BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA... 180 6e-043
gb|AACV01020262.1| Oryza sativa (japonica cultivar-group) c... 178 2e-042
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 178 2e-042
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
gb|AU173036.1|AU173036 AU173036 Rice cDNA from immature lea... 80 2e-012
gb|C97574.1|C97574 C97574 Rice callus Oryza sativa (japonic... 54 9e-005
dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 52 3e-004
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
>dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full
insert sequence
Length = 2535
Score = 180 bits (91), Expect = 6e-043
Identities = 232/279 (83%)
Strand = Plus / Plus
Query: 70 tgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaacctttt 129
|||| ||||| ||| ||||||||||||||||||| || |||||||| || ||||| ||||
Sbjct: 2001 tgaacgaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacatttt 2060
Query: 130 ggaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaa 189
||||||| || |||||||| ||| || |||||||| || |||||||||||||||||||
Sbjct: 2061 ggaaccgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaa 2120
Query: 190 atgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagc 249
| |||| | ||||||||| || | || ||||||| |||||||| || || ||||| |
Sbjct: 2121 acatcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac 2180
Query: 250 cctggcttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacg 309
|||||||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| ||
Sbjct: 2181 cctggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcg 2240
Query: 310 atcaagtgtttctacgggagtgcaacataaacccctgaa 348
||||||| || |||||||| ||||| ||||| |||||||
Sbjct: 2241 atcaagtcttcctacgggactgcaatataaatccctgaa 2279
>gb|AACV01020262.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020262, whole
genome shotgun sequence
Length = 47804
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Minus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 5678 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 5619
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 5618 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 5559
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 5558 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 5499
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 5498 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 5439
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 5438 gtcttcctacgggactgcaatataaatccctgaa 5405
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 4081762 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 4081821
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 4081822 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 4081881
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 4081882 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 4081941
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 4081942 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 4082001
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 4082002 gtcttcctacgggactgcaatataaatccctgaa 4082035
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463D04
Length = 145828
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 51833 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 51892
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 51893 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 51952
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 51953 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 52012
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 52013 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 52072
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 52073 gtcttcctacgggactgcaatataaatccctgaa 52106
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 104695 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 104754
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 104755 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 104814
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 104815 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 104874
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 104875 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 104934
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 104935 gtcttcctacgggactgcaatataaatccctgaa 104968
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 7690094 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 7690153
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 7690154 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 7690213
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 7690214 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 7690273
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 7690274 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 7690333
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 7690334 gtcttcctacgggactgcaatataaatccctgaa 7690367
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 17163905 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 17163964
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 17163965 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 17164024
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 17164025 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 17164084
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 17164085 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 17164144
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 17164145 gtcttcctacgggactgcaatataaatccctgaa 17164178
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 178 bits (90), Expect = 2e-042
Identities = 228/274 (83%)
Strand = Plus / Plus
Query: 75 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttggaac 134
||||| ||| ||||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 18389959 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 18390018
Query: 135 cgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtc 194
|| || |||||||| ||| || |||||||| || |||||||||||||||||||| ||
Sbjct: 18390019 cgtaccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaacatc 18390078
Query: 195 aacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagccctgg 254
|| | ||||||||| || | || ||||||| |||||||| || || ||||| ||||||
Sbjct: 18390079 aatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaaccctgg 18390138
Query: 255 cttgagattggattgccgaaataccgcaagtactggtcagcacacgtcaattacgatcaa 314
||||||||||||||| | | ||| ||||| ||||||||| | ||||| ||| |||||||
Sbjct: 18390139 cttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgatcaa 18390198
Query: 315 gtgtttctacgggagtgcaacataaacccctgaa 348
|| || |||||||| ||||| ||||| |||||||
Sbjct: 18390199 gtcttcctacgggactgcaatataaatccctgaa 18390232
>gb|AU173036.1|AU173036 AU173036 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60978, mRNA sequence
Length = 389
Score = 79.8 bits (40), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 243 ctgaagccctggcttgagattggattgccgaaataccgcaagtactggtcagcacacgtc 302
||||| || |||||||||||||||||| | ||||| ||||| |||||||| | |||||
Sbjct: 11 ctgaacccntggcttgagattggattgtccaaatatcgcaaanactggtcaaaatacgtc 70
Query: 303 aattacgatcaagtgtttctacgggagtgcaacataaacccctgaa 348
||| ||||||||| || |||||||| ||||| ||||| |||||||
Sbjct: 71 gatttcgatcaagtcttcctacgggactgcaatataaatccctgaa 116
>gb|C97574.1|C97574 C97574 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60415_8Z, mRNA sequence
Length = 758
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 287 gtcatccactacaacgggaacatgaagccatggctggagattg 329
>dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D09, full
insert sequence
Length = 2206
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 1763 gtcatccactacaacgggaacatgaagccatggctggagattg 1805
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 774858 gtcatccactacaacgggaacatgaagccatggctggagattg 774900
>gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014905, whole
genome shotgun sequence
Length = 25723
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 13965 gtcatccactacaacgggaacatgaagccatggctggagattg 14007
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1663_H12
Length = 125422
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 68399 gtcatccactacaacgggaacatgaagccatggctggagattg 68441
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 11056075 gtcatccactacaacgggaacatgaagccatggctggagattg 11056117
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 28754812 gtcatccactacaacgggaacatgaagccatggctggagattg 28754854
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 54.0 bits (27), Expect = 9e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 29624814 gtcatccactacaacgggaacatgaagccatggctggagattg 29624856
>dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OSJNBb0008L09,
*** SEQUENCING IN PROGRESS ***
Length = 154909
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 140867 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 140926
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 140927 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 140986
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 140987 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 141046
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 141047 ttggctcgagattgcaatggccaaataccgcaaatactggtc 141088
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:B1142B04
Length = 161964
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 107089 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 107148
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 107149 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 107208
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 107209 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 107268
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 107269 ttggctcgagattgcaatggccaaataccgcaaatactggtc 107310
>gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018784, whole
genome shotgun sequence
Length = 33949
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Minus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 3516 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 3457
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 3456 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 3397
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 3396 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 3337
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 3336 ttggctcgagattgcaatggccaaataccgcaaatactggtc 3295
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 24253286 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 24253345
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 24253346 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 24253405
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 24253406 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 24253465
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 24253466 ttggctcgagattgcaatggccaaataccgcaaatactggtc 24253507
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 15731732 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 15731791
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 15731792 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 15731851
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 15731852 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 15731911
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 15731912 ttggctcgagattgcaatggccaaataccgcaaatactggtc 15731953
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 23333738 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 23333797
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 23333798 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 23333857
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 23333858 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 23333917
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 23333918 ttggctcgagattgcaatggccaaataccgcaaatactggtc 23333959
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 52.0 bits (26), Expect = 3e-004
Identities = 173/222 (77%)
Strand = Plus / Plus
Query: 71 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttttg 130
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || || ||
Sbjct: 24491373 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 24491432
Query: 131 gaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggtacaacccaaa 190
||||| || |||||||| |||| ||||||| | | || || || ||||| |||||
Sbjct: 24491433 gaaccaaacattccctcttgatcacaaatggcatctactggggctaggatacaagccaaa 24491492
Query: 191 tgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaaacctgaagcc 250
||| || ||||||||| | |||| ||||| || ||||||||||| || | ||| ||
Sbjct: 24491493 tgtgaatcaaaaggatatcgagggagcagctgtgatacactacaacgggaatcggaaacc 24491552
Query: 251 ctggcttgagattggattgccgaaataccgcaagtactggtc 292
||||| ||||||| | || | ||||||||||| ||||||||
Sbjct: 24491553 ttggctcgagattgcaatggccaaataccgcaaatactggtc 24491594
>ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2181
Score = 50.1 bits (25), Expect = 0.001
Identities = 160/205 (78%)
Strand = Plus / Plus
Query: 88 tgtggaagctaggtaccctccctgctggccttgtaaccttttggaaccgcacgttccctc 147
|||||||| |||| || ||||||||||| ||||| || || ||||||| || |||||||
Sbjct: 1922 tgtggaagttaggaacactccctgctggtcttgtgacattctggaaccaaacattccctc 1981
Query: 148 tcgatcgttcgtggcatcaattaggacttgggtacaacccaaatgtcaacgttaaggata 207
| |||| ||||||| | | || || || ||||| |||||||| || |||||||
Sbjct: 1982 ttgatcacaaatggcatctactggggctaggatacaagccaaatgtgaatcaaaaggata 2041
Query: 208 tcaggcgagcggctgtcatccactacaacggaaacctgaagccctggcttgagattggat 267
|| | |||| ||||| || ||||||||||| || | ||| || ||||| ||||||| |
Sbjct: 2042 tcgagggagcagctgtgatacactacaacgggaatcggaaaccttggctcgagattgcaa 2101
Query: 268 tgccgaaataccgcaagtactggtc 292
|| | ||||||||||| ||||||||
Sbjct: 2102 tggccaaataccgcaaatactggtc 2126
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 882,677
Number of Sequences: 438736
Number of extensions: 882677
Number of successful extensions: 18494
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18053
Number of HSP's gapped (non-prelim): 441
length of query: 595
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 574
effective length of database: 2,791,206,460
effective search space: 1602152508040
effective search space used: 1602152508040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)