BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (j... 406 e-111
gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (j... 406 e-111
gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (j... 406 e-111
dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPN... 406 e-111
gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (j... 391 e-106
gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germinati... 351 3e-094
dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chro... 163 1e-037
dbj|AP004236.3| Oryza sativa (japonica cultivar-group) geno... 163 1e-037
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 163 1e-037
gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) c... 163 1e-037
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 163 1e-037
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 163 1e-037
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 163 1e-037
dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA... 151 5e-034
gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (j... 129 2e-027
gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (j... 129 2e-027
gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (j... 129 2e-027
dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
ref|XM_473529.1| Oryza sativa (japonica cultivar-group), p... 129 2e-027
gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (j... 113 1e-022
gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing t... 96 3e-017
gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing t... 94 1e-016
gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (j... 90 2e-015
gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (j... 90 2e-015
dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature lea... 86 3e-014
gb|AU183854.1|AU183854 AU183854 Rice immature leaf includin... 86 3e-014
dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (j... 80 2e-012
dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA 78 6e-012
dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 74 1e-010
gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (ja... 72 4e-010
dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAG... 70 2e-009
gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature lea... 68 6e-009
dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA,... 64 1e-007
ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA 64 1e-007
dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA,... 62 4e-007
dbj|AP005877.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
dbj|AP005179.4| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AACV01015319.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA 62 4e-007
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
dbj|AP004188.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 50 0.001
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 50 0.001
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AU101021.1|AU101021 AU101021 Rice callus Oryza sativa (j... 44 0.091
gb|AU225409.1|AU225409 AU225409 Oryza sativa Koshihikari pi... 44 0.091
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 44 0.091
gb|AACV01005685.1| Oryza sativa (japonica cultivar-group) c... 44 0.091
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 44 0.091
>gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12560, mRNA sequence
Length = 714
Score = 406 bits (205), Expect = e-111
Identities = 303/335 (90%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 136 gagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcac 195
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 196 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 255
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 256 aacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 315
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 316 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 375
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgct 297
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 376 cagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgcg 435
Query: 298 gtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||||||||||||| |||||||||||||||||
Sbjct: 436 gtgaaggagaaggtgaagagggtgatgttctactg 470
>gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N22 3', mRNA sequence
Length = 813
Score = 406 bits (205), Expect = e-111
Identities = 303/335 (90%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 619 gagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcac 560
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 559 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 500
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 499 aacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 440
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 439 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 380
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgct 297
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 379 cagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgcg 320
Query: 298 gtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||||||||||||| |||||||||||||||||
Sbjct: 319 gtgaaggagaaggtgaagagggtgatgttctactg 285
>gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04I24 3', mRNA sequence
Length = 827
Score = 406 bits (205), Expect = e-111
Identities = 303/335 (90%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 562 gagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcac 503
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 502 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 443
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 442 aacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 383
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 382 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 323
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgct 297
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 322 cagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgcg 263
Query: 298 gtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||||||||||||| |||||||||||||||||
Sbjct: 262 gtgaaggagaaggtgaagagggtgatgttctactg 228
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH
homologous protein, complete cds
Length = 3548
Score = 406 bits (205), Expect = e-111
Identities = 303/335 (90%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 2922 gagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcac 2981
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 2982 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 3041
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 3042 aacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 3101
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 3102 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 3161
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgct 297
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 3162 cagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgcg 3221
Query: 298 gtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||||||||||||| |||||||||||||||||
Sbjct: 3222 gtgaaggagaaggtgaagagggtgatgttctactg 3256
>gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01O19 3', mRNA sequence
Length = 804
Score = 391 bits (197), Expect = e-106
Identities = 301/335 (89%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 569 gagtttgatttatacctctgtagccatgctggaattcagggaacaagtaggccagctcac 510
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 509 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 450
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 449 aacctttggtacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 390
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 389 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 330
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgct 297
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 329 cagacgacgtcgaagagctccattgggacgaacggaacctcggtgaagccattgcctgcg 270
Query: 298 gtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||||||||||||| |||||||||||||||||
Sbjct: 269 gtgaaggagaaggtgaagagggtgatgttctactg 235
>gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 463
Score = 351 bits (177), Expect = 3e-094
Identities = 269/299 (89%), Gaps = 3/299 (1%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 161 gagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcac 220
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 221 taccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaac 280
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 281 aacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatac 340
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaac 240
|| || || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 341 tatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaac 400
Query: 241 ca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgc 296
|| ||||||||||||||||| ||| ||||||||| || ||||||||| |||||||
Sbjct: 401 cagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgc 459
>dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1057_A09,
*** SEQUENCING IN PROGRESS ***
Length = 105649
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 55003 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 54944
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 54943 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 54884
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 54883 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 54840
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Minus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 55353 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 55294
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 55293 cagacgaaatgcagacattgacaaacaacctttgctacac 55254
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 55954 gagtttgatttctacctctgtagccatgctggaattcagg 55915
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 55161 ttatgcacggtgcacacgctctgtttctgttg 55130
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0417D05
Length = 165752
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 113757 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 113816
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 113817 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 113876
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 113877 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 113920
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 113407 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 113466
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 113467 cagacgaaatgcagacattgacaaacaacctttgctacac 113506
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 112806 gagtttgatttctacctctgtagccatgctggaattcagg 112845
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 113599 ttatgcacggtgcacacgctctgtttctgttg 113630
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 628594 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 628653
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 628654 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 628713
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 628714 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 628757
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 628244 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 628303
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 628304 cagacgaaatgcagacattgacaaacaacctttgctacac 628343
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 627643 gagtttgatttctacctctgtagccatgctggaattcagg 627682
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 628436 ttatgcacggtgcacacgctctgtttctgttg 628467
>gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014478, whole
genome shotgun sequence
Length = 23138
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 5140 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 5199
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 5200 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 5259
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 5260 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 5303
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 4790 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 4849
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 4850 cagacgaaatgcagacattgacaaacaacctttgctacac 4889
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 4189 gagtttgatttctacctctgtagccatgctggaattcagg 4228
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 4982 ttatgcacggtgcacacgctctgtttctgttg 5013
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 4504204 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 4504263
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 4504264 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 4504323
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 4504324 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 4504367
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 4503854 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 4503913
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 4503914 cagacgaaatgcagacattgacaaacaacctttgctacac 4503953
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 4503253 gagtttgatttctacctctgtagccatgctggaattcagg 4503292
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 4504046 ttatgcacggtgcacacgctctgtttctgttg 4504077
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 22202941 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 22203000
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 22203001 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 22203060
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 22203061 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 22203104
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 22202591 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 22202650
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 22202651 cagacgaaatgcagacattgacaaacaacctttgctacac 22202690
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 22201990 gagtttgatttctacctctgtagccatgctggaattcagg 22202029
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 22202783 ttatgcacggtgcacacgctctgtttctgttg 22202814
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 163 bits (82), Expect = 1e-037
Identities = 144/164 (87%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 23163109 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 23163168
Query: 232 tcggagaaccagacg---tcgaagagctccaatggcacgaacggaggcttggtgaagccc 288
||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 23163169 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcca 23163228
Query: 289 ctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 23163229 ttgcctgcggtgaaggagaaggtgaagagggtgatgttctactg 23163272
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 23162759 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 23162818
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 23162819 cagacgaaatgcagacattgacaaacaacctttgctacac 23162858
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 23162158 gagtttgatttctacctctgtagccatgctggaattcagg 23162197
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 23162951 ttatgcacggtgcacacgctctgtttctgttg 23162982
>dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-H07, full
insert sequence
Length = 1740
Score = 151 bits (76), Expect = 5e-034
Identities = 94/100 (94%)
Strand = Plus / Minus
Query: 35 tccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacag 94
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 1213 tccagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactg 1154
Query: 95 cagacgaaatgcaaacactgacaaacaacctttgctacac 134
||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1153 cagacgaaatgcagacattgacaaacaacctttgctacac 1114
Score = 105 bits (53), Expect = 3e-020
Identities = 103/119 (86%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagagatg 231
||||||||||| || || ||||| || || || ||||||||||||||||| |||||||||
Sbjct: 863 cctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatg 804
Query: 232 tcggagaacca---gacgtcgaagagctccaatggcacgaacggaggcttggtgaagcc 287
||||||||||| ||||||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 803 tcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagcc 745
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 135 ttatgcccggtgcacacgctcggtttctgttg 166
|||||| |||||||||||||| ||||||||||
Sbjct: 1021 ttatgcacggtgcacacgctctgtttctgttg 990
>gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F17 5', mRNA sequence
Length = 788
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 644 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 585
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 584 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 525
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 524 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 465
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 464 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 416
>gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09L10 3', mRNA sequence
Length = 771
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 653 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 594
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 593 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 534
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 533 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 474
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 473 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 425
>gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03A22 3', mRNA sequence
Length = 744
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 624 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 565
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 564 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 505
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 504 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 445
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 444 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 396
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full
insert sequence
Length = 3746
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 3152 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 3211
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 3212 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 3271
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 3272 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 3331
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 3332 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 3380
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full
insert sequence
Length = 3746
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 3067 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 3126
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 3127 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 3186
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 3187 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 3246
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 3247 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 3295
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full
insert sequence
Length = 3641
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 2969 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 3028
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 3029 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 3088
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 3089 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 3148
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 3149 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 3197
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3306
Score = 129 bits (65), Expect = 2e-027
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 2929 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 2988
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 2989 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 3048
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 3049 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 3108
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 3109 tatgctcatctggcagccttccgagctcgcttttacatggagccagaga 3157
>gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C12 3', mRNA sequence
Length = 701
Score = 113 bits (57), Expect = 1e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||| ||||| ||||| |||||||| || ||||||||||| | || |||||
Sbjct: 640 gagtttgatttttacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 581
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 580 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 521
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| |||||||| |||
Sbjct: 520 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 461
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || ||||||| ||||| || || || |||||||| |||||||
Sbjct: 460 tatgctcatttggcagccttccgagctcgcttttacatggagccagaga 412
>gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 661
Score = 95.6 bits (48), Expect = 3e-017
Identities = 159/196 (81%)
Strand = Plus / Minus
Query: 8 atttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatg 67
|||||||||| ||||| |||||||| || ||||||||| | | || ||||| || ||||
Sbjct: 613 atttctacctgtgtagccatgctggcatacagggaacaggccgtcctgctcattatcatg 554
Query: 68 tcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaaccttt 127
| || |||||||||||||| || || |||||||| ||||||| || || |||||| | |
Sbjct: 553 ttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgt 494
Query: 128 gctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcac 187
||||||| ||||| ||||||| ||||| || || |||| |||||||| ||||| || |
Sbjct: 493 gctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctc 434
Query: 188 acctggcagcattccg 203
| |||||||| |||||
Sbjct: 433 atctggcagccttccg 418
>gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 602
Score = 93.7 bits (47), Expect = 1e-016
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| || ||||||||| | | || |||||
Sbjct: 433 gagtttgatttctacctgtgtagccatgctggcatacagggaacaggccgtcctgctcat 492
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| || || |||||||| ||||||| || || |||
Sbjct: 493 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 552
Query: 121 aacctttgctacacttatgcccggtgcacacgctc 155
||| | |||||||| ||||| ||||||| |||||
Sbjct: 553 aacttgtgctacacgtatgcaaggtgcactcgctc 587
>gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E11 3', mRNA sequence
Length = 825
Score = 89.7 bits (45), Expect = 2e-015
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || |||||||||||| | || || ||
Sbjct: 611 gagtttgatttctacctgtgtagccatgcgggcattcagggaacaagtcgccctgcacat 552
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| ||||| || || | ||||||| |||||||||
Sbjct: 551 tatcatgttctgtgggatgagaacaagttcactgctgatggtttgcaaactctgacaaac 492
Query: 121 aacctttgctacacttatgcccggtgcac 149
||| | |||||||| ||||| |||||||
Sbjct: 491 aacttgtgctacacctatgcaaggtgcac 463
>gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12F14 3', mRNA sequence
Length = 720
Score = 89.7 bits (45), Expect = 2e-015
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || |||||||||||| | || || ||
Sbjct: 620 gagtttgatttctacctgtgtagccatgcgggcattcagggaacaagtcgccctgcacat 561
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| ||||| || || | ||||||| |||||||||
Sbjct: 560 tatcatgttctgtgggatgagaacaagttcactgctgatggtttgcaaactctgacaaac 501
Query: 121 aacctttgctacacttatgcccggtgcac 149
||| | |||||||| ||||| |||||||
Sbjct: 500 aacttgtgctacacctatgcaaggtgcac 472
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full
insert sequence
Length = 3747
Score = 89.7 bits (45), Expect = 2e-015
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || |||||||||||| | || || ||
Sbjct: 3057 gagtttgatttctacctgtgtagccatgcgggcattcagggaacaagtcgccctgcacat 3116
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| ||||| || || | ||||||| |||||||||
Sbjct: 3117 tatcatgttctgtgggatgagaacaagttcactgctgatggtttgcaaactctgacaaac 3176
Query: 121 aacctttgctacacttatgcccggtgcac 149
||| | |||||||| ||||| |||||||
Sbjct: 3177 aacttgtgctacacctatgcaaggtgcac 3205
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full
insert sequence
Length = 2043
Score = 89.7 bits (45), Expect = 2e-015
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || |||||||||||| | || || ||
Sbjct: 1496 gagtttgatttctacctgtgtagccatgcgggcattcagggaacaagtcgccctgcacat 1555
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| || |||||||||||||| ||||| || || | ||||||| |||||||||
Sbjct: 1556 tatcatgttctgtgggatgagaacaagttcactgctgatggtttgcaaactctgacaaac 1615
Query: 121 aacctttgctacacttatgcccggtgcac 149
||| | |||||||| ||||| |||||||
Sbjct: 1616 aacttgtgctacacctatgcaaggtgcac 1644
>gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50118_1A, mRNA sequence
Length = 328
Score = 85.7 bits (43), Expect = 3e-014
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| || ||||| || |||||||||||||| || || |||||||| ||||||| ||
Sbjct: 12 gctcattatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctc 71
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| |||||| | |||||||| ||||| ||||||| ||||| || || |||| ||||||
Sbjct: 72 acgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcct 131
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 132 gcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagaga 186
>gb|AU183854.1|AU183854 AU183854 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50133, mRNA sequence
Length = 445
Score = 85.7 bits (43), Expect = 3e-014
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| || ||||| || |||||||||||||| || || |||||||| ||||||| ||
Sbjct: 12 gctcattatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctc 71
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| |||||| | |||||||| ||||| ||||||| ||||| || || |||| ||||||
Sbjct: 72 acgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcct 131
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 132 gcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagaga 186
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full
insert sequence
Length = 3638
Score = 81.8 bits (41), Expect = 4e-013
Identities = 158/197 (80%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
|||||||||||| |||| ||||| | |||||||| ||||| ||||| |||||||| |||
Sbjct: 2992 catgctggaatcaagggcacaagccgtcccgctcattaccacgtcctgtgggatgaaaac 3051
Query: 85 aatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttatgcccgg 144
|| |||||||| || | |||| || || || |||||||| || ||||||||||| ||
Sbjct: 3052 aacttcacagctgatgcgttgcagaccctcaccaacaacctctgttacacttatgcgagg 3111
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
|||||||| || || ||| |||| || || |||||||| || || ||||| || ||| |
Sbjct: 3112 tgcacacgatccgtatctattgttccaccagcatactatgctcatctggcggcgttcaga 3171
Query: 205 gcgcggttctacatgga 221
|| || |||||||||||
Sbjct: 3172 gcccgtttctacatgga 3188
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full
insert sequence
Length = 1312
Score = 81.8 bits (41), Expect = 4e-013
Identities = 158/197 (80%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
|||||||||||| |||| ||||| | |||||||| ||||| ||||| |||||||| |||
Sbjct: 678 catgctggaatcaagggcacaagccgtcccgctcattaccacgtcctgtgggatgaaaac 737
Query: 85 aatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttatgcccgg 144
|| |||||||| || | |||| || || || |||||||| || ||||||||||| ||
Sbjct: 738 aacttcacagctgatgcgttgcagaccctcaccaacaacctctgttacacttatgcgagg 797
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
|||||||| || || ||| |||| || || |||||||| || || ||||| || ||| |
Sbjct: 798 tgcacacgatccgtatctattgttccaccagcatactatgctcatctggcggcgttcaga 857
Query: 205 gcgcggttctacatgga 221
|| || |||||||||||
Sbjct: 858 gcccgtttctacatgga 874
>gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14L01 5', mRNA sequence
Length = 338
Score = 79.8 bits (40), Expect = 2e-012
Identities = 145/180 (80%)
Strand = Plus / Plus
Query: 50 ggcccgctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaa 109
|||| ||||| || ||||| || |||||||||||||| || || ||| |||| ||||||
Sbjct: 33 ggcctgctcattatcatgttctgtgggatgagaacaaatttactgcacacgagttgcaaa 92
Query: 110 cactgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtcc 169
| || || |||||| | |||||||| ||||| ||||||| ||||| || || |||| |
Sbjct: 93 ccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgc 152
Query: 170 ctcctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||| ||||| || || |||||||| ||||| || || || |||||||| |||||||
Sbjct: 153 ctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagaga 212
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full
insert sequence
Length = 3432
Score = 77.8 bits (39), Expect = 6e-012
Identities = 180/227 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||||||| ||||| |||||||| || |||| || ||| | || |||||
Sbjct: 2799 gagtttgacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcat 2858
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| |||||| | |||||||| ||||| |||||||| || | | |||| | || || |||
Sbjct: 2859 tatcatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagattcttaccaac 2918
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||| ||||| ||||||| ||||| || || |||| || ||||| ||
Sbjct: 2919 aacctttgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttat 2978
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || || ||||| || ||||| || || ||||| |||||||||||
Sbjct: 2979 tatgctcatctggctgccttccgtgctcgtttctatatggaaccaga 3025
Score = 44.1 bits (22), Expect = 0.091
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 283 aagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactgctga 336
||||| || |||||| ||||||| | ||||| ||||| |||||||||||||||
Sbjct: 3126 aagccacttcctgctctgaaggatagtgtgaagagggtcatgttctactgctga 3179
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3430
Score = 77.8 bits (39), Expect = 6e-012
Identities = 180/227 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||||||| ||||| |||||||| || |||| || ||| | || |||||
Sbjct: 2799 gagtttgacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcat 2858
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| |||||| | |||||||| ||||| |||||||| || | | |||| | || || |||
Sbjct: 2859 tatcatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagattcttaccaac 2918
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||| ||||| ||||||| ||||| || || |||| || ||||| ||
Sbjct: 2919 aacctttgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttat 2978
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || || ||||| || ||||| || || ||||| |||||||||||
Sbjct: 2979 tatgctcatctggctgccttccgtgctcgtttctatatggaaccaga 3025
Score = 44.1 bits (22), Expect = 0.091
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 283 aagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactgctga 336
||||| || |||||| ||||||| | ||||| ||||| |||||||||||||||
Sbjct: 3126 aagccacttcctgctctgaaggatagtgtgaagagggtcatgttctactgctga 3179
>dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075D23, full
insert sequence
Length = 3414
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 160 tctgttgtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 3052 tctgttgtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 3108
Score = 46.1 bits (23), Expect = 0.023
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaag 47
||||| || |||||||| || || ||||| |||||||||||||||||
Sbjct: 2893 gagttcgacttctacctgtgcagccatgccggaatccagggaacaag 2939
>dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full
insert sequence
Length = 3644
Score = 73.8 bits (37), Expect = 1e-010
Identities = 157/197 (79%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
|||||||||||| |||| ||||| |||||||| ||||| ||||| |||||||| |||
Sbjct: 3011 catgctggaatcaagggcacaagccatcccgctcattaccacgtcctgtgggatgaaaac 3070
Query: 85 aatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttatgcccgg 144
|| |||||||| || | |||| || || || |||||||| || ||||||||||| ||
Sbjct: 3071 aacttcacagctgatgcgttgcagaccctcaccaacaacctctgttacacttatgcgagg 3130
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
|||||||| || || ||| |||| || || |||||||| || || ||||| || ||| |
Sbjct: 3131 tgcacacgatccgtatctattgttccaccagcatactatgctcatctggcggcgttcaga 3190
Query: 205 gcgcggttctacatgga 221
|| || |||||||||||
Sbjct: 3191 gcccgtttctacatgga 3207
>ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3414
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 160 tctgttgtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 3052 tctgttgtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 3108
Score = 46.1 bits (23), Expect = 0.023
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaag 47
||||| || |||||||| || || ||||| |||||||||||||||||
Sbjct: 2893 gagttcgacttctacctgtgcagccatgccggaatccagggaacaag 2939
>gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63231_1A, mRNA sequence
Length = 334
Score = 71.9 bits (36), Expect = 4e-010
Identities = 179/227 (78%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||||||| ||||| |||||||| || |||| || ||| | || |||||
Sbjct: 55 gagtttgacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcat 114
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| |||||| | |||||||| ||||| |||||||| || | | |||| | || || |||
Sbjct: 115 tatcatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagattcttaccaac 174
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||| ||||| ||||||| ||||| || || |||| || || || ||
Sbjct: 175 aacctttgctacacctatgcaaggtgcactcgctctgtatcaattgttccaccngcttat 234
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || || ||||| || ||||| || || ||||| |||||||||||
Sbjct: 235 tatgctcatctggctgccttccgtgctcgtttctatatggaaccaga 281
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1
homologous protein, complete cds
Length = 3306
Score = 69.9 bits (35), Expect = 2e-009
Identities = 179/227 (78%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||||||| ||||| |||||||| || |||| || ||| | || |||||
Sbjct: 2650 gagtttgacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcat 2709
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| |||||| | ||| |||| ||||| |||||||| || | | |||| | || || |||
Sbjct: 2710 tatcatgtcttgtggaatgaaaacaacttcacagctgatgcattgcagattcttaccaac 2769
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|||||||||||||| ||||| ||||||| ||||| || || |||| || ||||| ||
Sbjct: 2770 aacctttgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttat 2829
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || || ||||| || ||||| || || ||||| |||||||||||
Sbjct: 2830 tatgctcatctggctgccttccgtgctcgtttctatatggaaccaga 2876
Score = 44.1 bits (22), Expect = 0.091
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 283 aagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactgctga 336
||||| || |||||| ||||||| | ||||| ||||| |||||||||||||||
Sbjct: 2977 aagccacttcctgctctgaaggatagtgtgaagagggtcatgttctactgctga 3030
>gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60443_2Z, mRNA sequence
Length = 714
Score = 67.9 bits (34), Expect = 6e-009
Identities = 158/198 (79%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtag-gcccgctcactaccatgtcctctgggatgagaa 83
|||||||||||| |||| ||||| | |||||||| ||||| ||||| |||||||| ||
Sbjct: 51 catgctggaatcaagggcacaagccgtccccgctcattaccacgtcctgtgggatgaaaa 110
Query: 84 caatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttatgcccg 143
||| |||||||| || | |||| || || || |||||||| || ||||||||||| |
Sbjct: 111 caacttcacagctgatgcgttgcagaccctcaccaacaacctctgttacacttatgcgag 170
Query: 144 gtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccg 203
||||||||| || || ||| |||| || || |||||||| || || ||||| || ||| |
Sbjct: 171 gtgcacacgatccgtatctattgttccaccagcatactatgctcatctggcggcgttcag 230
Query: 204 ggcgcggttctacatgga 221
|| || |||||||||||
Sbjct: 231 agcccgtttctacatgga 248
>dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06503T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2724, genomic survey sequence
Length = 316
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagg 40
||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 153 gagtttgatttctacctctgtagccatgctggaattcagg 114
>ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3579
Score = 63.9 bits (32), Expect = 1e-007
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 8 atttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatg 67
|||||||||| ||||| |||||||| || ||||| || || ||||| |||| |||||||
Sbjct: 2096 atttctacctgtgtagccatgctggcatacagggtactagcaggccaactcattaccatg 2155
Query: 68 tcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaaccttt 127
|||| | ||||||||| |||| ||||| || ||| | || || ||||| ||||| ||||
Sbjct: 2156 tcctttatgatgagaaccattttacagctgatgaacttcagaccctgaccaacaatcttt 2215
Query: 128 gcta 131
||||
Sbjct: 2216 gcta 2219
>dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21104T, 3'
flanking sequence of Tos17 insertion in rice strain
NF3739, genomic survey sequence
Length = 733
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaat 35
||||||||||||||||||||||| |||||||||||
Sbjct: 644 gagtttgatttctacctctgtagccatgctggaat 678
>dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBb0002L09
Length = 146343
Score = 61.9 bits (31), Expect = 4e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 9999 gtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 9949
>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBb0084L07
Length = 127992
Score = 61.9 bits (31), Expect = 4e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 53396 gtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 53346
>gb|AACV01015319.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015319, whole
genome shotgun sequence
Length = 38646
Score = 61.9 bits (31), Expect = 4e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 30086 gtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 30036
>ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3177
Score = 61.9 bits (31), Expect = 4e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||| ||||||||||| ||||| |||||||| || ||||| || || ||||| ||||
Sbjct: 2827 gagttcgatttctacctgtgtagccatgctggcatacagggtactagcaggccaactcat 2886
Query: 61 taccatgtcctctgggatgagaacaatttcacagc 95
||||||||||| | ||||||||| |||| |||||
Sbjct: 2887 taccatgtcctttacgatgagaaccattttacagc 2921
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 61.9 bits (31), Expect = 4e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 4691558 gtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 4691508
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 61.9 bits (31), Expect = 4e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctac 216
|||||||| || |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 1816283 gtccctccagcctactacgctcacctggcagcattccgggcgaggtactac 1816233
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 778,638
Number of Sequences: 438736
Number of extensions: 778638
Number of successful extensions: 4290
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3969
Number of HSP's gapped (non-prelim): 294
length of query: 635
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 614
effective length of database: 2,791,206,460
effective search space: 1713800766440
effective search space used: 1713800766440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)