BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042337.2.1
(945 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA... 204 6e-050
dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA... 204 6e-050
gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 ... 204 6e-050
gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) c... 204 6e-050
ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA 204 6e-050
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 204 6e-050
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 204 6e-050
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 204 6e-050
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 204 6e-050
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 204 6e-050
gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (j... 149 3e-033
gb|CF329812.1|CF329812 NACL--05-E11.g1 Rice callus plasmid ... 127 1e-026
ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA 115 4e-023
gb|AQ288789.1|AQ288789 nbxb0033H21r CUGI Rice BAC Library O... 96 4e-017
gb|C97610.1|C97610 C97610 Rice callus Oryza sativa (japonic... 76 4e-011
gb|CB650254.1|CB650254 OSJNEb14J19.r OSJNEb Oryza sativa (j... 52 6e-004
ref|XM_469851.1| Oryza sativa (japonica cultivar-group), mRNA 52 6e-004
gb|AQ160774.1|AQ160774 nbxb0005P20f CUGI Rice BAC Library O... 50 0.002
gb|DU168518.1|DU168518 UCDRdSpm855_3.1 UCD RdSpm Rice Inser... 50 0.002
dbj|AK107231.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|C97611.1|C97611 C97611 Rice callus Oryza sativa (japonic... 46 0.035
gb|CB672252.1|CB672252 OSJNEe06D05.r OSJNEe Oryza sativa (j... 46 0.035
emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromoso... 46 0.035
emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromoso... 46 0.035
dbj|AP004812.3| Oryza sativa (japonica cultivar-group) geno... 46 0.035
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.035
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 46 0.035
gb|AACV01003560.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
gb|AACV01009000.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
ref|XM_464500.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.035
ref|XM_471339.1| Oryza sativa (japonica cultivar-group), p... 46 0.035
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 46 0.035
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 46 0.035
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.035
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.035
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.035
>dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full
insert sequence
Length = 1867
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 1510 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 1451
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 1450 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 1391
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 1390 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 1331
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 1330 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 1271
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 1270 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 1211
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 1210 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 1151
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 1150 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 1091
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 1090 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 1031
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 1030 atcgcccattc 1020
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 963 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 921
>dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F09, full
insert sequence
Length = 1860
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 1509 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 1450
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 1449 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 1390
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 1389 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 1330
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 1329 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 1270
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 1269 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 1210
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 1209 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 1150
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 1149 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 1090
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 1089 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 1030
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 1029 atcgcccattc 1019
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 962 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 920
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
sequence
Length = 128017
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 62407 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 62348
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 62347 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 62288
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 62287 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 62228
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 62227 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 62168
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 62167 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 62108
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 62107 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 62048
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 62047 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 61988
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 61987 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 61928
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 61927 atcgcccattc 61917
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 55598 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 55539
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 55538 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 55479
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 55478 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 55419
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 55418 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 55375
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 55810 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 55751
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 55750 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 55691
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 55690 ccgaacggcatc 55679
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 61134 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 61092
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 67693 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 67644
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 54004 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 53948
>gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007961, whole
genome shotgun sequence
Length = 50131
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Plus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 14898 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 14957
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 14958 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 15017
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 15018 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 15077
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 15078 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 15137
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 15138 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 15197
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 15198 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 15257
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 15258 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 15317
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 15318 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 15377
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 15378 atcgcccattc 15388
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 21706 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 21765
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 21766 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 21825
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 21826 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 21885
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 21886 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 21929
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 21494 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 21553
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 21554 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 21613
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 21614 ccgaacggcatc 21625
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 16171 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 16213
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 9612 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 9661
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 23300 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 23356
>ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2199
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 2114 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 2055
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 2054 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 1995
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 1994 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 1935
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 1934 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 1875
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 1874 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 1815
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 1814 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 1755
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 1754 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 1695
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 1694 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 1635
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 1634 atcgcccattc 1624
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 1567 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 1525
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 321173 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 321114
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 321113 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 321054
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 321053 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 320994
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 320993 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 320934
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 320933 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 320874
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 320873 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 320814
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 320813 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 320754
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 320753 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 320694
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 320693 atcgcccattc 320683
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 314364 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 314305
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 314304 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 314245
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 314244 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 314185
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 314184 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 314141
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 314576 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 314517
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 314516 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 314457
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 314456 ccgaacggcatc 314445
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 319900 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 319858
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 326459 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 326410
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 312770 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 312714
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 4785789 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 4785730
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 4785729 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 4785670
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 4785669 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 4785610
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 4785609 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 4785550
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 4785549 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 4785490
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 4785489 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 4785430
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 4785429 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 4785370
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 4785369 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 4785310
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 4785309 atcgcccattc 4785299
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 4778981 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 4778922
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 4778921 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 4778862
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 4778861 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 4778802
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 4778801 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 4778758
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 4779193 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 4779134
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 4779133 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 4779074
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 4779073 ccgaacggcatc 4779062
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 4784516 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 4784474
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 4791075 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 4791026
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 4777387 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 4777331
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 32051952 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 32051893
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 32051892 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 32051833
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 32051832 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 32051773
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 32051772 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 32051713
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 32051712 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 32051653
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 32051652 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 32051593
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 32051592 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 32051533
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 32051532 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 32051473
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 32051472 atcgcccattc 32051462
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 32045144 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 32045085
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 32045084 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 32045025
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 32045024 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 32044965
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 32044964 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 32044921
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 32045356 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 32045297
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 32045296 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 32045237
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 32045236 ccgaacggcatc 32045225
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 32050679 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 32050637
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 32057238 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 32057189
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 32043550 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 32043494
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 31232289 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 31232230
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 31232229 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 31232170
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 31232169 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 31232110
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 31232109 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 31232050
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 31232049 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 31231990
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 31231989 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 31231930
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 31231929 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 31231870
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 31231869 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 31231810
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 31231809 atcgcccattc 31231799
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 31225480 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 31225421
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 31225420 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 31225361
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 31225360 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 31225301
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 31225300 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 31225257
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 31225692 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 31225633
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 31225632 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 31225573
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 31225572 ccgaacggcatc 31225561
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 31231016 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 31230974
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 31237575 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 31237526
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 31223886 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 31223830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 204 bits (103), Expect = 6e-050
Identities = 394/491 (80%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 31141766 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 31141707
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 31141706 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 31141647
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 31141646 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 31141587
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | || ||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 31141586 tccggcatgaacttctccggctcctcccacaccgccgggtcacggtggatggcgtacgcg 31141527
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | ||||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 31141526 ttgatgagcaacatcgacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 31141467
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||||||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 31141466 gactcgtgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 31141407
Query: 712 cagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcagccgggagtgccccgcg 771
|| ||||||||||||||||| | || |||||||||| || ||| || |||| || ||
Sbjct: 31141406 cactggaggtagccgaggcgagtcacgtcgtcggcggtgatcaggcgagagttgccgacg 31141347
Query: 772 gacgcgtcaatctccgcctgcgctttctccagaacatcggggtggcttagcagcagcgac 831
|| ||||| ||||| || |||||||||| || ||||||||| | ||||| ||||||
Sbjct: 31141346 gatgcgtcgatctcggcttgcgctttcttgagtgtgtcggggtggttcagcagtagcgac 31141287
Query: 832 atcgcccattc 842
|||||||||||
Sbjct: 31141286 atcgcccattc 31141276
Score = 111 bits (56), Expect = 7e-022
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 31134957 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 31134898
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 31134897 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 31134838
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 31134837 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 31134778
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttct 799
||||||| || |||||||||| ||||| || || |||||||
Sbjct: 31134777 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttct 31134734
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 31135169 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 31135110
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 31135109 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 31135050
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 31135049 ccgaacggcatc 31135038
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||||| |||| |||||||||||||| |||| |||||||||
Sbjct: 31140493 tgatcatgttatcggtgtacacctccggctctgtcttctgcag 31140451
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 31147052 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 31147003
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 31133363 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 31133307
>gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P15 3', mRNA sequence
Length = 704
Score = 149 bits (75), Expect = 3e-033
Identities = 294/367 (80%)
Strand = Plus / Plus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 338 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 397
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgagggcctctccggggcatttc 471
|||| ||| ||||| |||| ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 398 atcagcgtgcccagcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctc 457
Query: 472 cgccttcccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgc 531
||||| ||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct: 458 cgcctccccatcccgaacggcatcaagagattgccgtcgcacccgccgtcctcgaacctc 517
Query: 532 tccggcctgaacgcggctgggtccgcccatatcgcggggtccctgtggatggcgtacacg 591
|||||| ||||| | |||||| |||| | ||| ||||| | ||||||||||||| ||
Sbjct: 518 tccggcatgaacttctccgggtcctcccacaccgccgggtcacggtggatggcgtacgcg 577
Query: 592 ttgacgaggagcatcgtcccgctcggcacacggtggccgccgaccgtgcagtcggcggtg 651
|||| ||| | |||| ||||| ||| | || |||||||||| |||||||||||| |
Sbjct: 578 ttgatgagcaacatccacccgcgcgggatgttgtagccgccgaccttgcagtcggcggag 637
Query: 652 gactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggtctcgctgacgatg 711
||||| ||||||| ||| ||||| || | |||||||| || || ||||| |||||||||
Sbjct: 638 gactcctgcgggaggagcatcggcgcggcggggtacaggcggagcgtctccctgacgatg 697
Query: 712 cagtgga 718
|| ||||
Sbjct: 698 cactgga 704
>gb|CF329812.1|CF329812 NACL--05-E11.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-E11, mRNA sequence
Length = 404
Score = 127 bits (64), Expect = 1e-026
Identities = 178/216 (82%)
Strand = Plus / Minus
Query: 627 gccgccgaccgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggta 686
|||||||||| |||||||||||| |||||||||||||| ||| ||||| || | |||||
Sbjct: 326 gccgccgaccttgcagtcggcggaggactcgtgcgggaggagcatcggcgcggcggggta 267
Query: 687 cagccgcagggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggc 746
||| || || ||||| ||||||||||| ||||||||||||||||| | || |||||||||
Sbjct: 266 caggcggagcgtctccctgacgatgcactggaggtagccgaggcgagtcacgtcgtcggc 207
Query: 747 gccgagcagccgggagtgccccgcggacgcgtcaatctccgcctgcgctttctccagaac 806
| || ||| || |||| || |||| ||||| ||||| || |||||||||| ||
Sbjct: 206 ggtgatcaggcgagagttgccgacggatgcgtcgatctcggcttgcgctttcttgagtgt 147
Query: 807 atcggggtggcttagcagcagcgacatcgcccattc 842
||||||||| | ||||| |||||||||||||||||
Sbjct: 146 gtcggggtggttcagcagtagcgacatcgcccattc 111
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1539
Score = 115 bits (58), Expect = 4e-023
Identities = 289/366 (78%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| ||||| ||||||||||||| ||| || | || |||||||||
Sbjct: 1233 gtggatggcgtacgcgttcacgagcagcatcgtcccgcgcgggacgctgtagccgccgac 1174
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||||||| |||||||||||||| ||| ||||| | | ||||| || || ||
Sbjct: 1173 ctcgcagtcggcggaggactcgtgcgggatgagcatcggcgccgcggggtagaggcggag 1114
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcgccgagcag 755
||||| ||||||||||| ||||| ||| || ||| |||| |||||||||| || |||
Sbjct: 1113 cgtctccctgacgatgcactggagataggtgatgcggggcacgtcgtcggcggtgatcag 1054
Query: 756 ccgggagtgccccgcggacgcgtcaatctccgcctgcgctttctccagaacatcggggtg 815
||||||| || |||||||||| ||||| || || ||||||| || || |||||
Sbjct: 1053 gcgggagttgccgacggacgcgtcgatctcggcttgtgctttcttgagcgtttctgggtg 994
Query: 816 gcttagcagcagcgacatcgcccattccgccgtcgtcgccgttgtttcagaacccccagc 875
| | |||| ||||||||| |||||||| |||||||| ||||| || | || | |
Sbjct: 993 gttcagcaacagcgacattgcccattctatcgtcgtcgaggttgtctctgttcctgctcc 934
Query: 876 gaacatgctcgagcacagagccatgatcatggtatccgtgtacacctccggttctgactt 935
|||| | ||||||| |||||| |||||||| | || |||||||||||||| | || |||
Sbjct: 933 taacaagttcgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtctt 874
Query: 936 ctgcag 941
||||||
Sbjct: 873 ctgcag 868
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 1445 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 1386
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 1385 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 1326
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 1325 ccgaacggcatc 1314
>gb|AQ288789.1|AQ288789 nbxb0033H21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0033H21r, DNA sequence
Length = 644
Score = 95.6 bits (48), Expect = 4e-017
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 364 gccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatcaacgtcccc 423
||||| |||||||| |||| ||||| | |||||||||||||||||||||| ||| |||
Sbjct: 167 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 226
Query: 424 aggaccagccccagcgtccgcagcgcgagggcctctccggggcatttccgccttcccatc 483
|| |||||||||| ||| |||| || || | ||| |||||||| ||||||| ||||||
Sbjct: 227 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 286
Query: 484 ccgaacggcatc 495
||||||||||||
Sbjct: 287 ccgaacggcatc 298
>gb|C97610.1|C97610 C97610 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60478_7Z, mRNA sequence
Length = 719
Score = 75.8 bits (38), Expect = 4e-011
Identities = 121/146 (82%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 352 ccgcccccttcggccatatcgacctcggcgccgccgaccgtgtcccagtcgaagcactgg 411
||||| ||||| | ||| |||||||| ||||| ||||| | ||||||||||||||||||
Sbjct: 337 ccgccaccttcagtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactgg 278
Query: 412 atcaacgtccccaggaccagccccagcgtccgcagcgcgag-ggcctctccggggcattt 470
|||| ||| ||||| |||| ||||| || ||||| || || | ||| |||||||| |
Sbjct: 277 atcagcgtgcccagcaccaaccccactgtgcgcag-gccagcgttctcgccggggcacct 219
Query: 471 ccgccttcccatcccgaacggcatca 496
|||||| |||||||||||||||||||
Sbjct: 218 ccgcctccccatcccgaacggcatca 193
>gb|CB650254.1|CB650254 OSJNEb14J19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14J19 3', mRNA sequence
Length = 749
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 638 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 687
>ref|XM_469851.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1584
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 366 catatcgacctcggcgccgccgaccgtgtcccagtcgaagcactggatca 415
|||||| ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 1485 catatcaacctcggcgccatcgactctgtcccaatcgaagcactggatca 1436
>gb|AQ160774.1|AQ160774 nbxb0005P20f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0005P20f, DNA sequence
Length = 654
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 89 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 145
>gb|DU168518.1|DU168518 UCDRdSpm855_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm855_3.1, DNA sequence
Length = 582
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 489 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 433
>dbj|AK107231.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E04, full
insert sequence
Length = 1630
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 885 cgagcacagagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| |||||| |||||||| | || |||||||||||||| | || |||||||||
Sbjct: 949 cgagcaaagagccgtgatcatgttgtcagtgtacacctccggctgtgtcttctgcag 893
>gb|C97611.1|C97611 C97611 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60478_8A, mRNA sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.035
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 808 tcggggtggcttagcagcagcgacatcgcccattc 842
||||||||| | ||||| |||||||||||||||||
Sbjct: 503 tcggggtggttcagcagtagcgacatcgcccattc 469
>gb|CB672252.1|CB672252 OSJNEe06D05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06D05 3', mRNA sequence
Length = 736
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 407 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 466
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 467 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 509
>emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017P10,
complete sequence
Length = 175563
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 26929 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 26870
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 26869 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 26827
>emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046P18,
complete sequence
Length = 140780
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 74125 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 74066
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 74065 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 74023
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0026H03
Length = 151827
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 112088 gtagccgaggcacggcaggtcggcggcgccg 112058
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 3176186 ccgtcctcgaaccgctccggccggaac 3176160
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0458E02
Length = 154458
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 134146 ccgtcctcgaaccgctccggccggaac 134120
>gb|AACV01003560.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003560, whole
genome shotgun sequence
Length = 17908
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 8918 gtagccgaggcacggcaggtcggcggcgccg 8888
>gb|AACV01009000.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009000, whole
genome shotgun sequence
Length = 10764
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 1602 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 1661
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 1662 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 1704
>gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014656, whole
genome shotgun sequence
Length = 19030
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 1081 ccgtcctcgaaccgctccggccggaac 1107
>ref|XM_464500.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1548
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 1281 gtagccgaggcacggcaggtcggcggcgccg 1251
>ref|XM_471339.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1641
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 1230 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 1171
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 1170 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 1128
>ref|NT_079855.2| Oryza sativa (japonica cultivar-group)
Length = 2354488
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 875298 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 875239
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 875238 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 875196
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 939425 gtagccgaggcacggcaggtcggcggcgccg 939395
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 7047864 ccgtcctcgaaccgctccggccggaac 7047838
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026
genomic scaffold, whole genome shotgun sequence
Length = 11796637
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 749714 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 749655
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 749654 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 749612
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 5672576 gtagccgaggcacggcaggtcggcggcgccg 5672546
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 24746601 ccgtcctcgaaccgctccggccggaac 24746575
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 8097076 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 8097017
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 8097016 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 8096974
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 5672576 gtagccgaggcacggcaggtcggcggcgccg 5672546
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 46.1 bits (23), Expect = 0.035
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 720 gtagccgaggcgcggcaggtcgtcggcgccg 750
||||||||||| |||||||||| ||||||||
Sbjct: 5567353 gtagccgaggcacggcaggtcggcggcgccg 5567323
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 46.1 bits (23), Expect = 0.035
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 639 gcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcagggt 698
|||||| |||| |||||||||||| ||||| ||| |||| ||||| || || ||| |
Sbjct: 10202714 gcagtcagcggaggactcgtgcggtgccagcagcgggccgacggggtagaggcggaggtt 10202655
Query: 699 ctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcg 741
||| |||| |||||| ||||||||| |||| ||||||||||
Sbjct: 10202654 ctccctgatgatgcactggaggtaggggaggttcggcaggtcg 10202612
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 517 ccgtcctcgaaccgctccggcctgaac 543
|||||||||||||||||||||| ||||
Sbjct: 25710701 ccgtcctcgaaccgctccggccggaac 25710675
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,258,951
Number of Sequences: 438736
Number of extensions: 1258951
Number of successful extensions: 12178
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11744
Number of HSP's gapped (non-prelim): 415
length of query: 945
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 924
effective length of database: 2,791,206,460
effective search space: 2579074769040
effective search space used: 2579074769040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)