BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA... 898 0.0
gb|AC108499.3| Oryza sativa (japonica cultivar-group) chrom... 224 7e-056
gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) c... 224 7e-056
ref|NT_107218.1| Oryza sativa (japonica cultivar-group) 224 7e-056
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 224 7e-056
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 224 7e-056
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 224 7e-056
dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA... 186 1e-044
gb|AU166943.1|AU166943 AU166943 Rice callus (2001) Oryza sa... 133 2e-028
gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature lea... 90 3e-015
gb|AACV01003836.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature lea... 74 1e-010
dbj|AK069386.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
gb|CF312469.1|CF312469 ABF--08-D23.g1 ABF3-overexpressing t... 56 4e-005
gb|C72626.1|C72626 C72626 Rice panicle at flowering stage O... 50 0.002
gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (j... 50 0.002
gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (j... 50 0.002
gb|CF309704.1|CF309704 ABF--03-P22.b1 ABF3-overexpressing t... 50 0.002
gb|CF324134.1|CF324134 HDN--05-L13.g1 OsHDAC1-overexpressin... 50 0.002
dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NM_190765.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003286.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
>dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D01, full
insert sequence
Length = 1170
Score = 898 bits (453), Expect = 0.0
Identities = 609/661 (92%)
Strand = Plus / Minus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 943 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 884
Query: 303 aatttggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaag 362
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 883 aatttggggcatcgacatgccaccagatacaacaatttcgatgccttcacggacagaaag 824
Query: 363 atttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggtt 422
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 823 atttggccttataacatccttcgaatttaccatgaagatatcaccaatataaagatggtt 764
Query: 423 cgttgggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactga 482
||||||||||| |||||||| || || |||||||||| |||||||||||| || |||||
Sbjct: 763 ggttgggacatacacgcagtacagttcctcttgaccagtataactctggagagagactga 704
Query: 483 cgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttc 542
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 703 tgatgtaatgaaaccaaatgcatattctccaatacgaggatgccttatgatgaccacttc 644
Query: 543 cttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcatt 602
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 643 cttgaatgcctgtttgttctgatctggtgatattgcagcacttatttgcttggatgcatt 584
Query: 603 gtagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacaga 662
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 583 gtagatatgacggacaagtggcatgcgcttaataatccactcaccaaggctaaggacaga 524
Query: 663 tgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgac 722
||| |||| |||||||||||| |||||||| | || ||||||||| |||||||| ||||
Sbjct: 523 tgctccaacccaagatgacatgaagactccaaccacaaatatgaaggtaacagaagtgat 464
Query: 723 aaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatc 782
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 463 aaagccaagaccaaacatgttgattcccagttgagcatagattggcgagaagaatccgtc 404
Query: 783 aacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattac 842
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 403 aacaaaatgaatgaaccaccatgtgatgtagaatgttattgctatggggaagagaattac 344
Query: 843 acatccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcctcgcg 902
||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 343 acatccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcctcgcg 284
Query: 903 g 903
|
Sbjct: 283 g 283
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11,
complete sequence
Length = 133352
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 98496 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 98555
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 98556 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 98615
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 98616 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 98664
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 99029 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 99088
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 99089 caccatgtgatgtagaatgttattgctatggggaagagaattacac 99134
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 98011 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 98070
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 98071 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 98130
Query: 461 aataactctg 470
|||||||||
Sbjct: 98131 tataactctg 98140
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 98307 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 98366
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 98367 tatgatgaccacttccttgaatgcctgtttgttctgatctg 98407
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 97801 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 97860
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 97861 aatttggggcatcgacatgccaccagatacaacaatttc 97899
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 99792 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 99846
>gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012610, whole
genome shotgun sequence
Length = 16739
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 11224 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 11283
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 11284 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 11343
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 11344 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 11392
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 11757 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 11816
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11817 caccatgtgatgtagaatgttattgctatggggaagagaattacac 11862
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 10739 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 10798
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 10799 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 10858
Query: 461 aataactctg 470
|||||||||
Sbjct: 10859 tataactctg 10868
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 11035 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 11094
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11095 tatgatgaccacttccttgaatgcctgtttgttctgatctg 11135
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 10529 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 10588
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 10589 aatttggggcatcgacatgccaccagatacaacaatttc 10627
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 12520 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 12574
>ref|NT_107218.1| Oryza sativa (japonica cultivar-group)
Length = 369997
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 98496 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 98555
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 98556 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 98615
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 98616 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 98664
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 99029 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 99088
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 99089 caccatgtgatgtagaatgttattgctatggggaagagaattacac 99134
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 98011 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 98070
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 98071 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 98130
Query: 461 aataactctg 470
|||||||||
Sbjct: 98131 tataactctg 98140
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 98307 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 98366
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 98367 tatgatgaccacttccttgaatgcctgtttgttctgatctg 98407
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 97801 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 97860
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 97861 aatttggggcatcgacatgccaccagatacaacaatttc 97899
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 99792 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 99846
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 8459775 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 8459834
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 8459835 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 8459894
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 8459895 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 8459943
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 8460308 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 8460367
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8460368 caccatgtgatgtagaatgttattgctatggggaagagaattacac 8460413
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 8459290 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 8459349
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 8459350 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 8459409
Query: 461 aataactctg 470
|||||||||
Sbjct: 8459410 tataactctg 8459419
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 8459586 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 8459645
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8459646 tatgatgaccacttccttgaatgcctgtttgttctgatctg 8459686
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 8459080 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 8459139
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 8459140 aatttggggcatcgacatgccaccagatacaacaatttc 8459178
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 8461071 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 8461125
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 25760088 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 25760147
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 25760148 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 25760207
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 25760208 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 25760256
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 25760621 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 25760680
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 25760681 caccatgtgatgtagaatgttattgctatggggaagagaattacac 25760726
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 25759603 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 25759662
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 25759663 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 25759722
Query: 461 aataactctg 470
|||||||||
Sbjct: 25759723 tataactctg 25759732
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 25759899 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 25759958
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 25759959 tatgatgaccacttccttgaatgcctgtttgttctgatctg 25759999
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 25759393 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 25759452
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 25759453 aatttggggcatcgacatgccaccagatacaacaatttc 25759491
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 25761384 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 25761438
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 224 bits (113), Expect = 7e-056
Identities = 155/169 (91%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 26073735 ctggtgatattgcagcacttatttgcttggatgcattgtagatatgacggacaagtggca 26073794
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
Sbjct: 26073795 tgcgcttaataatccactcaccaaggctaaggacagatgctccaacccaagatgacatga 26073854
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagacc 734
||||||| | || ||||||||| |||||||| |||| ||||||||||||
Sbjct: 26073855 agactccaaccacaaatatgaaggtaacagaagtgataaagccaagacc 26073903
Score = 178 bits (90), Expect = 4e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 26074268 atgttgattcccagttgagcatagattggcgagaagaatccgtcaacaaaatgaatgaac 26074327
Query: 799 caccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26074328 caccatgtgatgtagaatgttattgctatggggaagagaattacac 26074373
Score = 170 bits (86), Expect = 9e-040
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 341 cgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaaga 400
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 26073250 cgatgccttcacggacagaaagatttggccttataacatccttcgaatttaccatgaaga 26073309
Query: 401 tatcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccag 460
|||||||||| ||||||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct: 26073310 tatcaccaatataaagatggttggttgggacatacacgcagtacagttcctcttgaccag 26073369
Query: 461 aataactctg 470
|||||||||
Sbjct: 26073370 tataactctg 26073379
Score = 145 bits (73), Expect = 5e-032
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 468 ctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgcct 527
|||||| || ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 26073546 ctggagagagactgatgatgtaatgaaaccaaatgcatattctccaatacgaggatgcct 26073605
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 26073606 tatgatgaccacttccttgaatgcctgtttgttctgatctg 26073646
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||||||||| || ||||| ||
Sbjct: 26073040 tcagcttctgcttgctcctgttctgtctccaagaattgtctgtgggtccagagttgatag 26073099
Query: 303 aatttggggcatcgacataccaccagatacaacaatttc 341
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 26073100 aatttggggcatcgacatgccaccagatacaacaatttc 26073138
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 26075031 catccagtcatgaatttctttgaagcccaacttcggaccaccttatgaaaagcct 26075085
>dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M07, full
insert sequence
Length = 1309
Score = 186 bits (94), Expect = 1e-044
Identities = 313/386 (81%)
Strand = Plus / Minus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 679 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 620
Query: 547 aacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtag 606
|| || |||||||||||||| ||||| || |||||||| || ||||| |||||||||||
Sbjct: 619 aatgcatgtttgttctgatcaggtgaaatggcagcactgatctgcttggatgcattgtaa 560
Query: 607 atatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcc 666
||||| ||||||| ||||| | ||| |||| |||||| || || | || | |||||||
Sbjct: 559 atatggcgaacaaatggcattctctttataaaccactctcccagaccgagaatagatgcc 500
Query: 667 ccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaag 726
|| |||||||||||||| || || || | || ||| ||||| | | || || |||||
Sbjct: 499 cccagccaagatgacatgaacacaccaaccacaaaaatgaatgatattgaagttacaaaa 440
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
||||| || ||||| |||||||| || |||||||| ||||| ||||| || ||||| |||
Sbjct: 439 ccaagtccaaatatattgattccaagatgagcatatattggggagaaaaacccatccaca 380
Query: 787 aaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacat 846
|| ||| ||||||||| ||||| ||||| || | ||| | || ||||| |||||||||
Sbjct: 379 aagcgaaagaaccaccatgtgatatagaatgtaactgcaagtggaaagaggattacacat 320
Query: 847 ccagtcatgaacttctttgaagccca 872
|| |||||||||||||| || |||||
Sbjct: 319 ccggtcatgaacttcttggacgccca 294
Score = 46.1 bits (23), Expect = 0.034
Identities = 113/143 (79%)
Strand = Plus / Minus
Query: 301 agaatttggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaa 360
|||| ||| ||||| ||||| || || || || ||||| |||||||||||||| |||||
Sbjct: 865 agaacttgaggcattgacatgcctcctgaaacgacaatctcgatgccttcacgaacagat 806
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
| ||||| || || ||||| |||| || |||| || || || |||||||| ||||||
Sbjct: 805 aagtttggtctaatcacatcacttgagttgaccagaaatatgtccccaatgtagagatgg 746
Query: 421 ttcgttgggacatagacgcagta 443
|| ||||| ||||| || |||||
Sbjct: 745 ttggttggtacatatacacagta 723
>gb|AU166943.1|AU166943 AU166943 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C60125, mRNA sequence
Length = 454
Score = 133 bits (67), Expect = 2e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 243 tcagcttctgcttggtccggttctgtccccaaggatcatctgtgggtcgagggttgacag 302
|||||||||||||| ||| |||||||| ||||| || |||| ||||| || ||||| ||
Sbjct: 114 tcagcttctgcttgctcctgttctgtctccaagaattgtctgggggtccagagttgatag 55
Query: 303 aatttggggcatcgacataccaccagatacaacaatttcgatgccttcacg 353
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 aatttggggcatcgacatgccaccagatacaacaatttcgatgccttcacg 4
>gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_1A, mRNA sequence
Length = 366
Score = 89.7 bits (45), Expect = 3e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 97 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 38
Query: 547 aacgcctgtttgttctgatctggtgatattgcagcac 583
|| || |||||||||||||| ||||| || |||||||
Sbjct: 37 aatgcatgtttgttctgatcaggtgaaatggcagcac 1
Score = 44.1 bits (22), Expect = 0.13
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 334 acaatttcgatgccttcacgcacagaaagatttggccttatgacatcctttgaattcacc 393
||||| |||||||||||||| ||||| | ||||| || || ||||| |||| || |||
Sbjct: 250 acaatctcgatgccttcacgaacagataagtttggtctaatcacatcacttgagttgacc 191
Query: 394 atgaagatatcaccaatgtaaagatggttcgttgggacatagacgcagta 443
| || || || |||||||| |||||||| ||||| ||||| || |||||
Sbjct: 190 agaaatatgtccccaatgtagagatggttggttggtacatatacacagta 141
>gb|AACV01003836.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003836, whole
genome shotgun sequence
Length = 32497
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 24625 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 24566
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 24565 aatgcatgtttgttctgatctg 24544
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 24469 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 24410
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 24409 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 24354
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0693E08
Length = 157969
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 83405 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 83464
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 83465 aatgcatgtttgttctgatctg 83486
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 83561 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 83620
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 83621 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 83676
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 3649569 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 3649628
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 3649629 aatgcatgtttgttctgatctg 3649650
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 3649725 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 3649784
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 3649785 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 3649840
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 9679235 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 9679294
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 9679295 aatgcatgtttgttctgatctg 9679316
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 9679391 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 9679450
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 9679451 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 9679506
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 9679235 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 9679294
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 9679295 aatgcatgtttgttctgatctg 9679316
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 9679391 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 9679450
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 9679451 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 9679506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 83.8 bits (42), Expect = 2e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| |||||||||||||||
Sbjct: 9619187 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatgaccacttccttg 9619246
Query: 547 aacgcctgtttgttctgatctg 568
|| || ||||||||||||||||
Sbjct: 9619247 aatgcatgtttgttctgatctg 9619268
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| || ||||| ||||||||||| ||||| ||||||| |||||
Sbjct: 9619343 ggtgaaatggcagcactgatctgcttggatgcattgtaaatatggcgaacaaatggcatt 9619402
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||| |||| |||||| || || | || | ||||||||| ||||||||||||||
Sbjct: 9619403 ctctttataaaccactctcccagaccgagaatagatgcccccagccaagatgacat 9619458
>gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_2Z, mRNA sequence
Length = 707
Score = 73.8 bits (37), Expect = 1e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|||||||| ||||| |||||||| |||| | ||||||||||| ||| |||||||||||
Sbjct: 157 gtgatgaatccaaatgcatattcgccaattctgggatgccttataatggccacttccttg 98
Query: 547 aacgcctgtttgttctgatctggtg 571
|| || |||||||||||||| ||||
Sbjct: 97 aatgcatgtttgttctgatcaggtg 73
>dbj|AK069386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H16, full
insert sequence
Length = 1192
Score = 61.9 bits (31), Expect = 6e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 793 atgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtc 852
||||||||||||||| ||||||| || || || ||||||| | || ||||||||||||
Sbjct: 313 atgaaccaccaggtggtgtagaatgtgatggcaatggggagcaagatgacacatccagtc 254
Query: 853 atgaacttctt 863
|||||||||||
Sbjct: 253 atgaacttctt 243
>gb|CF312469.1|CF312469 ABF--08-D23.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-D23, mRNA sequence
Length = 356
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||||||||||| ||| || |||| ||||| | ||| ||| || |||||||||
Sbjct: 213 ccaagaccgaatatgtcgatcccaagttttgcatatagtgggctgaaaaagccatcaaca 154
Query: 787 aaatgaatgaaccaccaggtgatgtagaacgt 818
|| ||||| |||||||| |||||| |||||||
Sbjct: 153 aattgaataaaccaccatgtgatgaagaacgt 122
>gb|C72626.1|C72626 C72626 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1952_1A, mRNA sequence
Length = 428
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 338 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 298
>gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J03 5', mRNA sequence
Length = 807
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 204 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 164
>gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15F10 5', mRNA sequence
Length = 758
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 198 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 158
>gb|CF309704.1|CF309704 ABF--03-P22.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-P22, mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 452 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 412
>gb|CF324134.1|CF324134 HDN--05-L13.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--05-L13, mRNA sequence
Length = 465
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 361 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 321
>dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D06, full
insert sequence
Length = 1271
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 363 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 323
>dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140N15, full
insert sequence
Length = 2362
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 1447 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 1407
>gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002753, whole
genome shotgun sequence
Length = 18525
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 14672 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 14712
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 37660586 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 37660626
>ref|NM_190765.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 780
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 239 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 199
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 12107969 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 12108009
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0677H08
Length = 178830
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 40390 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 40430
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 11835419 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 11835459
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 37037140 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 37037180
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
||||||||||| ||||| |||||||| |||||| |||||||
Sbjct: 37579916 ccatcaacaaattgaataaaccaccatgtgatgaagaacgt 37579956
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,271,565
Number of Sequences: 438736
Number of extensions: 1271565
Number of successful extensions: 6158
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5939
Number of HSP's gapped (non-prelim): 210
length of query: 924
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 903
effective length of database: 2,791,206,460
effective search space: 2520459433380
effective search space used: 2520459433380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)