BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.1
(1442 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066644.1| Oryza sativa (japonica cultivar-group) cDNA... 807 0.0
dbj|AK105065.1| Oryza sativa (japonica cultivar-group) cDNA... 601 e-169
dbj|AK066428.1| Oryza sativa (japonica cultivar-group) cDNA... 367 1e-098
ref|XM_479626.1| Oryza sativa (japonica cultivar-group), mRNA 367 1e-098
gb|CF303856.1|CF303856 ABF1--03-G11.g1 ABF3-overexpressing ... 216 3e-053
gb|AC134232.2| Oryza sativa (japonica cultivar-group) chrom... 200 2e-048
gb|AACV01006370.1| Oryza sativa (japonica cultivar-group) c... 200 2e-048
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 200 2e-048
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 200 2e-048
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 200 2e-048
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 200 2e-048
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 200 2e-048
gb|AQ864061.1|AQ864061 nbeb0022M22f CUGI Rice BAC Library (... 147 2e-032
gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbar... 147 2e-032
dbj|AP003831.2| Oryza sativa (japonica cultivar-group) chro... 109 4e-021
dbj|AP005199.3| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|AACV01017072.1| Oryza sativa (japonica cultivar-group) c... 109 4e-021
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 109 4e-021
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|AACV01012801.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
>dbj|AK066644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071M17, full
insert sequence
Length = 1864
Score = 807 bits (407), Expect = 0.0
Identities = 754/869 (86%), Gaps = 3/869 (0%)
Strand = Plus / Plus
Query: 186 ctcaaggttgcttaccagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcg 245
||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||||
Sbjct: 465 ctcaaggttgcctaccagggttgccctggagcgtacagcgaggcggcagcgaagaaggcg 524
Query: 246 tacccgaattgtgagactgtgccctgtgagcacttcgacactgcatttcaggctgttcaa 305
||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 525 tacccaaattgccagactgtgccctgtgagcacttcgatactgcattcaaggctgttgaa 584
Query: 306 aactgggtagctgatagggccgtactgccacttgagaattcattgggaggtagcatacat 365
|||||| ||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct: 585 aactggttagctgacagggcagtattgccacttgagaattcattgggtggtagcatacat 644
Query: 366 aggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagttcgccttgcg 425
||||| | ||| ||||| ||||| ||||| ||||||||||| ||||| || || |||||
Sbjct: 645 aggaactttgaccttttacttcgtcatagattgcacattgttggagaggtccgtcttgct 704
Query: 426 gttcgccattgcttattagccaatcctggcgtgaagattgaaaacctgaaaagtgctatg 485
||||| |||||| | ||||||||||| || || |||||||||||| |||||||||| |||
Sbjct: 705 gttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttgaaaagtgcaatg 764
Query: 486 agtcatccccaggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcat 545
|| ||||||||||||||||| ||||||||||||||||| ||| | |||||||| |||
Sbjct: 765 agccatccccaggctcttgcacaatgtgagcacacattgacagagttcggaattgaacat 824
Query: 546 agagaagctgttgacgacactgctggtgcagcaaagattgttgcagaacatatgctccag 605
|||||||||||||| || ||||||||||||||||||| ||| |||||||| | |||||
Sbjct: 825 agagaagctgttgatgatactgctggtgcagcaaagactgtagcagaacaaaatctccaa 884
Query: 606 gacactggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgct 665
|| || ||||| ||||| ||||| |||| ||| |||| |||||| || |||||||||||
Sbjct: 885 gataccggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgct 944
Query: 666 gagaatattcaggatgacaaagataatgtcacccgttttatgatgctagctcgagaaccc 725
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 945 gaaaatattcaggatgacaaagataatgttacccgttttatgatgctggctcgagaacca 1004
Query: 726 atcatacctcgcactgataaaccatttaagacaagcatagtcttttcactagaagaagga 785
|| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 1005 attatacctcgcaccgataaaccattcaagactagcatagtcttttcacttgaagaagga 1064
Query: 786 cctggacagctctttaaggcacttgctgtatttgcactgagggacatcaacctcacaaag 845
||||| || |||||||||||||||| || ||||| |||||||| |||||||| || |||
Sbjct: 1065 cctgggcaactctttaaggcacttggggtgtttgcgctgagggaaatcaacctaaccaag 1124
Query: 846 attgaaagtcgtccacataaggaaaggcctcttcgggtatctgatga---ctgttcctcg 902
|| ||||| || ||||| ||| ||||||||||||| || |||| || || |||| |
Sbjct: 1125 atagaaagccgcccacacaagaaaaggcctcttcgtataactgacgacagcttttccaca 1184
Query: 903 ctcttaaagaactttgattaccttttttatgttgaccttgaagcatcaatggctgatcca 962
| | |||| | ||||| ||||| || ||| | |||||||| ||||||||||||||||||
Sbjct: 1185 ccgtcaaagcagtttgactacctcttctatatggaccttgaggcatcaatggctgatcca 1244
Query: 963 aagactcagaatgctcttggaaatctgaaggagtttgcaacatttttaagagttcttgga 1022
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct: 1245 aaaactcagaatgctcttggaaatttgaaggagtttgcaacctttttaagagtccttgga 1304
Query: 1023 agctatcctacagatgtgaatgaacctta 1051
||||||||||||||||| |||||| ||||
Sbjct: 1305 agctatcctacagatgtaaatgaagctta 1333
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 110 ccccgccgcccgcgatccccactggctgcctcgtccgctcac 151
||||||| |||| |||| ||||||||||||||| || |||||
Sbjct: 389 ccccgcctcccgtgatctccactggctgcctcgccctctcac 430
>dbj|AK105065.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F05, full
insert sequence
Length = 1267
Score = 601 bits (303), Expect = e-169
Identities = 584/677 (86%), Gaps = 3/677 (0%)
Strand = Plus / Plus
Query: 378 cttttgcttcggcatagtttgcacattgtaggagaagttcgccttgcggttcgccattgc 437
||||| ||||| ||||| ||||||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 9 cttttacttcgtcatagattgcacattgttggagaggtccgtcttgctgttcgtcattgc 68
Query: 438 ttattagccaatcctggcgtgaagattgaaaacctgaaaagtgctatgagtcatccccag 497
| ||||||||||| || || |||||||||||| |||||||||| ||||| |||||||||
Sbjct: 69 ctgttagccaatcccggtgtcaagattgaaaacttgaaaagtgcaatgagccatccccag 128
Query: 498 gctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagctgtt 557
|||||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||
Sbjct: 129 gctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagctgtt 188
Query: 558 gacgacactgctggtgcagcaaagattgttgcagaacatatgctccaggacactggtgct 617
|| || ||||||||||||||||||| ||| |||||||| | ||||| || || |||||
Sbjct: 189 gatgatactgctggtgcagcaaagactgtagcagaacaaaatctccaagataccggtgcg 248
Query: 618 attgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaatattcag 677
||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||||||||
Sbjct: 249 attgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaatattcag 308
Query: 678 gatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctcgc 737
||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 309 gatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctcgc 368
Query: 738 actgataaaccatttaagacaagcatagtcttttcactagaagaaggacctggacagctc 797
|| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 369 accgataaaccattcaagactagcatagtcttttcacttgaagaaggacctgggcaactc 428
Query: 798 tttaaggcacttgctgtatttgcactgagggacatcaacctcacaaagattgaaagtcgt 857
||||||||||||| || |||||||||||||| |||||||| || ||||| ||||| ||
Sbjct: 429 tttaaggcacttggggtgtttgcactgagggaaatcaacctaaccaagatagaaagccgc 488
Query: 858 ccacataaggaaaggcctcttcgggtatctgatga---ctgttcctcgctcttaaagaac 914
||||| ||| ||||||||||||| || |||| || || |||| | | | |||| |
Sbjct: 489 ccacacaagaaaaggcctcttcgtataactgacgacagcttttccacaccgtcaaagcag 548
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 549 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 608
Query: 975 gctcttggaaatctgaaggagtttgcaacatttttaagagttcttggaagctatcctaca 1034
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 609 gctcttggaaatttgaaggagtttgcaacctttttaagagtccttggaagctatcctaca 668
Query: 1035 gatgtgaatgaacctta 1051
||||| |||||| ||||
Sbjct: 669 gatgtaaatgaagctta 685
>dbj|AK066428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059A18, full
insert sequence
Length = 1507
Score = 367 bits (185), Expect = 1e-098
Identities = 527/641 (82%)
Strand = Plus / Plus
Query: 237 aagaaggcgtacccgaattgtgagactgtgccctgtgagcacttcgacactgcatttcag 296
|||||||||||||||| ||| | || |||||||| || ||||||| || || ||||||
Sbjct: 387 aagaaggcgtacccgagttgccacaccgtgccctgcgaatacttcgagaccgcctttcag 446
Query: 297 gctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattgggaggt 356
||||| |||| ||||| ||||| | || || ||||||||||||||||| ||||| |||
Sbjct: 447 gctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttgggtggt 506
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagtt 416
||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| || || ||
Sbjct: 507 agcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggtgaggtg 566
Query: 417 cgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctgaaa 476
|||||||| |||||||||||||| ||||| |||| ||| |||||||| |||| ||| |
Sbjct: 567 cgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaatttgaga 626
Query: 477 agtgctatgagtcatccccaggctcttgcgcaatgtgagcacacattaacatcactagga 536
||||| ||||| ||||| || |||||||| || ||||| || ||| | ||| ||||
Sbjct: 627 agtgccatgagccatcctcaagctcttgcacagtgtgaacaaacactgacaaagttaggc 686
Query: 537 attgagcatagagaagctgttgacgacactgctggtgcagcaaagattgttgcagaacat 596
|| ||||||||||||||||||||||| || || |||||||||||| || ||||||||||
Sbjct: 687 atcgagcatagagaagctgttgacgatacagcaggtgcagcaaagcttattgcagaacaa 746
Query: 597 atgctccaggacactggtgctattgctagttcgttggcggctaaactgtatggattggat 656
| ||||||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||
Sbjct: 747 aagctccaggacactggagcagttgctagttcattggcagctcaactttatggactggat 806
Query: 657 gttcttgctgagaatattcaggatgacaaagataatgtcacccgttttatgatgctagct 716
||||||| || |||||||||||||||| |||||||| || || ||||||||||| |||
Sbjct: 807 attcttgcagaaaatattcaggatgacaccgataatgtaacacgctttatgatgctggct 866
Query: 717 cgagaacccatcatacctcgcactgataaaccatttaagacaagcatagtcttttcacta 776
|| |||||||| || ||||| |||||||| ||||| ||||| |||||||||||||| |
Sbjct: 867 cgggaacccattattcctcgtactgataagccattcaagactagcatagtcttttctttg 926
Query: 777 gaagaaggacctggacagctctttaaggcacttgctgtatttgcactgagggacatcaac 836
|||||||| ||||| || || |||||||| || || || ||||||||||| | || |||
Sbjct: 927 gaagaagggcctgggcaactatttaaggcgctggcagtgtttgcactgagaaaaattaac 986
Query: 837 ctcacaaagattgaaagtcgtccacataaggaaaggcctct 877
||||| ||||| ||||| |||||||| ||| ||| ||||||
Sbjct: 987 ctcaccaagatggaaagccgtccacacaagaaaaagcctct 1027
Score = 85.7 bits (43), Expect = 6e-014
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctctt 980
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 1074 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctctg 1133
Query: 981 ggaaatctgaaggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
| ||| | |||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 1134 gcaaacttaaaggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 1192
>ref|XM_479626.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1507
Score = 367 bits (185), Expect = 1e-098
Identities = 527/641 (82%)
Strand = Plus / Plus
Query: 237 aagaaggcgtacccgaattgtgagactgtgccctgtgagcacttcgacactgcatttcag 296
|||||||||||||||| ||| | || |||||||| || ||||||| || || ||||||
Sbjct: 387 aagaaggcgtacccgagttgccacaccgtgccctgcgaatacttcgagaccgcctttcag 446
Query: 297 gctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattgggaggt 356
||||| |||| ||||| ||||| | || || ||||||||||||||||| ||||| |||
Sbjct: 447 gctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttgggtggt 506
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagtt 416
||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| || || ||
Sbjct: 507 agcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggtgaggtg 566
Query: 417 cgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctgaaa 476
|||||||| |||||||||||||| ||||| |||| ||| |||||||| |||| ||| |
Sbjct: 567 cgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaatttgaga 626
Query: 477 agtgctatgagtcatccccaggctcttgcgcaatgtgagcacacattaacatcactagga 536
||||| ||||| ||||| || |||||||| || ||||| || ||| | ||| ||||
Sbjct: 627 agtgccatgagccatcctcaagctcttgcacagtgtgaacaaacactgacaaagttaggc 686
Query: 537 attgagcatagagaagctgttgacgacactgctggtgcagcaaagattgttgcagaacat 596
|| ||||||||||||||||||||||| || || |||||||||||| || ||||||||||
Sbjct: 687 atcgagcatagagaagctgttgacgatacagcaggtgcagcaaagcttattgcagaacaa 746
Query: 597 atgctccaggacactggtgctattgctagttcgttggcggctaaactgtatggattggat 656
| ||||||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||
Sbjct: 747 aagctccaggacactggagcagttgctagttcattggcagctcaactttatggactggat 806
Query: 657 gttcttgctgagaatattcaggatgacaaagataatgtcacccgttttatgatgctagct 716
||||||| || |||||||||||||||| |||||||| || || ||||||||||| |||
Sbjct: 807 attcttgcagaaaatattcaggatgacaccgataatgtaacacgctttatgatgctggct 866
Query: 717 cgagaacccatcatacctcgcactgataaaccatttaagacaagcatagtcttttcacta 776
|| |||||||| || ||||| |||||||| ||||| ||||| |||||||||||||| |
Sbjct: 867 cgggaacccattattcctcgtactgataagccattcaagactagcatagtcttttctttg 926
Query: 777 gaagaaggacctggacagctctttaaggcacttgctgtatttgcactgagggacatcaac 836
|||||||| ||||| || || |||||||| || || || ||||||||||| | || |||
Sbjct: 927 gaagaagggcctgggcaactatttaaggcgctggcagtgtttgcactgagaaaaattaac 986
Query: 837 ctcacaaagattgaaagtcgtccacataaggaaaggcctct 877
||||| ||||| ||||| |||||||| ||| ||| ||||||
Sbjct: 987 ctcaccaagatggaaagccgtccacacaagaaaaagcctct 1027
Score = 85.7 bits (43), Expect = 6e-014
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctctt 980
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 1074 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctctg 1133
Query: 981 ggaaatctgaaggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
| ||| | |||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 1134 gcaaacttaaaggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 1192
>gb|CF303856.1|CF303856 ABF1--03-G11.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-G11, mRNA sequence
Length = 596
Score = 216 bits (109), Expect = 3e-053
Identities = 202/233 (86%)
Strand = Plus / Plus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaagattgttgcagaacatatg 599
||||||||||||||||||||||| || || |||||||||||| || |||||||||| | |
Sbjct: 360 gagcatagagaagctgttgacgatacagcaggtgcagcaaagcttattgcagaacaaaag 419
Query: 600 ctccaggacactggtgctattgctagttcgttggcggctaaactgtatggattggatgtt 659
|||||||||||||| || |||||||||| ||||| ||| |||| |||||| ||||| ||
Sbjct: 420 ctccaggacactggagcagttgctagttcattggcagctcaactttatggactggatatt 479
Query: 660 cttgctgagaatattcaggatgacaaagataatgtcacccgttttatgatgctagctcga 719
||||| || |||||||||||||||| |||||||| || || ||||||||||| |||||
Sbjct: 480 cttgcagaaaatattcaggatgacaccgataatgtaacacgctttatgatgctggctcgg 539
Query: 720 gaacccatcatacctcgcactgataaaccatttaagacaagcatagtcttttc 772
|||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 540 gaacccattattcctcgtactgataagccattcaagactagcatagtcttttc 592
Score = 105 bits (53), Expect = 7e-020
Identities = 164/201 (81%)
Strand = Plus / Plus
Query: 293 tcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggg 352
||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||||
Sbjct: 9 tcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttggg 68
Query: 353 aggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggaga 412
|||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| || ||
Sbjct: 69 tggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggtga 128
Query: 413 agttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacct 472
|| |||||||| |||||||||||||| ||||| |||| ||| |||||||| |||| |
Sbjct: 129 ggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaattt 188
Query: 473 gaaaagtgctatgagtcatcc 493
|| |||||| ||||| |||||
Sbjct: 189 gagaagtgccatgagccatcc 209
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0013D02, complete sequence
Length = 131883
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Minus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 36932 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 36873
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 36872 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 36813
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 36812 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 36753
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 36752 aaaagtgcaatgagccatccccagg 36728
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 37926 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 37867
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 37866 actgtgccctgtgagcacttcgatactgcatt 37835
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 36252 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 36193
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 36192 gcaccgataaaccatt 36177
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 36072 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 36013
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 36012 tgtttgcactgagggaaatcaacct 35988
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 36649 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 36590
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 36589 gttgatgatactgctggtgcagcaaag 36563
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 35674 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 35615
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 35614 gctcttggaaatttgaagg 35596
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 35530 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 35471
Query: 1051 a 1051
|
Sbjct: 35470 a 35470
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 36390 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 36331
Query: 672 attcagg 678
|||||||
Sbjct: 36330 attcagg 36324
Score = 44.1 bits (22), Expect = 0.21
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 110 ccccgccgcccgcgatccccactggctgcctcgt 143
||||||| |||| |||| ||||||||||||||||
Sbjct: 38281 ccccgcctcccgtgatctccactggctgcctcgt 38248
>gb|AACV01006370.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006370, whole
genome shotgun sequence
Length = 49684
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 26004 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 26063
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 26064 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 26123
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 26124 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 26183
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 26184 aaaagtgcaatgagccatccccagg 26208
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 26684 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 26743
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 26744 gcaccgataaaccatt 26759
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 25010 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 25069
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 25070 actgtgccctgtgagcacttcgatactgcatt 25101
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 26864 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 26923
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 26924 tgtttgcactgagggaaatcaacct 26948
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 27262 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 27321
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 27322 gctcttggaaatttgaagg 27340
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 26287 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 26346
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 26347 gttgatgatactgctggtgcagcaaag 26373
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 27406 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 27465
Query: 1051 a 1051
|
Sbjct: 27466 a 27466
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 26546 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 26605
Query: 672 attcagg 678
|||||||
Sbjct: 26606 attcagg 26612
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 1181502 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 1181561
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 1181562 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 1181621
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 1181622 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 1181681
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 1181682 aaaagtgcaatgagccatccccagg 1181706
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 1182182 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 1182241
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 1182242 gcaccgataaaccatt 1182257
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 1180508 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 1180567
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 1180568 actgtgccctgtgagcacttcgatactgcatt 1180599
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 1182362 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 1182421
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 1182422 tgtttgcactgagggaaatcaacct 1182446
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 1182760 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 1182819
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 1182820 gctcttggaaatttgaagg 1182838
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 1181785 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 1181844
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 1181845 gttgatgatactgctggtgcagcaaag 1181871
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 1182904 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 1182963
Query: 1051 a 1051
|
Sbjct: 1182964 a 1182964
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 1182044 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 1182103
Query: 672 attcagg 678
|||||||
Sbjct: 1182104 attcagg 1182110
Score = 44.1 bits (22), Expect = 0.21
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 110 ccccgccgcccgcgatccccactggctgcctcgt 143
||||||| |||| |||| ||||||||||||||||
Sbjct: 1180153 ccccgcctcccgtgatctccactggctgcctcgt 1180186
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 9879038 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 9879097
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 9879098 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 9879157
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 9879158 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 9879217
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 9879218 aaaagtgcaatgagccatccccagg 9879242
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 9879718 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 9879777
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 9879778 gcaccgataaaccatt 9879793
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 9878044 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 9878103
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 9878104 actgtgccctgtgagcacttcgatactgcatt 9878135
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 9879898 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 9879957
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 9879958 tgtttgcactgagggaaatcaacct 9879982
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 9880296 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 9880355
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 9880356 gctcttggaaatttgaagg 9880374
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 9879321 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 9879380
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 9879381 gttgatgatactgctggtgcagcaaag 9879407
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 9880440 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 9880499
Query: 1051 a 1051
|
Sbjct: 9880500 a 9880500
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 9879580 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 9879639
Query: 672 attcagg 678
|||||||
Sbjct: 9879640 attcagg 9879646
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 10071400 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 10071459
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 10071460 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 10071519
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 10071520 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 10071579
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 10071580 aaaagtgcaatgagccatccccagg 10071604
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 10072080 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 10072139
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 10072140 gcaccgataaaccatt 10072155
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 10070406 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 10070465
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 10070466 actgtgccctgtgagcacttcgatactgcatt 10070497
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 10072260 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 10072319
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 10072320 tgtttgcactgagggaaatcaacct 10072344
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 10072658 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 10072717
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 10072718 gctcttggaaatttgaagg 10072736
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 10071683 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 10071742
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 10071743 gttgatgatactgctggtgcagcaaag 10071769
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 10072802 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 10072861
Query: 1051 a 1051
|
Sbjct: 10072862 a 10072862
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 10071942 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 10072001
Query: 672 attcagg 678
|||||||
Sbjct: 10072002 attcagg 10072008
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 9835686 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 9835745
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 9835746 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 9835805
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 9835806 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 9835865
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 9835866 aaaagtgcaatgagccatccccagg 9835890
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 9836366 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 9836425
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 9836426 gcaccgataaaccatt 9836441
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 9834692 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 9834751
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 9834752 actgtgccctgtgagcacttcgatactgcatt 9834783
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 9836546 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 9836605
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 9836606 tgtttgcactgagggaaatcaacct 9836630
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 9836944 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 9837003
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 9837004 gctcttggaaatttgaagg 9837022
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 9835969 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 9836028
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 9836029 gttgatgatactgctggtgcagcaaag 9836055
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 9837088 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 9837147
Query: 1051 a 1051
|
Sbjct: 9837148 a 9837148
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 9836228 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 9836287
Query: 672 attcagg 678
|||||||
Sbjct: 9836288 attcagg 9836294
Score = 44.1 bits (22), Expect = 0.21
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 110 ccccgccgcccgcgatccccactggctgcctcgt 143
||||||| |||| |||| ||||||||||||||||
Sbjct: 9834337 ccccgcctcccgtgatctccactggctgcctcgt 9834370
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 200 bits (101), Expect = 2e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 294 caggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattggga 353
||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 9837565 caggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggt 9837624
Query: 354 ggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaa 413
||||||||||||||||| | ||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 9837625 ggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagag 9837684
Query: 414 gttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaacctg 473
|| || ||||| ||||| |||||| | ||||||||||| || || |||||||||||| ||
Sbjct: 9837685 gtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttg 9837744
Query: 474 aaaagtgctatgagtcatccccagg 498
|||||||| ||||| ||||||||||
Sbjct: 9837745 aaaagtgcaatgagccatccccagg 9837769
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 9838245 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 9838304
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 9838305 gcaccgataaaccatt 9838320
Score = 111 bits (56), Expect = 1e-021
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||
Sbjct: 9836571 cagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccag 9836630
Query: 261 actgtgccctgtgagcacttcgacactgcatt 292
||||||||||||||||||||||| ||||||||
Sbjct: 9836631 actgtgccctgtgagcacttcgatactgcatt 9836662
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 9838425 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 9838484
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 9838485 tgtttgcactgagggaaatcaacct 9838509
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 9838823 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 9838882
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 9838883 gctcttggaaatttgaagg 9838901
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 9837848 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 9837907
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 9837908 gttgatgatactgctggtgcagcaaag 9837934
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 9838967 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 9839026
Query: 1051 a 1051
|
Sbjct: 9839027 a 9839027
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 9838107 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 9838166
Query: 672 attcagg 678
|||||||
Sbjct: 9838167 attcagg 9838173
Score = 44.1 bits (22), Expect = 0.21
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 110 ccccgccgcccgcgatccccactggctgcctcgt 143
||||||| |||| |||| ||||||||||||||||
Sbjct: 9836216 ccccgcctcccgtgatctccactggctgcctcgt 9836249
>gb|AQ864061.1|AQ864061 nbeb0022M22f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022M22f, DNA sequence
Length = 438
Score = 147 bits (74), Expect = 2e-032
Identities = 137/158 (86%)
Strand = Plus / Plus
Query: 341 gaattcattgggaggtagcatacataggaattatgatcttttgcttcggcatagtttgca 400
|||||||||||| ||||||||||||||||| | ||| ||||| ||||| ||||| |||||
Sbjct: 28 gaattcattgggtggtagcatacataggaactttgaccttttacttcgtcatagattgca 87
Query: 401 cattgtaggagaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaa 460
|||||| ||||| || || ||||| ||||| |||||| | ||||||||||| || || ||
Sbjct: 88 cattgttggagaggtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaa 147
Query: 461 gattgaaaacctgaaaagtgctatgagtcatccccagg 498
|||||||||| |||||||||| ||||| ||||||||||
Sbjct: 148 gattgaaaacttgaaaagtgcaatgagccatccccagg 185
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 264 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 323
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 324 gttgatgatactgctggtgcagcaaag 350
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0022M22, from chromosome 3, complete sequence
Length = 124166
Score = 147 bits (74), Expect = 2e-032
Identities = 137/158 (86%)
Strand = Plus / Plus
Query: 341 gaattcattgggaggtagcatacataggaattatgatcttttgcttcggcatagtttgca 400
|||||||||||| ||||||||||||||||| | ||| ||||| ||||| ||||| |||||
Sbjct: 1 gaattcattgggtggtagcatacataggaactttgaccttttacttcgtcatagattgca 60
Query: 401 cattgtaggagaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaa 460
|||||| ||||| || || ||||| ||||| |||||| | ||||||||||| || || ||
Sbjct: 61 cattgttggagaggtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaa 120
Query: 461 gattgaaaacctgaaaagtgctatgagtcatccccagg 498
|||||||||| |||||||||| ||||| ||||||||||
Sbjct: 121 gattgaaaacttgaaaagtgcaatgagccatccccagg 158
Score = 111 bits (56), Expect = 1e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct: 634 aggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctc 693
Query: 736 gcactgataaaccatt 751
|||| |||||||||||
Sbjct: 694 gcaccgataaaccatt 709
Score = 105 bits (53), Expect = 7e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 814 agactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttgggg 873
Query: 814 tatttgcactgagggacatcaacct 838
| |||||||||||||| ||||||||
Sbjct: 874 tgtttgcactgagggaaatcaacct 898
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 915 tttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaat 974
||||| ||||| || ||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 1212 tttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaat 1271
Query: 975 gctcttggaaatctgaagg 993
|||||||||||| ||||||
Sbjct: 1272 gctcttggaaatttgaagg 1290
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 495 caggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagct 554
||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 237 caggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagct 296
Query: 555 gttgacgacactgctggtgcagcaaag 581
||||| || ||||||||||||||||||
Sbjct: 297 gttgatgatactgctggtgcagcaaag 323
Score = 89.7 bits (45), Expect = 4e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaacctt 1050
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 1356 aggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagctt 1415
Query: 1051 a 1051
|
Sbjct: 1416 a 1416
Score = 54.0 bits (27), Expect = 2e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 612 ggtgctattgctagttcgttggcggctaaactgtatggattggatgttcttgctgagaat 671
||||| ||||| ||||| |||| ||| |||| |||||| || ||||||||||||| |||
Sbjct: 496 ggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaat 555
Query: 672 attcagg 678
|||||||
Sbjct: 556 attcagg 562
>dbj|AP003831.2| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1445_H10,
*** SEQUENCING IN PROGRESS ***
Length = 100886
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 46679 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 46738
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 46739 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 46798
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 46799 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 46858
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 46859 ttgagaagtgccatgagccatcc 46881
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 47230 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 47289
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 47290 atggactggatattcttgcagaaaatattcagg 47322
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 47400 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 47459
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 47460 gtactgataagccatt 47475
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 47032 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 47073
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 48084 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 48132
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 47566 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 47625
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 47626 tgtttgcactgag 47638
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 47942 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 48000
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0627E10
Length = 163388
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 55283 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 55224
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 55223 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 55164
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 55163 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 55104
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 55103 ttgagaagtgccatgagccatcc 55081
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 54732 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 54673
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 54672 atggactggatattcttgcagaaaatattcagg 54640
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 54562 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 54503
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 54502 gtactgataagccatt 54487
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 54930 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 54889
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 53878 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 53830
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 54396 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 54337
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 54336 tgtttgcactgag 54324
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 54020 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 53962
>gb|AACV01017072.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017072, whole
genome shotgun sequence
Length = 30702
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 16499 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 16558
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 16559 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 16618
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 16619 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 16678
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 16679 ttgagaagtgccatgagccatcc 16701
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 17050 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 17109
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 17110 atggactggatattcttgcagaaaatattcagg 17142
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 17220 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 17279
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 17280 gtactgataagccatt 17295
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 16852 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 16893
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 17904 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 17952
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 17386 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 17445
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 17446 tgtttgcactgag 17458
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 17762 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 17820
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 17141616 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 17141557
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 17141556 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 17141497
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 17141496 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 17141437
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 17141436 ttgagaagtgccatgagccatcc 17141414
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 17141065 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 17141006
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 17141005 atggactggatattcttgcagaaaatattcagg 17140973
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 17140895 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 17140836
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 17140835 gtactgataagccatt 17140820
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 17141263 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 17141222
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 17140211 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 17140163
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 17140729 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 17140670
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 17140669 tgtttgcactgag 17140657
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 17140353 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 17140295
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 15137042 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 15136983
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 15136982 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 15136923
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 15136922 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 15136863
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 15136862 ttgagaagtgccatgagccatcc 15136840
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 15136491 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 15136432
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 15136431 atggactggatattcttgcagaaaatattcagg 15136399
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 15136321 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 15136262
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 15136261 gtactgataagccatt 15136246
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 15136689 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 15136648
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 15135637 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 15135589
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 15136155 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 15136096
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 15136095 tgtttgcactgag 15136083
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 15135779 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 15135721
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 28536481 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 28536422
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 28536421 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 28536362
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 28536361 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 28536302
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 28536301 ttgagaagtgccatgagccatcc 28536279
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 28535930 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 28535871
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 28535870 atggactggatattcttgcagaaaatattcagg 28535838
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 28535760 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 28535701
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 28535700 gtactgataagccatt 28535685
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 28536128 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 28536087
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 28535076 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 28535028
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 28535594 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 28535535
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 28535534 tgtttgcactgag 28535522
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 28535218 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 28535160
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 109 bits (55), Expect = 4e-021
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 291 tttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaattcattg 350
||||||||||| |||| ||||| ||||| | || || ||||||||||||||||| |||
Sbjct: 29528611 tttcaggctgtcgaaaattgggtggctgaccgcgcggtcctgccacttgagaattccttg 29528552
Query: 351 ggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacattgtagga 410
|| |||||||| ||| | || ||||| ||| | ||||| ||||| |||||||||| ||
Sbjct: 29528551 ggtggtagcatccatcgaaactatgaccttctacttcgccataggctgcacattgttggt 29528492
Query: 411 gaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagattgaaaac 470
|| || |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||
Sbjct: 29528491 gaggtgcgccttgcagttcgccattgcttgttagcaaatcgtggtgtgaagatccaaaat 29528432
Query: 471 ctgaaaagtgctatgagtcatcc 493
||| |||||| ||||| |||||
Sbjct: 29528431 ttgagaagtgccatgagccatcc 29528409
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 586 ttgcagaacatatgctccaggacactggtgctattgctagttcgttggcggctaaactgt 645
|||||||||| | ||||||||||||||| || |||||||||| ||||| ||| |||| |
Sbjct: 29528060 ttgcagaacaaaagctccaggacactggagcagttgctagttcattggcagctcaacttt 29528001
Query: 646 atggattggatgttcttgctgagaatattcagg 678
||||| ||||| ||||||| || ||||||||||
Sbjct: 29528000 atggactggatattcttgcagaaaatattcagg 29527968
Score = 63.9 bits (32), Expect = 2e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 676 aggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacctc 735
||||||||| |||||||| || || ||||||||||| ||||| |||||||| || ||||
Sbjct: 29527890 aggatgacaccgataatgtaacacgctttatgatgctggctcgggaacccattattcctc 29527831
Query: 736 gcactgataaaccatt 751
| |||||||| |||||
Sbjct: 29527830 gtactgataagccatt 29527815
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 540 gagcatagagaagctgttgacgacactgctggtgcagcaaag 581
||||||||||||||||||||||| || || ||||||||||||
Sbjct: 29528258 gagcatagagaagctgttgacgatacagcaggtgcagcaaag 29528217
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 991 aggagtttgcaacatttttaagagttcttggaagctatcctacagatgt 1039
||||||| ||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 29527206 aggagttcgcaacctttctaagagttcttgggagctatcctaccgatgt 29527158
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 754 agacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttgctg 813
|||| |||||||||||||| | |||||||| ||||| || || |||||||| || || |
Sbjct: 29527724 agactagcatagtcttttctttggaagaagggcctgggcaactatttaaggcgctggcag 29527665
Query: 814 tatttgcactgag 826
| |||||||||||
Sbjct: 29527664 tgtttgcactgag 29527652
Score = 46.1 bits (23), Expect = 0.053
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 921 taccttttttatgttgaccttgaagcatcaatggctgatccaaagactcagaatgctct 979
||||| || ||||| || ||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 29527348 tacctcttctatgtagatcttgaggcgtcaatggctgatccaaatgctcaaaatgctct 29527290
>gb|AACV01012801.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012801, whole
genome shotgun sequence
Length = 17843
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 98 gcccgcctccgtccccgccgcccgcg 123
||||||| ||||||||||||||||||
Sbjct: 3340 gcccgcccccgtccccgccgcccgcg 3365
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 98 gcccgcctccgtccccgccgcccgcg 123
||||||| ||||||||||||||||||
Sbjct: 11414333 gcccgcccccgtccccgccgcccgcg 11414308
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 98 gcccgcctccgtccccgccgcccgcg 123
||||||| ||||||||||||||||||
Sbjct: 28714646 gcccgcccccgtccccgccgcccgcg 28714621
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,996,211
Number of Sequences: 438736
Number of extensions: 1996211
Number of successful extensions: 15506
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15080
Number of HSP's gapped (non-prelim): 413
length of query: 1442
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1421
effective length of database: 2,791,206,460
effective search space: 3966304379660
effective search space used: 3966304379660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)