BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC119796.2| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) c... 218 3e-054
ref|XM_470201.1| Oryza sativa (japonica cultivar-group), p... 218 3e-054
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 218 3e-054
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 218 3e-054
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
dbj|AK103041.1| Oryza sativa (japonica cultivar-group) cDNA... 210 6e-052
gb|D24609.1|D24609 RICR2247A Rice root Oryza sativa (japoni... 182 1e-043
gb|AU100969.2|AU100969 AU100969 Rice callus Oryza sativa (j... 178 2e-042
gb|AU161330.1|AU161330 AU161330 Rice callus Oryza sativa (j... 172 1e-040
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
complete sequence
Length = 106057
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 43238 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 43179
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 43178 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 43119
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 43118 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 43059
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 43058 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 42999
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 42998 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 42939
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 42938 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 42879
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 42878 agcctgtcctcaatgctgacatttcc 42853
>gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005867, whole
genome shotgun sequence
Length = 94934
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 8666 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 8607
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 8606 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 8547
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 8546 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 8487
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 8486 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 8427
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 8426 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 8367
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 8366 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 8307
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 8306 agcctgtcctcaatgctgacatttcc 8281
>ref|XM_470201.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1767
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 1757 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 1698
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 1697 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 1638
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 1637 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 1578
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 1577 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 1518
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 1517 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 1458
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 1457 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 1398
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 1397 agcctgtcctcaatgctgacatttcc 1372
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 883317 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 883258
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 883257 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 883198
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 883197 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 883138
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 883137 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 883078
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 883077 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 883018
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 883017 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 882958
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 882957 agcctgtcctcaatgctgacatttcc 882932
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 2482810 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 2482751
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 2482750 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 2482691
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 2482690 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 2482631
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 2482630 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 2482571
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 2482570 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 2482511
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 2482510 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 2482451
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 2482450 agcctgtcctcaatgctgacatttcc 2482425
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 2675172 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 2675113
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 2675112 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 2675053
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 2675052 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 2674993
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 2674992 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 2674933
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 2674932 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 2674873
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 2674872 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 2674813
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 2674812 agcctgtcctcaatgctgacatttcc 2674787
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 2470852 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 2470793
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 2470792 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 2470733
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 2470732 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 2470673
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 2470672 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 2470613
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 2470612 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 2470553
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 2470552 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 2470493
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 2470492 agcctgtcctcaatgctgacatttcc 2470467
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 218 bits (110), Expect = 3e-054
Identities = 317/386 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 2470742 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 2470683
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 2470682 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 2470623
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 2470622 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 2470563
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 2470562 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 2470503
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 2470502 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 2470443
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | |||||||| |||||| || ||||| ||
Sbjct: 2470442 gggatgagactaatgacctcttccctcatcttcttgaccatatctggatggatactttta 2470383
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 2470382 agcctgtcctcaatgctgacatttcc 2470357
>dbj|AK103041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F03, full
insert sequence
Length = 2562
Score = 210 bits (106), Expect = 6e-052
Identities = 316/386 (81%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 2147 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 2088
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 2087 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 2028
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 2027 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 1968
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 1967 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 1908
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 1907 acatcgaatgcatccttcagggtctccagctttgaccttggatcagcatatatcaccctt 1848
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgaccacatctgggtgaatactcttt 578
|| || ||| | |||||||| || ||||| | | |||||| |||||| || ||||| ||
Sbjct: 1847 gggatgagactaatgacctcttccctcatcttcctgaccatatctggatggatactttta 1788
Query: 579 agcctctcctcaatgctggcatttcc 604
||||| |||||||||||| |||||||
Sbjct: 1787 agcctgtcctcaatgctgacatttcc 1762
>gb|D24609.1|D24609 RICR2247A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2247_1A, mRNA sequence
Length = 306
Score = 182 bits (92), Expect = 1e-043
Identities = 203/240 (84%)
Strand = Plus / Minus
Query: 365 ccagctattctcttcgataaaatctttgtcttcttggcctgcgatgatatctcttctcaa 424
||||||||||||||| | ||||||||| ||||| || || |||||||||||||||||||
Sbjct: 306 ccagctattctcttcaacaaaatctttatcttcatgatcttcgatgatatctcttctcaa 247
Query: 425 ctttgtcactttgttaatgatcgcctctatggaaacatcaaatgcatctttcaatgtctc 484
|| |||||| |||||||| || ||||||| |||||||| |||||||| |||| |||||
Sbjct: 246 ctgtgtcaccttgttaattattgcctctacagaaacatcgaatgcatccttcagggtctc 187
Query: 485 cagtttcgatcttggatcggcatatatcacctttggtatcagattgatgacctcctctct 544
||| || || |||||||| |||||||||||| |||| || ||| | |||||||| || ||
Sbjct: 186 cagctttgaccttggatcagcatatatcacccttgggatgagactaatgacctcttccct 127
Query: 545 catttgcttgaccacatctgggtgaatactctttagcctctcctcaatgctggcatttcc 604
||| | |||||||| |||||| || ||||| || ||||| |||||||||||| |||||||
Sbjct: 126 catcttcttgaccatatctggatggatacttttaagcctgtcctcaatgctgacatttcc 67
>gb|AU100969.2|AU100969 AU100969 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61660, mRNA sequence
Length = 701
Score = 178 bits (90), Expect = 2e-042
Identities = 244/296 (82%)
Strand = Plus / Minus
Query: 271 tagaatctccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaa 330
||||||||||||| || || || ||||| |||||||| || ||||||| ||||| ||||
Sbjct: 308 tagaatctccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaa 249
Query: 331 ttgcctgctgtccatcgtctaacagactatacttccagctattctcttcgataaaatctt 390
||| | ||| || || || |||||| ||||||||||||||||||||| | ||||||||
Sbjct: 248 ttgtcctctgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctt 189
Query: 391 tgtcttcttggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcct 450
| ||||| || || ||||||||||||||||||||| |||||| ||| |||| || ||||
Sbjct: 188 tatcttcatgatcttcgatgatatctcttctcaactgtgtcaccttgntaattattgcct 129
Query: 451 ctatggaaacatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatata 510
||| |||||||| |||||||| |||| |||||||| || || |||||||| |||||||
Sbjct: 128 ctacagaaacatcgaatgcatccttcanggtctccagctttgaccttggatcagcatata 69
Query: 511 tcacctttggtatcagattgatgacctcctctctcatttgcttgaccacatctggg 566
||||| |||| || ||| | |||||||| | ||||| | |||||||| |||||||
Sbjct: 68 tcacccttgggatgagactaatgacctctttcctcatcttcttgaccatatctggg 13
>gb|AU161330.1|AU161330 AU161330 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61654, mRNA sequence
Length = 701
Score = 172 bits (87), Expect = 1e-040
Identities = 248/302 (82%)
Strand = Plus / Minus
Query: 219 cctctctgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatct 278
||||| ||||| ||||||| || ||||||||||| | | ||||| | | ||||||||
Sbjct: 360 cctctttgttcgtttttccaggagttcttggcagcattagtagatggattagtagaatct 301
Query: 279 ccacctttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgc 338
||||| || || || ||||| |||||||| || ||||||| ||||| ||||||| | |
Sbjct: 300 ccacccttgtccttgggcttagagaagaacgggtcccattcatgaggcccaattgtcctc 241
Query: 339 tgtccatcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttct 398
|| || || || |||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct: 240 tgcccttcttccaacagatcatacttccagctattctcttcaacaaaatctttatcttca 181
Query: 399 tggcctgcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaa 458
|| || ||||||||||||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 180 tgatcttcgatgatatctcttctcaactgtgtcaccttgttaattattgcctctacagaa 121
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
||||| |||||||| |||| |||||||| || || |||||||| |||||||||||| ||
Sbjct: 120 acatcgaatgcatccttcanggtctccagctttgaccttggatcagcatatatcaccctt 61
Query: 519 gg 520
||
Sbjct: 60 gg 59
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 999,851
Number of Sequences: 438736
Number of extensions: 999851
Number of successful extensions: 19698
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19463
Number of HSP's gapped (non-prelim): 235
length of query: 605
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 584
effective length of database: 2,791,206,460
effective search space: 1630064572640
effective search space used: 1630064572640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)