BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA... 515 e-143
gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (j... 496 e-137
gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germinati... 494 e-137
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 402 e-109
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 402 e-109
dbj|AP003568.3| Oryza sativa (japonica cultivar-group) geno... 402 e-109
gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) c... 402 e-109
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 402 e-109
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 402 e-109
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 402 e-109
gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germinati... 305 5e-080
gb|CB641944.1|CB641944 OSJNEb01N18.f OSJNEb Oryza sativa (j... 283 2e-073
dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA... 281 7e-073
dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA... 281 7e-073
dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA... 281 7e-073
dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA... 281 7e-073
ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA 281 7e-073
ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-... 281 7e-073
ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-... 281 7e-073
gb|CA755589.1|CA755589 BR030024000_PLATE_B12_90_096.ab1 OA ... 228 8e-057
gb|CB638900.1|CB638900 OSJNEa07N02.r OSJNEa Oryza sativa (j... 212 5e-052
gb|CB641943.1|CB641943 OSJNEb01N17.r OSJNEb Oryza sativa (j... 206 3e-050
gb|CB645119.1|CB645119 OSJNEb06K03.r OSJNEb Oryza sativa (j... 204 1e-049
gb|CB669304.1|CB669304 OSJNEe01K24.r OSJNEe Oryza sativa (j... 188 7e-045
gb|CB649252.1|CB649252 OSJNEb13B09.r OSJNEb Oryza sativa (j... 186 3e-044
gb|CB683436.1|CB683436 OSJNEf11M21.r OSJNEf Oryza sativa (j... 159 7e-036
gb|CB683879.1|CB683879 OSJNEf12N22.f OSJNEf Oryza sativa (j... 159 7e-036
dbj|AP004066.2| Oryza sativa (japonica cultivar-group) geno... 143 4e-031
gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) c... 143 4e-031
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 143 4e-031
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 143 4e-031
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 143 4e-031
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 143 4e-031
gb|AQ689876.1|AQ689876 nbxb0080D20f CUGI Rice BAC Library O... 141 2e-030
gb|AZ046238.1|AZ046238 nbeb0091B05r CUGI Rice BAC Library (... 141 2e-030
gb|CA999246.1|CA999246 S234P_C03 Rice cold stress germinati... 68 2e-008
gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (j... 68 2e-008
dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA... 68 2e-008
dbj|AP004041.2| Oryza sativa (japonica cultivar-group) geno... 68 2e-008
gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) c... 68 2e-008
dbj|BA000044.2| Oryza sativa (japonica cultivar-group) geno... 68 2e-008
ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-008
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 68 2e-008
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 68 2e-008
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 68 2e-008
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 68 2e-008
gb|AY360393.2| Oryza sativa (japonica cultivar-group) chrom... 68 2e-008
gb|AQ843521.1|AQ843521 nbxb0020K24f CUGI Rice BAC Library O... 66 7e-008
gb|AQ274149.1|AQ274149 nbxb0032F12f CUGI Rice BAC Library O... 58 2e-005
gb|CB666200.1|CB666200 OSJNEd13A02.f OSJNEd Oryza sativa (j... 56 7e-005
gb|CF309892.1|CF309892 ABF--04-E11.b1 ABF3-overexpressing t... 56 7e-005
>dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111F20, full
insert sequence
Length = 1067
Score = 515 bits (260), Expect = e-143
Identities = 467/536 (87%)
Strand = Plus / Minus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 536 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 477
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 476 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 417
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 416 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 357
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 356 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 297
Query: 867 agcgaatagacaaataccttagagcctgagatcgcgatgcatgcattggaattacagata 926
|||||| ||| || ||||||||||||| ||| || ||||| || ||||||||||||||||
Sbjct: 296 agcgaacagataagtaccttagagccttagaccgtgatgcgtggattggaattacagata 237
Query: 927 gcctggtggcgccatggttatacagagcatgacaacgcagtgactggattctcatcaact 986
| ||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 236 gtctggtagcaccatggttatacagagcgtgacaacggagtgactgaattctcatcaact 177
Query: 987 tttgcagctccttcaaaggaggcaaatgatttggattaaccactctaaatgcaagacaat 1046
||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||| |
Sbjct: 176 tttgcagctcctttaaaggaggtaaatgatttggattgaccactttaaatgcaagacagt 117
Query: 1047 atgttgaagagtgttccgaatcttcaaagatgacttgcttttcagttctcccccttcttt 1106
||||||||||||| || | |||||| ||||| ||||| |||||| | ||||| |||||||
Sbjct: 116 atgttgaagagtgctctggatcttcgaagataacttgtttttcaatcctccctcttcttt 57
Query: 1107 ctactactgaagaagcccacttaactaagtacttccttaaaccttctcctccccaa 1162
|||| || |||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 56 ctaccacggaagaagcccacttcactagatatttccttaaaccttctcctccccaa 1
>gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N17 5', mRNA sequence
Length = 814
Score = 496 bits (250), Expect = e-137
Identities = 607/726 (83%)
Strand = Plus / Minus
Query: 733 atggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacc 792
|||||| ||||| |||| ||||||||| |||| |||| |||||| ||||| || |||||
Sbjct: 795 atggattctatttgcagatgtgttgaattcacctttaaggatgaccgtcttatgaagacc 736
Query: 793 tccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttgg 852
|||||||| ||| |||||||| |||||||||||||||||||||| ||||| ||||| |
Sbjct: 735 tccaaacaattcttcgtaatctgaatcaccagtttcaccaacaagaaccaccacattttg 676
Query: 853 caactctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcat 912
|||||||||||||||||||| ||| || ||||||||||||| ||| || ||||| || ||
Sbjct: 675 caactctatgccccagcgaacagataagtaccttagagccttagaccgtgatgcgtggat 616
Query: 913 tggaattacagatagcctggtggcgccatggttatacagagcatgacaacgcagtgactg 972
||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 615 tggaattacagatagtctggtagcaccatggttatacagagcgtgacaacggagtgactg 556
Query: 973 gattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggattaaccactct 1032
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct: 555 aattctcatcaacttttgcagctcctttaaaggaggtaaatgatttggattgaccacttt 496
Query: 1033 aaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgcttttcagt 1092
|||||||||||| |||||||||||||| || | |||||| ||||| ||||| |||||| |
Sbjct: 495 aaatgcaagacagtatgttgaagagtgctctggatcttcgaagataacttgtttttcaat 436
Query: 1093 tctcccccttctttctactactgaagaagcccacttaactaagtacttccttaaaccttc 1152
||||| ||||||||||| || |||||||||||||| |||| || ||||||||||||||
Sbjct: 435 cctccctcttctttctaccacggaagaagcccacttcactagatatttccttaaaccttc 376
Query: 1153 tcctccccaacgatactcaatatgtgatcggtagttatggtccaacgcaaatgtaacacg 1212
|||||||||| ||||||| ||||||||| |||| || | || || ||||||||||||||
Sbjct: 375 tcctccccaatgatactctatatgtgattggtaactacgatctaatgcaaatgtaacacg 316
Query: 1213 ggaattgcttggcacatcactagactgtaatggataatatatatcgctcccactattgca 1272
||| |||||||| ||||| || | | |||||||| | ||| || |||||||||||
Sbjct: 315 ggagttgcttggtgtatcaccagtacatgaaggataatacaaatcacttccactattgca 256
Query: 1273 tataaaggcatcaaagtcagtcgggagcatgcctgtgcgtactattacagactgtagctc 1332
||| || ||||| || ||||| || |||||||| | | || || ||| |||| |||
Sbjct: 255 tatgaaagcatcgaaatcagtaggaagcatgccagcagacattaatagagaatgtatctc 196
Query: 1333 tgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagtgcg 1392
|||||||||| ||||| |||| |||||||||||| || ||||||| | || | | ||
Sbjct: 195 ccctattgtcagggaagttgacaacacaaaacctgtcgatcctgacaaattttctttacg 136
Query: 1393 tgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtctac 1452
|| |||||| | ||| ||||||| ||| |||| | ||||||||| | ||||| |||||
Sbjct: 135 tgcagcctcgatagaatttctgacaatgcgaatcagatcttccttactgacagaatctac 76
Query: 1453 agcaat 1458
||||||
Sbjct: 75 agcaat 70
>gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 599
Score = 494 bits (249), Expect = e-137
Identities = 492/573 (85%)
Strand = Plus / Minus
Query: 733 atggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacc 792
|||||| ||||| |||| ||||||||| ||||||||| |||||| ||||| || |||||
Sbjct: 596 atggattctatttgcagatgtgttgaattcacccttaaggatgaccgtcttatgaagacc 537
Query: 793 tccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttgg 852
|||||||| ||| |||||||| |||||||||||||||||||||| ||||| ||||| |
Sbjct: 536 tccaaacaattcttcgtaatctgaatcaccagtttcaccaacaagaaccaccacattttg 477
Query: 853 caactctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcat 912
|||||||||||||||||||| ||| || ||||||||||||| ||| || ||||| || ||
Sbjct: 476 caactctatgccccagcgaacagataagtaccttagagccttagaccgtgatgcgtggat 417
Query: 913 tggaattacagatagcctggtggcgccatggttatacagagcatgacaacgcagtgactg 972
||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 416 tggaattacagatagtctggtagcaccatggttatacagagcgtgacaacggagtgactg 357
Query: 973 gattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggattaaccactct 1032
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct: 356 aattctcatcaacttttgcagctcctttaaaggaggtaaatgatttggattgaccacttt 297
Query: 1033 aaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgcttttcagt 1092
|||||||||||| |||||||||||||| || | |||||| ||||| ||||| |||||| |
Sbjct: 296 aaatgcaagacagtatgttgaagagtgctctggatcttcgaagataacttgtttttcaat 237
Query: 1093 tctcccccttctttctactactgaagaagcccacttaactaagtacttccttaaaccttc 1152
||||| ||||||||||| || |||||||||||||| |||| || ||||||||||||||
Sbjct: 236 cctccctcttctttctaccacggaagaagcccacttcactagatatttccttaaaccttc 177
Query: 1153 tcctccccaacgatactcaatatgtgatcggtagttatggtccaacgcaaatgtaacacg 1212
|||||||||| ||||||| ||||||||| |||| || | || || ||||||||||||||
Sbjct: 176 tcctccccaatgatactctatatgtgattggtaactacgatctaatgcaaatgtaacacg 117
Query: 1213 ggaattgcttggcacatcactagactgtaatggataatatatatcgctcccactattgca 1272
||| |||||||| ||||| || | | |||||||| | ||| || |||||||||||
Sbjct: 116 ggagttgcttggtgtatcaccagtacatgaaggataatacaaatcacttccactattgca 57
Query: 1273 tataaaggcatcaaagtcagtcgggagcatgcc 1305
||| || ||||| || ||||| || ||||||||
Sbjct: 56 tatgaaagcatcgaaatcagtaggaagcatgcc 24
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 3325546 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 3325605
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 3325606 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 3325665
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 3325666 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 3325725
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 3325726 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 3325785
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 3325786 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 3325845
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 3325846 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 3325905
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 3325906 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 3325965
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 3325966 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 3326025
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 3326026 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 3326085
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 3326086 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 3326145
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 3326146 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 3326204
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 3326205 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 3326253
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 3324414 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 3324473
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 3324474 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 3324533
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 3324534 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 3324593
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 3324594 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 3324653
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 3324654 agcgaacagataagtacct 3324672
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 3325248 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 3325307
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 3325308 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 3325367
Query: 1002 aaggagg 1008
|||||||
Sbjct: 3325368 aaggagg 3325374
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 3326373 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 3326431
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 3326515 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 3326566
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 142265 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 142324
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 142325 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 142384
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 142385 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 142444
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 142445 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 142504
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 142505 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 142564
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 142565 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 142624
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 142625 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 142684
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 142685 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 142744
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 142745 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 142804
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 142805 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 142864
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 142865 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 142923
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 142924 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 142972
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 141133 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 141192
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 141193 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 141252
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 141253 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 141312
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 141313 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 141372
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 141373 agcgaacagataagtacct 141391
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 141967 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 142026
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 142027 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 142086
Query: 1002 aaggagg 1008
|||||||
Sbjct: 142087 aaggagg 142093
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 143092 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 143150
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 143234 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 143285
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017B12
Length = 157424
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 15159 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 15218
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 15219 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 15278
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 15279 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 15338
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 15339 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 15398
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 15399 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 15458
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 15459 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 15518
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 15519 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 15578
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 15579 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 15638
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 15639 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 15698
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 15699 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 15758
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 15759 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 15817
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 15818 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 15866
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 14027 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 14086
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 14087 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 14146
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 14147 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 14206
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 14207 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 14266
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 14267 agcgaacagataagtacct 14285
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 14861 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 14920
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 14921 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 14980
Query: 1002 aaggagg 1008
|||||||
Sbjct: 14981 aaggagg 14987
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 15986 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 16044
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 16128 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 16179
>gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014670, whole
genome shotgun sequence
Length = 47074
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 10839 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 10898
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 10899 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 10958
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 10959 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 11018
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 11019 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 11078
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 11079 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 11138
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 11139 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 11198
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 11199 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 11258
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 11259 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 11318
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 11319 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 11378
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 11379 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 11438
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 11439 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 11497
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 11498 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 11546
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 9707 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 9766
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 9767 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 9826
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 9827 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 9886
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 9887 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 9946
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 9947 agcgaacagataagtacct 9965
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 10541 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 10600
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 10601 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 10660
Query: 1002 aaggagg 1008
|||||||
Sbjct: 10661 aaggagg 10667
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 11666 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 11724
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 11808 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 11859
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 7201822 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 7201881
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 7201882 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 7201941
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 7201942 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 7202001
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 7202002 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 7202061
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 7202062 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 7202121
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 7202122 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 7202181
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 7202182 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 7202241
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 7202242 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 7202301
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 7202302 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 7202361
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 7202362 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 7202421
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 7202422 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 7202480
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 7202481 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 7202529
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 7200690 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 7200749
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 7200750 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 7200809
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 7200810 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 7200869
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 7200870 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 7200929
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 7200930 agcgaacagataagtacct 7200948
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 7201524 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 7201583
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 7201584 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 7201643
Query: 1002 aaggagg 1008
|||||||
Sbjct: 7201644 aaggagg 7201650
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 7202649 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 7202707
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 7202791 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 7202842
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 24900559 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 24900618
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 24900619 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 24900678
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 24900679 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 24900738
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 24900739 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 24900798
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 24900799 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 24900858
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 24900859 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 24900918
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 24900919 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 24900978
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 24900979 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 24901038
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 24901039 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 24901098
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 24901099 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 24901158
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 24901159 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 24901217
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 24901218 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 24901266
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 24899427 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 24899486
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 24899487 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 24899546
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 24899547 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 24899606
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 24899607 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 24899666
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 24899667 agcgaacagataagtacct 24899685
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 24900261 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 24900320
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 24900321 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 24900380
Query: 1002 aaggagg 1008
|||||||
Sbjct: 24900381 aaggagg 24900387
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 24901386 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 24901444
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 24901528 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 24901579
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 402 bits (203), Expect = e-109
Identities = 584/709 (82%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 25860061 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 25860120
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 25860121 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 25860180
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatg 1191
|| || |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
Sbjct: 25860181 tagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaactacg 25860240
Query: 1192 gtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataata 1251
|| || ||||||||||||||||| |||||||| ||||| || | | ||||||||
Sbjct: 25860241 atctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataata 25860300
Query: 1252 tatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcg 1311
| ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 25860301 caaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagcaga 25860360
Query: 1312 tactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgtaga 1371
| || || ||| |||| ||| |||||||||| ||||| |||| |||||||||||| ||
Sbjct: 25860361 cattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtcga 25860420
Query: 1372 acctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaatc 1431
||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |||
Sbjct: 25860421 tcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcagatc 25860480
Query: 1432 ttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggcac 1491
|||||| | ||||| ||||||||||| | || | ||||||||| | ||| | ||| |
Sbjct: 25860481 ttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggtgc 25860540
Query: 1492 cttgt---ggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatcct 1548
||| ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||
Sbjct: 25860541 cttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatcct 25860600
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 25860601 tgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttttcagcccatt 25860660
Query: 1609 ttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggcatctgcaa 1668
||||| ||| | ||| |||| || ||||||||||| | |||||||| ||||||||||
Sbjct: 25860661 ctctcggcattttgac-caaagttgtttttcagaaaggagtttatagagtgcatctgcaa 25860719
Query: 1669 ttgcatgctgatcatggggatcaacaaggagaccattttccagaacctg 1717
||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 25860720 ttgcatgctgatcatggggatcaacaaggagaccattgtccagcacctg 25860768
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 25858929 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 25858988
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 25858989 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 25859048
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 25859049 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 25859108
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 25859109 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 25859168
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 25859169 agcgaacagataagtacct 25859187
Score = 157 bits (79), Expect = 3e-035
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||| ||| || ||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 25859763 accttagagccttagaccgtgatgcgtggattggaattacagatagtctggtagcaccat 25859822
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttca 1001
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 25859823 ggttatacagagcgtgacaacggagtgactgaattctcatcaacttttgcagctccttta 25859882
Query: 1002 aaggagg 1008
|||||||
Sbjct: 25859883 aaggagg 25859889
Score = 93.7 bits (47), Expect = 3e-016
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 25860888 aatttcaacaggagctccattttttgttgcaattacaggcaaaccatgcatggcagcct 25860946
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 25861030 cctctatcaaggtgacaccgaactgttcaaagtaaggcacatttacaaaagc 25861081
>gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 592
Score = 305 bits (154), Expect = 5e-080
Identities = 483/592 (81%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 1010 aaatgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatct 1069
|||||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||
Sbjct: 592 aaatgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatct 533
Query: 1070 tcaaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccactta 1129
|| ||||| ||||| |||||| | ||||| ||||||||||| || ||||||||||||||
Sbjct: 532 tcgaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttc 473
Query: 1130 actaagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagtta 1189
|||| || |||||||||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct: 472 actagatatttccttaaaccttctcctccccaatgatactctatatgtgattggtaacta 413
Query: 1190 tggtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataa 1249
| || || ||||||||||||||||| |||||||| ||||| || | | ||||||
Sbjct: 412 cgatctaatgcaaatgtaacacgggagttgcttggtgtatcaccagtacatgaaggataa 353
Query: 1250 tatatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtg 1309
|| | ||| || |||||||||||||| || ||||| || ||||| || |||||||| |
Sbjct: 352 tacaaatcacttccactattgcatatgaaagcatcgaaatcagtaggaagcatgccagca 293
Query: 1310 cgtactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacctgta 1369
| || || ||| |||| ||| |||||||||| ||||| |||| ||||||||||||
Sbjct: 292 gacattaatagagaatgtatctcccctattgtcagggaagttgacaacacaaaacctgtc 233
Query: 1370 gaacctgacatagttccagtgcgtgtagcctcaacagagtttctgataatttgaattaaa 1429
|| ||||||| | || | | |||| |||||| | ||| ||||||| ||| |||| | |
Sbjct: 232 gatcctgacaaattttctttacgtgcagcctcgatagaatttctgacaatgcgaatcaga 173
Query: 1430 tcttcctttttaacagagtctacagcaatgatagatatatgcttcctgcacttcacaggc 1489
|||||||| | ||||| ||||||||||| | || | ||||||||| | ||| | |||
Sbjct: 172 tcttccttactgacagaatctacagcaataacagtgacatgcttccttcccttaataggt 113
Query: 1490 acct---tgtggtcttctttgcatgcgaaagcaggatgtcttggaccaagacttgatatc 1546
||| | ||||||| |||| ||| ||||||||||| ||||| |||||| ||||||||
Sbjct: 112 gccttaatccggtcttcattgcttgcaaaagcaggatgccttgggccaagagttgatatc 53
Query: 1547 cttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttt 1598
|||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 52 cttgacaagtaattcttgcaatgttcaggccaagaaaactgatgtatatttt 1
>gb|CB641944.1|CB641944 OSJNEb01N18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N18 5', mRNA sequence
Length = 665
Score = 283 bits (143), Expect = 2e-073
Identities = 308/363 (84%)
Strand = Plus / Minus
Query: 862 gccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattggaattac 921
||||||||||| ||| || | ||||||||||| ||| || ||||| || |||||||||||
Sbjct: 665 gccccagcgaacagataagtgccttagagccttagaccgtgatgcgtggattggaattac 606
Query: 922 agatagcctggtggcgccatggttatacagagcatgacaacgcagtgactggattctcat 981
|||||| |||| || ||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 605 agatagtatggtagcaccatggttatacagagcgtgacaacggagtgactgaattctcat 546
Query: 982 caacttttgcagctccttcaaaggaggcaaatgatttggattaaccactctaaatgcaag 1041
|||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||
Sbjct: 545 caacttttgcagctcctttaaaggaggtaaatgatttggattgaccactttaaatgcaag 486
Query: 1042 acaatatgttgaagagtgttccgaatcttcaaagatgacttgcttttcagttctccccct 1101
||| |||||||||||||| | | ||||| ||||| ||||| |||||| | ||||| |
Sbjct: 485 acagtatgttgaagagtgctgtggatcttagaagataacttgtttttcaatcctccctgt 426
Query: 1102 tctttctactactgaagaagcccacttaactaagtacttccttaaaccttctcctcccca 1161
| ||| ||| || |||||||||||||| |||| || ||| |||||| ||||||||||||
Sbjct: 425 tatttgtaccacggaagaagcccacttcactagatatttcgttaaacgttctcctcccca 366
Query: 1162 acgatactcaatatgtgatcggtagttatggtccaacgcaaatgtaacacgggaattgct 1221
| ||| || ||||||||| |||| || | || || ||||||||||||||||| |||||
Sbjct: 365 atgattctgtatatgtgattggtaactacgatctaatgcaaatgtaacacgggagttgct 306
Query: 1222 tgg 1224
|||
Sbjct: 305 tgg 303
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1335 ctattgtcagtgaagtagacagcacaaaacctgtagaacctgaca 1379
|||||||||| ||||| |||| |||||||||||| || |||||||
Sbjct: 192 ctattgtcagggaagttgacaacacaaaacctgtcgatcctgaca 148
>dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D12, full
insert sequence
Length = 2711
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 1731 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 1672
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 1671 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 1612
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 1611 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 1552
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 1551 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 1492
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 1491 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 1432
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 1431 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 1372
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 1371 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 1312
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 1311 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 1252
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 1251 aggccttctcctccccatcgatactcaatatgtg 1218
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 854 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 795
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 794 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 736
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 735 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 676
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 675 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 616
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 615 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 569
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 1066 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 1007
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 1006 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 947
Query: 1450 tacag 1454
|||||
Sbjct: 946 tacag 942
>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full
insert sequence
Length = 3326
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2959 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2900
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2899 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2840
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2839 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2780
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2779 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2720
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2719 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2660
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2659 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2600
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2599 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2540
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2539 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2480
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2479 aggccttctcctccccatcgatactcaatatgtg 2446
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 2082 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 2023
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 2022 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1964
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1963 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1904
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1903 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1844
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1843 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1797
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2294 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2235
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2234 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2175
Query: 1450 tacag 1454
|||||
Sbjct: 2174 tacag 2170
>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full
insert sequence
Length = 3259
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2932 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2873
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2872 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2813
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2812 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2753
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2752 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2693
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2692 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2633
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2632 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2573
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2572 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2513
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2512 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2453
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2452 aggccttctcctccccatcgatactcaatatgtg 2419
Score = 244 bits (123), Expect = 1e-061
Identities = 248/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| ||||| || |
Sbjct: 2055 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatattcttta 1996
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 1995 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1937
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1936 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1877
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1876 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1817
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1816 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1770
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2267 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2208
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2207 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2148
Query: 1450 tacag 1454
|||||
Sbjct: 2147 tacag 2143
>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full
insert sequence
Length = 3489
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2993 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2934
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2933 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2874
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2873 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2814
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2813 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2754
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2753 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2694
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2693 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2634
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2633 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2574
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2573 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2514
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2513 aggccttctcctccccatcgatactcaatatgtg 2480
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 2116 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 2057
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 2056 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1998
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1997 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1938
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1937 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1878
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1877 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1831
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2328 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2269
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2268 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2209
Query: 1450 tacag 1454
|||||
Sbjct: 2208 tacag 2204
>ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3259
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2932 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2873
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2872 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2813
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2812 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2753
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2752 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2693
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2692 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2633
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2632 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2573
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2572 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2513
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2512 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2453
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2452 aggccttctcctccccatcgatactcaatatgtg 2419
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 2055 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 1996
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 1995 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1937
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1936 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1877
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1876 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1817
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1816 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1770
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2267 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2208
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2207 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2148
Query: 1450 tacag 1454
|||||
Sbjct: 2147 tacag 2143
>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3490
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2994 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2935
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2934 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2875
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2874 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2815
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2814 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2755
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2754 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2695
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2694 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2635
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2634 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2575
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2574 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2515
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2514 aggccttctcctccccatcgatactcaatatgtg 2481
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 2117 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 2058
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 2057 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1999
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1998 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1939
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1938 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1879
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1878 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1832
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2329 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2270
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2269 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2210
Query: 1450 tacag 1454
|||||
Sbjct: 2209 tacag 2205
>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3327
Score = 281 bits (142), Expect = 7e-073
Identities = 421/514 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 2960 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 2901
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 2900 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2841
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2840 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2781
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 2780 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 2721
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 2720 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 2661
Query: 965 agtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatta 1024
||||| |||||||||||||| || || |||||| ||||| || | ||||||||||||
Sbjct: 2660 agtgattggattctcatcaatttcctcaactcctttaaagggggtagatgatttggattg 2601
Query: 1025 accactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgc 1084
||||||||||||||||||||||| |||||||||||||| | |||||||| || | |||
Sbjct: 2600 accactctaaatgcaagacaataggttgaagagtgttcagggtcttcaaaaataatttgt 2541
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| |||
Sbjct: 2540 ctttcgattcttccctttctttctaccactgaagtagcccatttcactagatactttctt 2481
Query: 1145 aaaccttctcctccccaacgatactcaatatgtg 1178
| |||||||||||||| ||||||||||||||||
Sbjct: 2480 aggccttctcctccccatcgatactcaatatgtg 2447
Score = 252 bits (127), Expect = 6e-064
Identities = 249/287 (86%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 2083 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 2024
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 2023 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 1965
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| |||||||||||||||||||| | ||| ||||||| |
Sbjct: 1964 tctgcaatggcattctgatcatgtggatcaacaaggagaccattgttcagcacctgatta 1905
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
||||| |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 1904 atttctacaggagctccattttttgttgcaataataggcaaaccattcatagcagcctct 1845
Query: 1782 atcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 1844 attagggtaacaccaaattgttcaaaataagccacattcacaaaagc 1798
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 2295 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 2236
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 2235 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 2176
Query: 1450 tacag 1454
|||||
Sbjct: 2175 tacag 2171
>gb|CA755589.1|CA755589 BR030024000_PLATE_B12_90_096.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030024000_PLATE_B12_90_096.ab1 similar to
Sucrose-Phosphate Synthase [Saccharum officinarum], mRNA
sequence
Length = 806
Score = 228 bits (115), Expect = 8e-057
Identities = 229/267 (85%)
Strand = Plus / Minus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 273 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 214
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 213 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 154
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 153 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 94
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 93 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 34
Query: 867 agcgaatagacaaataccttagagcct 893
|||||| ||| || |||||||||||||
Sbjct: 33 agcgaacagataagtaccttagagcct 7
>gb|CB638900.1|CB638900 OSJNEa07N02.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07N02 3', mRNA sequence
Length = 571
Score = 212 bits (107), Expect = 5e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 313 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 372
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 373 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 432
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 433 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 492
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 493 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 552
Query: 867 agcgaatagacaaatacct 885
|||||| ||| || |||||
Sbjct: 553 agcgaacagataagtacct 571
>gb|CB641943.1|CB641943 OSJNEb01N17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N17 3', mRNA sequence
Length = 828
Score = 206 bits (104), Expect = 3e-050
Identities = 209/244 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 585 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 644
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 645 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 704
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 705 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 764
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 765 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 824
Query: 867 agcg 870
||||
Sbjct: 825 agcg 828
>gb|CB645119.1|CB645119 OSJNEb06K03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06K03 3', mRNA sequence
Length = 775
Score = 204 bits (103), Expect = 1e-049
Identities = 208/243 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 533 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 592
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 593 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 652
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 653 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 712
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctatgcccc 866
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 713 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctatgcccc 772
Query: 867 agc 869
|||
Sbjct: 773 agc 775
>gb|CB669304.1|CB669304 OSJNEe01K24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01K24 3', mRNA sequence
Length = 860
Score = 188 bits (95), Expect = 7e-045
Identities = 200/235 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 626 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 685
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 686 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 745
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 746 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 805
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactctat 861
||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 806 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactctat 860
>gb|CB649252.1|CB649252 OSJNEb13B09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13B09 3', mRNA sequence
Length = 765
Score = 186 bits (94), Expect = 3e-044
Identities = 199/234 (85%)
Strand = Plus / Plus
Query: 627 gttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttg 686
|||||| || ||||||||| |||||| |||||| | ||||||||||||||||| ||||
Sbjct: 532 gttgtttcagagcagacctcatgtcatcagtgccataaccctcaattccaatgatgtttg 591
Query: 687 agctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcg 746
||||||||| ||||||||||| |||||||| |||| || || | |||||| ||||| |
Sbjct: 592 ggctatcaagtgcaacaacatcttgtaaaggataccgcctaacagaatggattctatttg 651
Query: 747 caggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaacagttcct 806
||| ||||||||| ||||||||| |||||| ||||| || ||||||||||||| ||| |
Sbjct: 652 cagatgtgttgaattcacccttaaggatgaccgtcttatgaagacctccaaacaattctt 711
Query: 807 cgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactcta 860
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 712 cgtaatctgaatcaccagtttcaccaacaagaaccaccacattttgcaactcta 765
>gb|CB683436.1|CB683436 OSJNEf11M21.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11M21 3', mRNA sequence
Length = 793
Score = 159 bits (80), Expect = 7e-036
Identities = 260/320 (81%)
Strand = Plus / Plus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 436 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 495
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 496 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 555
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 556 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 615
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 616 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 675
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 676 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 735
Query: 965 agtgactggattctcatcaa 984
||||| ||||||||||||||
Sbjct: 736 agtgattggattctcatcaa 755
>gb|CB683879.1|CB683879 OSJNEf12N22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf12N22 5', mRNA sequence
Length = 707
Score = 159 bits (80), Expect = 7e-036
Identities = 260/320 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 322 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 263
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 262 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 203
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 202 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 143
Query: 845 gcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgat 904
||||||||| |||||| |||||||| ||| |||| |||||||| ||||| || || |||
Sbjct: 142 acatttggcagctctattccccagcgtatacacaagtaccttagtgcctgggaacgtgat 83
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
|| || || |||| |||||| || |||||||| | |||||||||| |||| |||||
Sbjct: 82 gcgtgaatgggaactacagagagtctggtggcactgtggttatacaaggcattgcaacgg 23
Query: 965 agtgactggattctcatcaa 984
||||| ||||||||||||||
Sbjct: 22 agtgaatggattctcatcaa 3
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1572_F02
Length = 93626
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 86470 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 86411
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 86410 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 86352
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 86351 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 86308
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 87000 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 86941
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 86940 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 86881
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 86880 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 86834
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 87853 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 87794
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 87793 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 87734
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 87733 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 87674
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 87673 acatttggcagctctattccccagcgtatacacaagtacct 87633
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 86208 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 86149
Query: 1773 gcagcct 1779
|||||||
Sbjct: 86148 gcagcct 86142
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 86682 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 86623
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 86622 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 86563
Query: 1450 tacag 1454
|||||
Sbjct: 86562 tacag 86558
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 87249 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 87190
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 87189 ggttatacaaggcattgcaacggagtgattggattctcatcaa 87147
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 86046 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 85995
>gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003496, whole
genome shotgun sequence
Length = 32401
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Plus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 3266 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 3325
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 3326 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 3384
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 3385 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 3428
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 2736 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 2795
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 2796 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 2855
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 2856 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 2902
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Plus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 1883 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 1942
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 1943 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 2002
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 2003 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 2062
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 2063 acatttggcagctctattccccagcgtatacacaagtacct 2103
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 3528 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 3587
Query: 1773 gcagcct 1779
|||||||
Sbjct: 3588 gcagcct 3594
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 3054 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 3113
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 3114 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 3173
Query: 1450 tacag 1454
|||||
Sbjct: 3174 tacag 3178
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 2487 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 2546
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 2547 ggttatacaaggcattgcaacggagtgattggattctcatcaa 2589
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 3690 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 3741
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 86470 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 86411
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 86410 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 86352
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 86351 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 86308
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 87000 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 86941
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 86940 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 86881
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 86880 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 86834
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 87853 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 87794
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 87793 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 87734
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 87733 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 87674
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 87673 acatttggcagctctattccccagcgtatacacaagtacct 87633
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 86208 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 86149
Query: 1773 gcagcct 1779
|||||||
Sbjct: 86148 gcagcct 86142
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 86682 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 86623
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 86622 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 86563
Query: 1450 tacag 1454
|||||
Sbjct: 86562 tacag 86558
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 87249 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 87190
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 87189 ggttatacaaggcattgcaacggagtgattggattctcatcaa 87147
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 86046 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 85995
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 4797677 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 4797618
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 4797617 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 4797559
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 4797558 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 4797515
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 4798207 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 4798148
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 4798147 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 4798088
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 4798087 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 4798041
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 4799060 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 4799001
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 4799000 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 4798941
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 4798940 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 4798881
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 4798880 acatttggcagctctattccccagcgtatacacaagtacct 4798840
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 4797415 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 4797356
Query: 1773 gcagcct 1779
|||||||
Sbjct: 4797355 gcagcct 4797349
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 4797889 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 4797830
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 4797829 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 4797770
Query: 1450 tacag 1454
|||||
Sbjct: 4797769 tacag 4797765
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 4798456 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 4798397
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 4798396 ggttatacaaggcattgcaacggagtgattggattctcatcaa 4798354
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 4797253 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 4797202
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 4797677 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 4797618
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 4797617 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 4797559
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 4797558 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 4797515
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 4798207 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 4798148
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 4798147 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 4798088
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 4798087 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 4798041
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 4799060 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 4799001
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 4799000 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 4798941
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 4798940 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 4798881
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 4798880 acatttggcagctctattccccagcgtatacacaagtacct 4798840
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 4797415 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 4797356
Query: 1773 gcagcct 1779
|||||||
Sbjct: 4797355 gcagcct 4797349
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 4797889 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 4797830
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 4797829 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 4797770
Query: 1450 tacag 1454
|||||
Sbjct: 4797769 tacag 4797765
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 4798456 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 4798397
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 4798396 ggttatacaaggcattgcaacggagtgattggattctcatcaa 4798354
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 4797253 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 4797202
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 143 bits (72), Expect = 4e-031
Identities = 142/164 (86%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct: 4714398 atatccttgacaagtaattcttgcaatgttcaggccatgagaactggtgaatatttttta 4714339
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||| |||| |||||| ||| |||| || || |||||||| | |||||| || |||
Sbjct: 4714338 gcccattctctctacatctcgac-caaagttgtttgtcagaaagaagcttatacagtgca 4714280
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 4714279 tctgcaatggcattctgatcatgtggatcaacaaggagaccatt 4714236
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 4714928 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 4714869
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 4714868 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 4714809
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 4714808 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 4714762
Score = 113 bits (57), Expect = 3e-022
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 665 ccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtacctt 724
|||||||| ||||||||||||||||| || || || || ||||| ||||| || || ||
Sbjct: 4715781 ccctcaatgccaatgatatttgagctgtccagggcgacgacatcttgtaacggatatctc 4715722
Query: 725 ctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttg 784
||||| |||||||| || ||||| || ||||||| | ||||| | |||||| ||| ||
Sbjct: 4715721 ctgacagtatggattctgttcgcggggatgttgaactcgcccttcaggatgacggtcctg 4715662
Query: 785 tggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccaca 844
|||||||| || | |||||| || ||||| ||||| ||| |||||||||||| ||| ||
Sbjct: 4715661 tggagaccacctagcagttcttcataatccgaatcgccactttcaccaacaaggactgca 4715602
Query: 845 gcatttggcaactctatgccccagcgaatagacaaatacct 885
||||||||| |||||| |||||||| ||| |||| |||||
Sbjct: 4715601 acatttggcagctctattccccagcgtatacacaagtacct 4715561
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||| |||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct: 4714136 acctgattaatttctacaggagctccattttttgttgcaataataggcaaaccattcata 4714077
Query: 1773 gcagcct 1779
|||||||
Sbjct: 4714076 gcagcct 4714070
Score = 73.8 bits (37), Expect = 3e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1330 ctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgacatagttccagt 1389
||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || | ||
Sbjct: 4714610 ctctgatattgtaagtgaagttgacagcacaaaaccagttgaaccagacattttttctgt 4714551
Query: 1390 gcgtgtagcctcaacagagtttctgataatttgaattaaatcttcctttttaacagagtc 1449
|||||| | |||| || ||||||||| || | | || ||||||||| |||||||||||
Sbjct: 4714550 gcgtgtgacttcaatagtgtttctgattatccggactagatcttccttgttaacagagtc 4714491
Query: 1450 tacag 1454
|||||
Sbjct: 4714490 tacag 4714486
Score = 54.0 bits (27), Expect = 3e-004
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
||||||| ||||| || || ||||| || || |||| |||||| || |||||||| | |
Sbjct: 4715177 accttagtgcctgggaacgtgatgcgtgaatgggaactacagagagtctggtggcactgt 4715118
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaa 984
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 4715117 ggttatacaaggcattgcaacggagtgattggattctcatcaa 4715075
Score = 48.1 bits (24), Expect = 0.017
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||| | ||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 4713974 cctctattagggtaacaccaaattgttcaaaataagccacattcacaaaagc 4713923
>gb|AQ689876.1|AQ689876 nbxb0080D20f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0080D20f, DNA sequence
Length = 396
Score = 141 bits (71), Expect = 2e-030
Identities = 143/167 (85%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 243 atgatttggattgaccactctaaatgcaagacaataggttgaagagtgttcagggtcttc 184
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | ||| |||| |||| ||| |||||||||| ||||||| |||||| || ||
Sbjct: 183 aaaaataatttgtctttcgattcttccctttctttctaccactgaagtagcccatttcac 124
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtg 1178
|| ||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 123 tagatactttcttaggccttctcctccccatcgatactcaatatgtg 77
>gb|AZ046238.1|AZ046238 nbeb0091B05r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0091B05r, DNA
sequence
Length = 902
Score = 141 bits (71), Expect = 2e-030
Identities = 147/170 (86%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||||||||| |||||| ||||||||||||| |||||||||||||| || | ||||||
Sbjct: 102 atgatttggattgaccactttaaatgcaagacagtatgttgaagagtgctctggatcttc 161
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||||| ||||| |||||| | ||||| ||||||||||| || |||||||||||||| ||
Sbjct: 162 gaagataacttgtttttcaatcctccctcttctttctaccacggaagaagcccacttcac 221
Query: 1132 taagtacttccttaaacc-ttctcctccccaacgatactcaatatgtgat 1180
|| || ||||||||||| |||| || ||||| ||||||| |||||||||
Sbjct: 222 tagatatttccttaaacctttctnct-cccaatgatactctatatgtgat 270
>gb|CA999246.1|CA999246 S234P_C03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 519
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 138 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 79
Query: 1609 tt 1610
||
Sbjct: 78 tt 77
>gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14H08 5', mRNA sequence
Length = 846
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 201 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 142
Query: 1609 tt 1610
||
Sbjct: 141 tt 140
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 834 cttccttaaaccttctccaccccaacggtactcaat 799
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 714 atcgctaccactgttgcatatgaaggcatcaaaatcagt 676
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
insert sequence
Length = 3858
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 2238 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 2179
Query: 1609 tt 1610
||
Sbjct: 2178 tt 2177
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 2871 cttccttaaaccttctccaccccaacggtactcaat 2836
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 2751 atcgctaccactgttgcatatgaaggcatcaaaatcagt 2713
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1115_A07
Length = 165126
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 15589 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 15530
Query: 1609 tt 1610
||
Sbjct: 15529 tt 15528
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 16222 cttccttaaaccttctccaccccaacggtactcaat 16187
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 16102 atcgctaccactgttgcatatgaaggcatcaaaatcagt 16064
>gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017983, whole
genome shotgun sequence
Length = 17582
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 6086 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 6027
Query: 1609 tt 1610
||
Sbjct: 6026 tt 6025
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 6719 cttccttaaaccttctccaccccaacggtactcaat 6684
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 6599 atcgctaccactgttgcatatgaaggcatcaaaatcagt 6561
>dbj|BA000044.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
centromeric region
Length = 1992366
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 463055 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 462996
Query: 1609 tt 1610
||
Sbjct: 462995 tt 462994
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 463688 cttccttaaaccttctccaccccaacggtactcaat 463653
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 463568 atcgctaccactgttgcatatgaaggcatcaaaatcagt 463530
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3201
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 2043 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 1984
Query: 1609 tt 1610
||
Sbjct: 1983 tt 1982
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 2676 cttccttaaaccttctccaccccaacggtactcaat 2641
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 2556 atcgctaccactgttgcatatgaaggcatcaaaatcagt 2518
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 12171876 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 12171817
Query: 1609 tt 1610
||
Sbjct: 12171816 tt 12171815
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 12172509 cttccttaaaccttctccaccccaacggtactcaat 12172474
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 12172389 atcgctaccactgttgcatatgaaggcatcaaaatcagt 12172351
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 4162205 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 4162146
Query: 1609 tt 1610
||
Sbjct: 4162145 tt 4162144
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 4162838 cttccttaaaccttctccaccccaacggtactcaat 4162803
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 4162718 atcgctaccactgttgcatatgaaggcatcaaaatcagt 4162680
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 11764211 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 11764152
Query: 1609 tt 1610
||
Sbjct: 11764151 tt 11764150
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 11764844 cttccttaaaccttctccaccccaacggtactcaat 11764809
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 11764724 atcgctaccactgttgcatatgaaggcatcaaaatcagt 11764686
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 12411560 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 12411501
Query: 1609 tt 1610
||
Sbjct: 12411500 tt 12411499
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 12412193 cttccttaaaccttctccaccccaacggtactcaat 12412158
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 12412073 atcgctaccactgttgcatatgaaggcatcaaaatcagt 12412035
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttcaatccatt 1608
|||||| || || |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 80875 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttcagaccatt 80816
Query: 1609 tt 1610
||
Sbjct: 80815 tt 80814
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 81508 cttccttaaaccttctccaccccaacggtactcaat 81473
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 81388 atcgctaccactgttgcatatgaaggcatcaaaatcagt 81350
>gb|AQ843521.1|AQ843521 nbxb0020K24f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0020K24f, DNA sequence
Length = 388
Score = 65.9 bits (33), Expect = 7e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||| || || |||||||||||||||||||||||||| || ||||||||||
Sbjct: 95 tgacaaatagtttttgcaatgttcaggccaagaaaattgatgaatatttttca 43
>gb|AQ274149.1|AQ274149 nbxb0032F12f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0032F12f, DNA sequence
Length = 585
Score = 58.0 bits (29), Expect = 2e-005
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1549 tgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||| || || ||||||||| |||||||||||||||| || ||||||||||
Sbjct: 94 tgacaaatagtttttgcaatgtacaggccaagaaaattgatgaatatttttca 42
>gb|CB666200.1|CB666200 OSJNEd13A02.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13A02 5', mRNA sequence
Length = 741
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgatactcaat 1173
|||||||||||||||||| |||||||| ||||||||
Sbjct: 327 cttccttaaaccttctccaccccaacggtactcaat 292
Score = 46.1 bits (23), Expect = 0.067
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1255 atcgctcccactattgcatataaaggcatcaaagtcagt 1293
|||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 207 atcgctaccactgttgcatatgaaggcatcaaaatcagt 169
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,985,365
Number of Sequences: 438736
Number of extensions: 2985365
Number of successful extensions: 17875
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17296
Number of HSP's gapped (non-prelim): 537
length of query: 1829
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1807
effective length of database: 2,790,767,724
effective search space: 5042917277268
effective search space used: 5042917277268
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)