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 48 0.013
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
gb|C72759.1|C72759 C72759 Rice panicle at flowering stage O... 46 0.053
gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering s... 46 0.053
gb|CB656848.1|CB656848 OSJNEc11K06.f OSJNEc Oryza sativa (j... 46 0.053
dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chro... 46 0.053
dbj|AK069500.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.053
emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC O... 46 0.053
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
dbj|AP005636.2| Oryza sativa (japonica cultivar-group) geno... 46 0.053
gb|AC104708.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 46 0.053
dbj|AP004994.2| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP004862.3| Oryza sativa (japonica cultivar-group) geno... 46 0.053
gb|AACV01012132.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01019982.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01019984.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01023315.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01024979.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 46 0.053
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
dbj|AK109132.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
ref|NT_107207.1| Oryza sativa (japonica cultivar-group) 44 0.21
gb|AC134342.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|AACV01012991.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
dbj|AP003526.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP004234.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 44 0.21
>gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013578, whole
genome shotgun sequence
Length = 754
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 695 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 737
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 208 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 267
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 268 gccgcgccatggccgccgccgacgtc 293
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0063H02
Length = 152326
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 41882 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 41924
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 41397 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 41456
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 41457 gccgcgccatggccgccgccgacgtc 41482
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 749 catgaggaagcggctgtccgcggccatg 776
||||| ||||||||||||||||||||||
Sbjct: 41540 catgacgaagcggctgtccgcggccatg 41567
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0456E06
Length = 164353
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 135489 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 135531
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 135004 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 135063
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 135064 gccgcgccatggccgccgccgacgtc 135089
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 749 catgaggaagcggctgtccgcggccatg 776
||||| ||||||||||||||||||||||
Sbjct: 135147 catgacgaagcggctgtccgcggccatg 135174
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 1194736 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 1194778
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 1194249 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 1194308
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 1194309 gccgcgccatggccgccgccgacgtc 1194334
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 9802388 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 9802430
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 9801901 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 9801960
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 9801961 gccgcgccatggccgccgccgacgtc 9801986
Score = 46.1 bits (23), Expect = 0.053
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1100 gacggtgagcacgcgcatgaggcggcgaagg 1130
|||||||||||||||||||| |||||||||
Sbjct: 7297452 gacggtgagcacgcgcatgatccggcgaagg 7297482
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 648 gcggcggcgatggtggcggcgg 669
||||||||||||||||||||||
Sbjct: 1861586 gcggcggcgatggtggcggcgg 1861607
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 9e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcgaagg 1130
||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 9845247 gaagatgccggagacggtgagcacgcgcatgaggcgccgaagg 9845289
Score = 60.0 bits (30), Expect = 4e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 609 tgcgggaggtcaagcacgctgcacttgaggtgggggaaggcggcggcgatggtggcggcg 668
||||||||||| |||||||||||||||| |||||||| || ||||||| || || |||
Sbjct: 9844762 tgcgggaggtccagcacgctgcacttgacatgggggaacgccgcggcgacggccgccgcg 9844821
Query: 669 gcgccaccatggccaccaccgacgtc 694
|| | |||||||| || ||||||||
Sbjct: 9844822 gccgcgccatggccgccgccgacgtc 9844847
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 749 catgaggaagcggctgtccgcggccatg 776
||||| ||||||||||||||||||||||
Sbjct: 9844905 catgacgaagcggctgtccgcggccatg 9844932
Score = 46.1 bits (23), Expect = 0.053
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1100 gacggtgagcacgcgcatgaggcggcgaagg 1130
|||||||||||||||||||| |||||||||
Sbjct: 7318122 gacggtgagcacgcgcatgatccggcgaagg 7318152
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 648 gcggcggcgatggtggcggcgg 669
||||||||||||||||||||||
Sbjct: 1921559 gcggcggcgatggtggcggcgg 1921580
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 26340 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 26395
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 62384 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 62422
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 31195 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 31233
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 61734 cttgaggaagacagcgtttgccggtggaacactctcaaacat 61775
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 31088 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 31126
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 26186 cttcttccactcttgctcgtctcgctc 26212
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 1371169 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 1371114
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1366314 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 1366276
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1335125 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 1335087
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1112056 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 1112094
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1076285 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 1076323
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 1076181 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 1076219
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 1335775 cttgaggaagacagcgtttgccggtggaacactctcaaacat 1335734
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 1371323 cttcttccactcttgctcgtctcgctc 1371297
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 1366421 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 1366383
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 1111968 gtgagcacgcgcatgaggcggcg 1111990
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 1110553 ttcaaggatagacctcgatgat 1110574
>gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024717, whole
genome shotgun sequence
Length = 13077
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 11500 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 11555
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 11346 cttcttccactcttgctcgtctcgctc 11372
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 514872 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 514817
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 509366 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 509328
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 276534 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 276572
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 240199 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 240237
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 240095 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 240133
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 91241 cttgaggaagacagcgtttgccggtggaacactctcaaacat 91200
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 515026 cttcttccactcttgctcgtctcgctc 515000
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 509473 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 509435
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 276446 gtgagcacgcgcatgaggcggcg 276468
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 275027 ttcaaggatagacctcgatgat 275048
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 12547931 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 12547876
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 12542425 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 12542387
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 12309593 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 12309631
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 12273258 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 12273296
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 12273154 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 12273192
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 12124300 cttgaggaagacagcgtttgccggtggaacactctcaaacat 12124259
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 650 ggcggcgatggtggcggcggcgc 672
|||||||||||||||||||||||
Sbjct: 15550478 ggcggcgatggtggcggcggcgc 15550500
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 12548085 cttcttccactcttgctcgtctcgctc 12548059
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 12542532 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 12542494
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 12309505 gtgagcacgcgcatgaggcggcg 12309527
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 12308086 ttcaaggatagacctcgatgat 12308107
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 15055507 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 15055452
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 15050652 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 15050614
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 15019463 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 15019425
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 14796394 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 14796432
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 14760623 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 14760661
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 14760519 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 14760557
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 15020113 cttgaggaagacagcgtttgccggtggaacactctcaaacat 15020072
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 650 ggcggcgatggtggcggcggcgc 672
|||||||||||||||||||||||
Sbjct: 18893118 ggcggcgatggtggcggcggcgc 18893140
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 15055661 cttcttccactcttgctcgtctcgctc 15055635
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 15050759 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 15050721
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 14796306 gtgagcacgcgcatgaggcggcg 14796328
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 14794891 ttcaaggatagacctcgatgat 14794912
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 450 atggcttgcttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatg 505
||||||| |||||| ||||| | |||||||||||| ||||| || |||||||||||
Sbjct: 15009790 atggctttcttgcagttctttagtatcttgacacattcatcatcgccccagtcatg 15009735
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 15004935 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 15004897
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 14973746 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 14973708
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 14750677 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 14750715
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 14714906 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 14714944
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 14714802 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 14714840
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 14974396 cttgaggaagacagcgtttgccggtggaacactctcaaacat 14974355
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 650 ggcggcgatggtggcggcggcgc 672
|||||||||||||||||||||||
Sbjct: 18819345 ggcggcgatggtggcggcggcgc 18819367
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 296 cttcttccactcttgctcgtcacgctc 322
||||||||||||||||||||| |||||
Sbjct: 15009944 cttcttccactcttgctcgtctcgctc 15009918
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 15005042 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 15005004
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 14750589 gtgagcacgcgcatgaggcggcg 14750611
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 14749174 ttcaaggatagacctcgatgat 14749195
>gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E60846_3A,
mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 173 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 135
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 261 gtgagcacgcgcatgaggcggcg 239
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146519
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 123492 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 123454
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 123580 gtgagcacgcgcatgaggcggcg 123558
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 124995 ttcaaggatagacctcgatgat 124974
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 133207
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 58281 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 58243
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 58177 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 58139
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 22406 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 22368
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 22494 gtgagcacgcgcatgaggcggcg 22472
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 23909 ttcaaggatagacctcgatgat 23888
>gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024695, whole
genome shotgun sequence
Length = 15878
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 6608 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 6646
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 6504 gaagacgccggtgagggtgagcacgcgcatgaggcggcg 6542
>gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024698, whole
genome shotgun sequence
Length = 20844
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 8682 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 8720
Score = 46.1 bits (23), Expect = 0.053
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1104 gtgagcacgcgcatgaggcggcg 1126
|||||||||||||||||||||||
Sbjct: 8594 gtgagcacgcgcatgaggcggcg 8616
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 ttcaaggatagacctcgatgat 232
||||||||||||||||||||||
Sbjct: 7175 ttcaaggatagacctcgatgat 7196
>gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024715, whole
genome shotgun sequence
Length = 7082
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 4278 cgccgtggtggtggatggcgtcggcgatgccgaggtcca 4240
Score = 46.1 bits (23), Expect = 0.053
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||| |||| ||||||||||||||| ||||||||
Sbjct: 4385 gaagacgccggtgagggtgagcacgcgcatcaggcggcg 4347
>gb|C26012.1|C26012 C26012 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11475_1A, mRNA sequence
Length = 355
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 237 gggggaaggcggcggcgatggcggcggcgg 266
>dbj|AK059902.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G08, full
insert sequence
Length = 1123
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 177 gggggaaggcggcggcgatggcggcggcgg 206
>dbj|AK102619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099G24, full
insert sequence
Length = 1048
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 103 gggggaaggcggcggcgatggcggcggcgg 132
>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0639B07
Length = 138780
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 115340 gggggaaggcggcggcgatggcggcggcgg 115369
>gb|AACV01015571.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015571, whole
genome shotgun sequence
Length = 66088
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 29768 gggggaaggcggcggcgatggcggcggcgg 29797
>gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024681, whole
genome shotgun sequence
Length = 21233
Score = 52.0 bits (26), Expect = 9e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 515 cttgaggaaaacagcggttgcaggtggaatactctcaaacat 556
||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 17287 cttgaggaagacagcgtttgccggtggaacactctcaaacat 17328
>ref|NM_186842.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1048
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 103 gggggaaggcggcggcgatggcggcggcgg 132
>ref|XM_506242.1| PREDICTED Oryza sativa (japonica cultivar-group), P0021G06.107 mRNA
Length = 1123
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 177 gggggaaggcggcggcgatggcggcggcgg 206
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0021G06
Length = 137678
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 25326 gggggaaggcggcggcgatggcggcggcgg 25355
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 8276300 gggggaaggcggcggcgatggcggcggcgg 8276329
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 2159729 gggggaaggcggcggcgatggcggcggcgg 2159758
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 8213354 gggggaaggcggcggcgatggcggcggcgg 8213383
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 52.0 bits (26), Expect = 9e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 640 gggggaaggcggcggcgatggtggcggcgg 669
||||||||||||||||||||| ||||||||
Sbjct: 8320228 gggggaaggcggcggcgatggcggcggcgg 8320257
>gb|C72577.1|C72577 C72577 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1859_1A, mRNA sequence
Length = 330
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 273 atgccagtgacggtgagcacgcgcatgag 245
>gb|C73031.1|C73031 C73031 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2772_1A, mRNA sequence
Length = 462
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 272 atgccagtgacggtgagcacgcgcatgag 244
>gb|BP432958.1|BP432958 BP432958 Oryza sativa (japonica cultivar-group) whole plant seedling
Oryza sativa (japonica cultivar-group) cDNA clone
JRC0462, mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 218 atgccagtgacggtgagcacgcgcatgag 190
>gb|CF326191.1|CF326191 JMT1--05-F19.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-F19, mRNA sequence
Length = 541
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 266 atgccagtgacggtgagcacgcgcatgag 238
>gb|CV733964.1|CV733964 FLO--09-B24.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-B24,
mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 338 atgccagtgacggtgagcacgcgcatgag 310
>dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K03, full
insert sequence
Length = 1483
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 299 atgccagtgacggtgagcacgcgcatgag 271
>dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M18, full
insert sequence
Length = 3082
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 641 ggggaaggcggcggcgatggtggcggcgg 669
||||| |||||||||||||||||||||||
Sbjct: 342 ggggatggcggcggcgatggtggcggcgg 370
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 1143196 atgccagtgacggtgagcacgcgcatgag 1143224
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence
Length = 175704
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 641 ggggaaggcggcggcgatggtggcggcgg 669
||||| |||||||||||||||||||||||
Sbjct: 91108 ggggatggcggcggcgatggtggcggcgg 91136
>gb|AACV01007459.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007459, whole
genome shotgun sequence
Length = 2780
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 641 ggggaaggcggcggcgatggtggcggcgg 669
||||| |||||||||||||||||||||||
Sbjct: 1318 ggggatggcggcggcgatggtggcggcgg 1346
>gb|AACV01008921.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008921, whole
genome shotgun sequence
Length = 29490
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 612 gggaggtcaagcacgctgcacttga 636
|||||||||||||||||||||||||
Sbjct: 19360 gggaggtcaagcacgctgcacttga 19384
Score = 46.1 bits (23), Expect = 0.053
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1100 gacggtgagcacgcgcatgaggcggcgaagg 1130
||||| ||||||||||||||| |||||||||
Sbjct: 19794 gacggagagcacgcgcatgagccggcgaagg 19824
>gb|AACV01020697.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020697, whole
genome shotgun sequence
Length = 14016
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 1849 atgccagtgacggtgagcacgcgcatgag 1821
>ref|NM_194623.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase
ZRP4 (OSJNBa0023I19.21), mRNA
Length = 1101
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 263 atgccagtgacggtgagcacgcgcatgag 235
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 1148335 atgccagtgacggtgagcacgcgcatgag 1148363
>ref|XM_474786.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 936
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 612 gggaggtcaagcacgctgcacttga 636
|||||||||||||||||||||||||
Sbjct: 674 gggaggtcaagcacgctgcacttga 650
Score = 46.1 bits (23), Expect = 0.053
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcgaagg 1130
||||| ||||||||||||||| |||||||||
Sbjct: 240 gacggagagcacgcgcatgagccggcgaagg 210
>ref|NT_079918.2| Oryza sativa (japonica cultivar-group)
Length = 553008
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 641 ggggaaggcggcggcgatggtggcggcgg 669
||||| |||||||||||||||||||||||
Sbjct: 461901 ggggatggcggcggcgatggtggcggcgg 461873
>ref|NT_107203.1| Oryza sativa (japonica cultivar-group)
Length = 2359875
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 612 gggaggtcaagcacgctgcacttga 636
|||||||||||||||||||||||||
Sbjct: 1230857 gggaggtcaagcacgctgcacttga 1230833
Score = 46.1 bits (23), Expect = 0.053
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcgaagg 1130
||||| ||||||||||||||| |||||||||
Sbjct: 1230423 gacggagagcacgcgcatgagccggcgaagg 1230393
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1092 atgcccgtgacggtgagcacgcgcatgag 1120
||||| |||||||||||||||||||||||
Sbjct: 1273325 atgccagtgacggtgagcacgcgcatgag 1273353
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,604,565
Number of Sequences: 438736
Number of extensions: 2604565
Number of successful extensions: 35464
Number of sequences better than 0.5: 115
Number of HSP's better than 0.5 without gapping: 125
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32304
Number of HSP's gapped (non-prelim): 3159
length of query: 1432
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1411
effective length of database: 2,791,206,460
effective search space: 3938392315060
effective search space used: 3938392315060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)