BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
gb|AACV01020262.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 100 2e-018
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA 96 3e-017
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 84 1e-013
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|AU173036.1|AU173036 AU173036 Rice cDNA from immature lea... 60 2e-006
dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AQ362208.1|AQ362208 nbxb0029P14f CUGI Rice BAC Library O... 48 0.006
gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (j... 44 0.099
dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chro... 44 0.099
dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chro... 44 0.099
dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AK119405.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AP005630.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 44 0.099
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.099
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.099
ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-... 44 0.099
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 44 0.099
dbj|AP005567.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 44 0.099
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.099
>dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full
insert sequence
Length = 2535
Score = 111 bits (56), Expect = 5e-022
Identities = 285/359 (79%), Gaps = 3/359 (0%)
Strand = Plus / Plus
Query: 11 ggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaacatcacc 70
|||||||| ||||||||||| |||| ||| | |||| |||||||| ||||| || ||
Sbjct: 1916 ggttgggcgtatggcatgaatgtgttcgatctatctgagtggagaagacaaaagattact 1975
Query: 71 gaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagctaggtacc 130
|| |||||||| | ||||| | |||| ||||| ||| |||||||||||||||||||
Sbjct: 1976 gacgtctaccacaattggcaaagactgaacgaaaataggatattgtggaagctaggtact 2035
Query: 131 ctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgttcgtggc 190
|| |||||||| || ||||| || |||||||| ||| ||||||||| ||| || ||||
Sbjct: 2036 cttcctgctggtctcgtaacattttggaaccg--taccttccctcttcatcactcctggc 2093
Query: 191 atcaactagggcttgggtacaacccaaatgtcaacgaaaaggatataaggcgagcgacag 250
|||| | || ||||||||||||||||| |||| || |||||||| || | || | |
Sbjct: 2094 atcagttgggacttgggtacaacccaaacatcaatgagaaggatatccggagggcatctg 2153
Query: 251 tcatccacttcaacggaaacttgaagctcctggcttgagattggattgcccaaataccgc 310
|||| |||| ||| || || |||| | |||||||||||||||||||| ||| ||| |||
Sbjct: 2154 tcatacactacaatggtaatctgaaac-cctggcttgagattggattgtccagatatcgc 2212
Query: 311 aagtactggtcagcacacgtcaattacgaccaagtgtttctacaagagtgcaatataaa 369
|| ||||||||| | ||||| ||| ||| ||||| || |||| || |||||||||||
Sbjct: 2213 aaatactggtcaaaatacgtcgatttcgatcaagtcttcctacgggactgcaatataaa 2271
>gb|AACV01020262.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020262, whole
genome shotgun sequence
Length = 47804
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Minus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 5678 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 5619
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 5618 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 5561
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 5560 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 5502
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 5501 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 5442
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 5441 caagtcttcctacgggactgcaatataaa 5413
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 4081762 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 4081821
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 4081822 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 4081879
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 4081880 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 4081938
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 4081939 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 4081998
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 4081999 caagtcttcctacgggactgcaatataaa 4082027
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463D04
Length = 145828
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 51833 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 51892
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 51893 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 51950
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 51951 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 52009
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 52010 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 52069
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 52070 caagtcttcctacgggactgcaatataaa 52098
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 104695 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 104754
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 104755 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 104812
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 104813 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 104871
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 104872 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 104931
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 104932 caagtcttcctacgggactgcaatataaa 104960
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 7690094 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 7690153
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 7690154 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 7690211
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 7690212 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 7690270
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 7690271 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 7690330
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 7690331 caagtcttcctacgggactgcaatataaa 7690359
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 10038779 atgcatgtggctgggcatatggaatgaacatctttgat 10038742
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 17163905 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 17163964
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 17163965 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 17164022
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 17164023 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 17164081
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 17164082 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 17164141
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 17164142 caagtcttcctacgggactgcaatataaa 17164170
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 19512590 atgcatgtggctgggcatatggaatgaacatctttgat 19512553
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 99.6 bits (50), Expect = 2e-018
Identities = 216/269 (80%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 101 gaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctggaac 160
||||| ||| ||||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 18389959 gaaaataggatattgtggaagctaggtactcttcctgctggtctcgtaacattttggaac 18390018
Query: 161 cgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaacccaaatg 220
|| ||| ||||||||| ||| || |||||||| | || |||||||||||||||||
Sbjct: 18390019 cg--taccttccctcttcatcactcctggcatcagttgggacttgggtacaacccaaaca 18390076
Query: 221 tcaacgaaaaggatataaggcgagcgacagtcatccacttcaacggaaacttgaagctcc 280
|||| || |||||||| || | || | ||||| |||| ||| || || |||| | ||
Sbjct: 18390077 tcaatgagaaggatatccggagggcatctgtcatacactacaatggtaatctgaaac-cc 18390135
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||| ||| ||||| ||||||||| | ||||| ||| |||
Sbjct: 18390136 tggcttgagattggattgtccagatatcgcaaatactggtcaaaatacgtcgatttcgat 18390195
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 18390196 caagtcttcctacgggactgcaatataaa 18390224
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 20556493 atgcatgtggctgggcatatggaatgaacatctttgat 20556456
>ref|XM_483148.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2181
Score = 95.6 bits (48), Expect = 3e-017
Identities = 180/223 (80%), Gaps = 2/223 (0%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaacatcaccgag 73
|||||||||||||||||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 1822 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagcgtaatattactgat 1881
Query: 74 gtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctc 133
|| ||||| ||||||| | |||||| | || ||| |||||||| |||| || |||
Sbjct: 1882 gtttaccactactggcaggaacaaaatgaacatagactactgtggaagttaggaacactc 1941
Query: 134 cctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgttcgtggcatc 193
|||||||| ||||| || ||||||||| || || ||||||||||||| |||||||
Sbjct: 1942 cctgctggtcttgtgacattctggaac--caaacattccctcttgatcacaaatggcatc 1999
Query: 194 aactagggcttgggtacaacccaaatgtcaacgaaaaggatat 236
||| ||||| || ||||| |||||||| || ||||||||||
Sbjct: 2000 tactggggctaggatacaagccaaatgtgaatcaaaaggatat 2042
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 2086 tggctcgagattgcaatggccaaataccgcaaatactggtc 2126
>dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OSJNBb0008L09,
*** SEQUENCING IN PROGRESS ***
Length = 154909
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 140305 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 140350
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 140867 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 140926
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 140927 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 140984
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 140985 aatgtgaatcaaaaggatat 141004
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 141048 tggctcgagattgcaatggccaaataccgcaaatactggtc 141088
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:B1142B04
Length = 161964
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106527 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 106572
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 107089 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 107148
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 107149 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 107206
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 107207 aatgtgaatcaaaaggatat 107226
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 107270 tggctcgagattgcaatggccaaataccgcaaatactggtc 107310
>gb|AACV01018784.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018784, whole
genome shotgun sequence
Length = 33949
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4078 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 4033
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Minus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 3516 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 3457
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 3456 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 3399
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 3398 aatgtgaatcaaaaggatat 3379
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 3335 tggctcgagattgcaatggccaaataccgcaaatactggtc 3295
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24252724 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 24252769
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 24253286 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 24253345
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 24253346 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 24253403
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 24253404 aatgtgaatcaaaaggatat 24253423
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 24253467 tggctcgagattgcaatggccaaataccgcaaatactggtc 24253507
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15731170 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 15731215
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 15731732 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 15731791
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 15731792 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 15731849
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 15731850 aatgtgaatcaaaaggatat 15731869
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 15731913 tggctcgagattgcaatggccaaataccgcaaatactggtc 15731953
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 23333176 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 23333221
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 23333738 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 23333797
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 23333798 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 23333855
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 23333856 aatgtgaatcaaaaggatat 23333875
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 23333919 tggctcgagattgcaatggccaaataccgcaaatactggtc 23333959
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 14 tgggcatatggcatgaacatgtttgatttgtctgggtggagaaagc 59
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24490811 tgggcatatggcatgaacatgtttgatttgtctgagtggagaaagc 24490856
Score = 58.0 bits (29), Expect = 7e-006
Identities = 113/140 (80%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 97 gaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttgtaaccttctg 156
||||||| | || ||| |||||||| |||| || ||||||||||| ||||| || |||||
Sbjct: 24491373 gaatgaacatagactactgtggaagttaggaacactccctgctggtcttgtgacattctg 24491432
Query: 157 gaaccgcatacgttccctcttgatcgttcgtggcatcaactagggcttgggtacaaccca 216
|||| || || ||||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 24491433 gaac--caaacattccctcttgatcacaaatggcatctactggggctaggatacaagcca 24491490
Query: 217 aatgtcaacgaaaaggatat 236
||||| || ||||||||||
Sbjct: 24491491 aatgtgaatcaaaaggatat 24491510
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtc 321
||||| ||||||| | || ||||||||||||| ||||||||
Sbjct: 24491554 tggctcgagattgcaatggccaaataccgcaaatactggtc 24491594
>gb|AU173036.1|AU173036 AU173036 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60978, mRNA sequence
Length = 389
Score = 60.0 bits (30), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 281 tggcttgagattggattgcccaaataccgcaagtactggtcagcacacgtcaattacgac 340
|||||||||||||||||| ||||||| ||||| |||||||| | ||||| ||| |||
Sbjct: 20 tggcttgagattggattgtccaaatatcgcaaanactggtcaaaatacgtcgatttcgat 79
Query: 341 caagtgtttctacaagagtgcaatataaa 369
||||| || |||| || |||||||||||
Sbjct: 80 caagtcttcctacgggactgcaatataaa 108
>dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D09, full
insert sequence
Length = 2206
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 1518 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 1558
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 774321 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 774361
>gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014905, whole
genome shotgun sequence
Length = 25723
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 13428 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 13468
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1663_H12
Length = 125422
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 67862 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 67902
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 11055538 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 11055578
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 11765198 catgcttgtgggtgggcttttgggatgaacatgtttga 11765161
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 28754275 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 28754315
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 29463935 catgcttgtgggtgggcttttgggatgaacatgtttga 29463898
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgatttg 43
|||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 29624277 atgcttgtggctgggcgtatggaatgaatatgtttgatttg 29624317
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 30433246 catgcttgtgggtgggcttttgggatgaacatgtttga 30433209
>gb|AQ362208.1|AQ362208 nbxb0029P14f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0029P14f, DNA sequence
Length = 768
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ggcatatggcatgaacatgtttga 39
||||||||||||||||||||||||
Sbjct: 243 ggcatatggcatgaacatgtttga 266
>gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03I06 3', mRNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 744 atgcatgtggatgggcatatggcatgaacttctttgat 707
>dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0416F07, ***
SEQUENCING IN PROGRESS ***
Length = 136073
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 38327 atgcatgtggatgggcatatggcatgaacttctttgat 38364
>dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1165_E01,
*** SEQUENCING IN PROGRESS ***
Length = 101546
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 54492 catgcttgtgggtgggcttttgggatgaacatgtttga 54529
>dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023H24, full
insert sequence
Length = 2047
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 1320 atgcatgtggatgggcatatggcatgaacttctttgat 1357
>dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K22, full
insert sequence
Length = 2023
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 1298 atgcatgtggatgggcatatggcatgaacttctttgat 1335
>dbj|AK119405.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E10, full
insert sequence
Length = 2494
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 1759 atgcatgtggctgggcatatggaatgaacatctttgat 1796
>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0021C10
Length = 119527
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 16136 atgcatgtggatgggcatatggcatgaacttctttgat 16099
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 70607 catgcttgtgggtgggcttttgggatgaacatgtttga 70570
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 70607 catgcttgtgggtgggcttttgggatgaacatgtttga 70570
>gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004388, whole
genome shotgun sequence
Length = 12689
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 7084 atgcatgtggatgggcatatggcatgaacttctttgat 7047
>gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014968, whole
genome shotgun sequence
Length = 17272
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||| ||||| | ||| ||||||||||||||
Sbjct: 5819 catgcttgtgggtgggcttttgggatgaacatgtttga 5782
>gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020445, whole
genome shotgun sequence
Length = 25627
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 22992 atgcatgtggctgggcatatggaatgaacatctttgat 23029
>ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2022
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 1297 atgcatgtggatgggcatatggcatgaacttctttgat 1334
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 3722309 atgcatgtggatgggcatatggcatgaacttctttgat 3722272
>ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0021C10.5
mRNA
Length = 2047
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 1320 atgcatgtggatgggcatatggcatgaacttctttgat 1357
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 22151 atgcatgtggctgggcatatggaatgaacatctttgat 22114
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1254_E07
Length = 124028
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 74140 atgcatgtggctgggcatatggaatgaacatctttgat 74103
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 449993 atgcatgtggctgggcatatggaatgaacatctttgat 449956
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 3890634 atgcatgtggatgggcatatggcatgaacttctttgat 3890597
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 17343698 atgcatgtggatgggcatatggcatgaacttctttgat 17343661
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 atgcttgtggttgggcatatggcatgaacatgtttgat 40
|||| ||||| |||||||||||||||||| | ||||||
Sbjct: 17660122 atgcatgtggatgggcatatggcatgaacttctttgat 17660085
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 886,052
Number of Sequences: 438736
Number of extensions: 886052
Number of successful extensions: 4182
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3978
Number of HSP's gapped (non-prelim): 195
length of query: 689
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 668
effective length of database: 2,791,206,460
effective search space: 1864525915280
effective search space used: 1864525915280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)