BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (j... 343 8e-092
gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda ph... 343 8e-092
dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA... 343 8e-092
gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (ja... 337 5e-090
gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (j... 337 5e-090
gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda ph... 335 2e-089
gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing... 329 1e-087
gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing ... 321 3e-085
gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (ja... 315 2e-083
gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing... 315 2e-083
gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing ... 313 7e-083
gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare imm... 299 1e-078
dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA... 220 7e-055
ref|NM_189410.1| Oryza sativa (japonica cultivar-group), p... 208 3e-051
gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Ni... 186 1e-044
gb|AC104271.2| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) c... 184 4e-044
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 184 4e-044
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 184 4e-044
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 161 6e-037
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 161 6e-037
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 161 6e-037
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 161 6e-037
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid ... 101 5e-019
gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid ... 88 7e-015
gb|AU162290.1|AU162290 AU162290 Rice immature leaf includin... 62 4e-007
>gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52661, mRNA sequence
Length = 671
Score = 343 bits (173), Expect = 8e-092
Identities = 263/293 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 151 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 210
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 211 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 270
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 271 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 330
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 331 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 390
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 391 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 443
>gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 500
Score = 343 bits (173), Expect = 8e-092
Identities = 263/293 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 148 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 207
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 208 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 267
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 268 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 327
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 328 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 387
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 440
>dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full
insert sequence
Length = 694
Score = 343 bits (173), Expect = 8e-092
Identities = 263/293 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 147 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 206
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 207 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 266
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 267 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 326
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 327 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 386
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 439
>gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52661_1A, mRNA sequence
Length = 468
Score = 337 bits (170), Expect = 5e-090
Identities = 262/293 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || || || ||||||||||| |||||
Sbjct: 146 aaggaggaggaggaattcagtacggggccgctgtccgtnctgatgatgagcgtgaagaac 205
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 206 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 265
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 266 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 325
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 326 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 385
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 386 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 438
>gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53504, mRNA sequence
Length = 660
Score = 337 bits (170), Expect = 5e-090
Identities = 262/293 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 139 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 198
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 199 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 258
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 259 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtncca 318
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 319 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 378
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 431
>gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 488
Score = 335 bits (169), Expect = 2e-089
Identities = 235/257 (91%)
Strand = Plus / Minus
Query: 150 gtgctcatgatgagcgtcaagaataatacccaggttcttatcaactgccggaacaacaag 209
||||| ||||||||||| ||||| || |||||||| |||||||| |||||||||||||||
Sbjct: 486 gtgctgatgatgagcgtgaagaacaacacccaggtgcttatcaattgccggaacaacaag 427
Query: 210 aagttgcttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgtt 269
|||||||||||||| ||| | || || ||||| || |||||||||||||||||||| |||
Sbjct: 426 aagttgcttggtcgtgtgagggcatttgatcgccattgcaacatggttcttgagaatgtt 367
Query: 270 agggagatgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtg 329
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 366 agggagatgtggactgaggtaccaaagactggtaaaggcaagaagaaggctcttccagtg 307
Query: 330 aacaaggacaggttcataagcaagatgttcctccgtggggattcggtcatcattgtcctc 389
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 306 aacaaggacaggttcattagcaagatgttcctacgtggggattcggtcatcattgtgctc 247
Query: 390 aggaacccgaaatgagt 406
|||||||||||||||||
Sbjct: 246 aggaacccgaaatgagt 230
>gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 529
Score = 329 bits (166), Expect = 1e-087
Identities = 263/294 (89%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 147 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 206
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 207 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 266
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 267 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 326
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 327 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 386
Query: 354 atgttcctccgt-ggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 atgttcctacgtgggggattcggtcatcattgtgctcaggaacccgaaatgagt 440
>gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 530
Score = 321 bits (162), Expect = 3e-085
Identities = 262/294 (89%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 149 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 208
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| |||||||||| |||||||||||||||||| ||| | ||
Sbjct: 209 aacacccaggtgcttatcaattgccggaacagcaagaagttgcttggtcgtgtgagggca 268
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 269 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 328
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 329 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 388
Query: 354 atgttcctccgtggg-gattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 389 atgttcctacgtgggngattcggtcatcattgtgctcaggaacccgaaatgagt 442
>gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53504_1A, mRNA sequence
Length = 458
Score = 315 bits (159), Expect = 2e-083
Identities = 263/295 (89%), Gaps = 2/295 (0%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 134 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 193
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 194 aacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggca 253
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 254 tttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacca 313
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 314 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 373
Query: 354 atgttcctccgt-ggggattcggtcatcattg-tcctcaggaacccgaaatgagt 406
|||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 374 atgttcctacgtgggggattcggtcatcattgttgctcaggaacccgaaatgagt 428
>gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 550
Score = 315 bits (159), Expect = 2e-083
Identities = 261/294 (88%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 522 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 463
Query: 174 aatacccag-gttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagc 232
|| ||||| | |||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 462 aacacccanngggcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggc 403
Query: 233 cttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtacc 292
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 402 atttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacc 343
Query: 293 gaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaa 352
||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 342 aaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaa 283
Query: 353 gatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 282 gatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 229
>gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 536
Score = 313 bits (158), Expect = 7e-083
Identities = 261/294 (88%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 528 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 469
Query: 174 aataccc-aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagc 232
|| |||| |||| |||||||| |||||||||| |||||||||||||||||| ||| | ||
Sbjct: 468 aacaccccaggtgcttatcaattgccggaacagcaagaagttgcttggtcgtgtgagggc 409
Query: 233 cttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtacc 292
|| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 408 atttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtacc 349
Query: 293 gaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaa 352
||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 348 aaagactggtaaaggcaagaagaaggctcttccattgaacaaggacaggttcattagcaa 289
Query: 353 gatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 288 gatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 235
>gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50441_2Z, mRNA
sequence
Length = 453
Score = 299 bits (151), Expect = 1e-078
Identities = 203/221 (91%)
Strand = Plus / Plus
Query: 186 cttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcac 245
|||||||| ||||||||||||||||| ||||||||||| ||| | || || ||||| ||
Sbjct: 5 cttatcaattgccggaacaacaagaanttgcttggtcgtgtgagggcatttgatcgccat 64
Query: 246 tgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaa 305
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 65 tgcaacatggttcttgagaatgttagggagatgtggactgaggtaccaaagactggtaaa 124
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||
Sbjct: 125 ggcaagaagaaggctcttccngtgaacaaggacaggttcattagcaagatgttcctacgt 184
Query: 366 ggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 185 ggggattcggtcatcattgtgctcaggaacccgaaatgagt 225
>dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B09, full
insert sequence
Length = 360
Score = 220 bits (111), Expect = 7e-055
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 260 tgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggc 319
|||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1 tgagaatgttagggagatgtggactgaggtaccaaagactggtaaaggcaagaagaaggc 60
Query: 320 tctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggattcggtcat 379
||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 61 tcttccagtgaacaaggacaggttcattagcaagatgttcctacgtggggattcggtcat 120
Query: 380 cattgtcctcaggaacccgaaatgagt 406
|||||| ||||||||||||||||||||
Sbjct: 121 cattgtgctcaggaacccgaaatgagt 147
>ref|NM_189410.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 153
Score = 208 bits (105), Expect = 3e-051
Identities = 141/153 (92%)
Strand = Plus / Plus
Query: 252 atggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaag 311
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1 atggttcttgagaatgtcagggagatgtggaccgaggtaccaaagactggtaaaggcaag 60
Query: 312 aagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggat 371
||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 61 aagaaggctcttccagtgaacaaggacaggttcatcagcaagatgttcctacgtggggac 120
Query: 372 tcggtcatcattgtcctcaggaacccgaaatga 404
|||||||||||||| |||| ||||||||||||
Sbjct: 121 tcggtcatcattgtgctcaaaaacccgaaatga 153
>gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21985_1A, mRNA sequence
Length = 432
Score = 186 bits (94), Expect = 1e-044
Identities = 115/122 (94%)
Strand = Plus / Plus
Query: 285 gaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttc 344
|||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 64 gaggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttc 123
Query: 345 ataagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 124 attagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatga 183
Query: 405 gt 406
||
Sbjct: 184 gt 185
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
complete sequence
Length = 117724
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 45390 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 45331
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 45330 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 45271
Query: 406 t 406
|
Sbjct: 45270 t 45270
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 45581 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 45522
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 45521 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 45471
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 47260 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 47201
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 47200 aacacccaggtt 47189
>gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011724, whole
genome shotgun sequence
Length = 16500
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 14354 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 14295
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14294 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 14235
Query: 406 t 406
|
Sbjct: 14234 t 14234
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 14545 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 14486
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 14485 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 14435
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 16224 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 16165
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 16164 aacacccaggtt 16153
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1849759 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 1849700
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1849699 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 1849640
Query: 406 t 406
|
Sbjct: 1849639 t 1849639
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 1849950 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 1849891
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1849890 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 1849840
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 1851629 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 1851570
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 1851569 aacacccaggtt 1851558
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1820692 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 1820633
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1820632 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 1820573
Query: 406 t 406
|
Sbjct: 1820572 t 1820572
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 1820883 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 1820824
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1820823 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 1820773
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 1822562 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 1822503
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 1822502 aacacccaggtt 1822491
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 14086092 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 14086033
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14086032 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 14085973
Query: 406 t 406
|
Sbjct: 14085972 t 14085972
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 14086283 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 14086224
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 14086223 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 14086173
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 14087962 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 14087903
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 14087902 aacacccaggtt 14087891
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 184 bits (93), Expect = 4e-044
Identities = 114/121 (94%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 14316604 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 14316545
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14316544 ttagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgag 14316485
Query: 406 t 406
|
Sbjct: 14316484 t 14316484
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
Sbjct: 14316795 aggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatc 14316736
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 14316735 gccattgcaacatggttcttgagaatgttagggagatgtggactgaggtac 14316685
Score = 48.1 bits (24), Expect = 0.006
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 14318474 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 14318415
Query: 174 aatacccaggtt 185
|| |||||||||
Sbjct: 14318414 aacacccaggtt 14318403
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 45864 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 45805
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 45804 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 45745
Query: 406 t 406
|
Sbjct: 45744 t 45744
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 46061 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 46002
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 46001 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 45951
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 42712002 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 42711943
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 42711942 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 42711883
Query: 406 t 406
|
Sbjct: 42711882 t 42711882
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 42712199 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 42712140
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 42712139 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 42712089
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2340296 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 2340237
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 2340236 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 2340177
Query: 406 t 406
|
Sbjct: 2340176 t 2340176
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 2340493 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 2340434
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 2340433 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 2340383
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 152215 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 152156
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 152155 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 152096
Query: 406 t 406
|
Sbjct: 152095 t 152095
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 152412 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 152353
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 152352 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 152302
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 16819095 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 16819036
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 16819035 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 16818976
Query: 406 t 406
|
Sbjct: 16818975 t 16818975
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 16819292 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 16819233
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 16819232 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 16819182
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 42020816 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 42020757
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 42020756 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 42020697
Query: 406 t 406
|
Sbjct: 42020696 t 42020696
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 42021013 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 42020954
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 42020953 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 42020903
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 161 bits (81), Expect = 6e-037
Identities = 111/121 (91%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 42631332 aggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttca 42631273
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| |||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 42631272 tcagcaagatgttcctacgtggggactcggtcatcattgtgctcaaaaacccgaaatgag 42631213
Query: 406 t 406
|
Sbjct: 42631212 t 42631212
Score = 101 bits (51), Expect = 5e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||| |||||||| |||| ||||||||||||||| || ||||| ||| | || || |||
Sbjct: 42631529 aggtgcttatcaattgccagaacaacaagaagttactaggtcgtgtgagggcatttgata 42631470
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtac 291
| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 42631469 gccattgcaacatggttcttgagaatgtcagggagatgtggaccgaggtac 42631419
>gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 287
Score = 101 bits (51), Expect = 5e-019
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 348 agcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 agcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaaatgagt 59
>gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 288
Score = 87.7 bits (44), Expect = 7e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 348 agcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccga 399
|||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 288 agcaagatgttcctacgtggggattcggtcatcattgtgctcaggaacccga 237
>gb|AU162290.1|AU162290 AU162290 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50441, mRNA sequence
Length = 288
Score = 61.9 bits (31), Expect = 4e-007
Identities = 87/103 (84%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||| ||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 137 aaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaagaac 196
Query: 174 aatacccaggttcttatcaa-ctgcc-ggaacaacaagaagtt 214
|| ||||||||| ||||||| |||| ||||||||||||||||
Sbjct: 197 aacacccaggttgttatcaatttgccgggaacaacaagaagtt 239
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,478,994
Number of Sequences: 438736
Number of extensions: 1478994
Number of successful extensions: 12186
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11991
Number of HSP's gapped (non-prelim): 188
length of query: 675
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 654
effective length of database: 2,791,206,460
effective search space: 1825449024840
effective search space used: 1825449024840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)