BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB673762.1|CB673762 OSJNEe08H08.r OSJNEe Oryza sativa (j... 426 e-117
dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA... 426 e-117
gb|AACV01010539.1| Oryza sativa (japonica cultivar-group) c... 426 e-117
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 426 e-117
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 426 e-117
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 426 e-117
emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromoso... 426 e-117
emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromoso... 426 e-117
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 426 e-117
gb|CB647323.1|CB647323 OSJNEb10D07.r OSJNEb Oryza sativa (j... 412 e-112
ref|XM_474034.1| Oryza sativa (japonica cultivar-group), p... 404 e-110
gb|AQ328669.1|AQ328669 nbxb0043L09r CUGI Rice BAC Library O... 228 4e-057
gb|AU173249.1|AU173249 AU173249 Rice root Oryza sativa (jap... 48 0.008
gb|AQ446934.2|AQ446934 nbxb0050J04r CUGI Rice BAC Library O... 46 0.031
dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.031
gb|AACV01006898.1| Oryza sativa (japonica cultivar-group) c... 46 0.031
ref|XM_468666.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.031
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 46 0.031
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.031
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
gb|AC120529.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
dbj|AP004701.1| Oryza sativa (japonica cultivar-group) chro... 42 0.48
dbj|AP005159.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AACV01018555.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.48
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
>gb|CB673762.1|CB673762 OSJNEe08H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08H08 3', mRNA sequence
Length = 861
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 394 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 453
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 454 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 513
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 514 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 573
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 574 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 633
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 634 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 693
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 694 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 753
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 754 aacattcataccaaatgcccagc 776
>dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119I03, full
insert sequence
Length = 2377
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 1992 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 1933
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 1932 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 1873
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 1872 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 1813
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 1812 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 1753
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 1752 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 1693
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 1692 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 1633
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 1632 aacattcataccaaatgcccagc 1610
>gb|AACV01010539.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010539, whole
genome shotgun sequence
Length = 39866
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 3918 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 3859
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 3858 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 3799
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 3798 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 3739
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 3738 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 3679
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 3678 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 3619
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 3618 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 3559
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 3558 aacattcataccaaatgcccagc 3536
>ref|NT_107200.1| Oryza sativa (japonica cultivar-group)
Length = 1324591
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 1208003 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 1207944
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 1207943 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 1207884
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 1207883 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 1207824
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 1207823 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 1207764
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 1207763 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 1207704
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 1207703 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 1207644
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 1207643 aacattcataccaaatgcccagc 1207621
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 10086761 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 10086702
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 10086701 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 10086642
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 10086641 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 10086582
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 10086581 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 10086522
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 10086521 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 10086462
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 10086461 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 10086402
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 10086401 aacattcataccaaatgcccagc 10086379
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 29230860 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 29230801
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 29230800 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 29230741
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 29230740 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 29230681
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 29230680 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 29230621
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 29230620 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 29230561
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 29230560 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 29230501
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 29230500 aacattcataccaaatgcccagc 29230478
>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
complete sequence
Length = 159502
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 159110 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 159051
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 159050 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 158991
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 158990 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 158931
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 158930 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 158871
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 158870 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 158811
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 158810 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 158751
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 158750 aacattcataccaaatgcccagc 158728
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
complete sequence
Length = 123480
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 6322 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 6263
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 6262 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 6203
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 6202 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 6143
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 6142 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 6083
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 6082 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 6023
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 6022 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 5963
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 5962 aacattcataccaaatgcccagc 5940
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 426 bits (215), Expect = e-117
Identities = 342/383 (89%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 32389521 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 32389462
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 32389461 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 32389402
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 32389401 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 32389342
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 32389341 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 32389282
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 32389281 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 32389222
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 32389221 ctcttgccagtaatgatatatacctgtcacattcttattcctccacatcacaagatcaag 32389162
Query: 824 cacgttcataccaaatgcccagc 846
|| |||||||||||||||||||
Sbjct: 32389161 aacattcataccaaatgcccagc 32389139
>gb|CB647323.1|CB647323 OSJNEb10D07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10D07 3', mRNA sequence
Length = 762
Score = 412 bits (208), Expect = e-112
Identities = 311/344 (90%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 386 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 445
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct: 446 tgaatagtctacatagttatcccaaaagcccttgtacttctccatcccaatttttagcca 505
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 506 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 565
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 566 tgttgtgtagcccagtcccaagacatgccatttggggtccaatggctcaaccaagccata 625
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 626 gaaagcaagaagaccaggtggtaaagatccaagcttccatagggtatgatcagcattgcg 685
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctcc 807
||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 686 ctcttgccagtaatgatatatacctgtcacattcttattcctcc 729
>ref|XM_474034.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 404 bits (204), Expect = e-110
Identities = 313/348 (89%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 500 tgaagcactgctgaatcaaagggtgtgaatagtccacatagttatcccaaaagctcttgt 559
|||||||| |||||| || ||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 1663 tgaagcaccgctgaagcagagggtgtgaatagtctacatagttatcccagaagcccttgt 1604
Query: 560 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 619
|||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct: 1603 acttctccatcccaatttttagccatggcttcatatttccattgtaatgcaacactgcac 1544
Query: 620 cttccttgatagtagcaagatccacagttgtgtagccaagtcccaaaacatgccatttgg 679
|||| ||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 1543 cttctttgatagtagcgggatccactgttgtgtagcccagtcccaagacatgccatttgg 1484
Query: 680 gatccaatgcttcaaccaagccatagaaagcaagaagtccaggtggtaaagacccaagct 739
| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 1483 ggtccaatggctcaaccaagccatagaaagcaagaagaccaggtggtaaagatccaagct 1424
Query: 740 tccatagagtatgatca-cattgcgctcctgccaataatgatatatgcctgtcacattct 798
||||||| ||||||||| |||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 1423 tccatagggtatgatcagcattgcgctcttgccagtaatgatatatacctgtcacattct 1364
Query: 799 tgttcctccattcaaccagatcaagcacgttcataccaaatgcccagc 846
| |||||||| || |||||||| || |||||||||||||||||||
Sbjct: 1363 tattcctccacatcacaagatcaagaacattcataccaaatgcccagc 1316
>gb|AQ328669.1|AQ328669 nbxb0043L09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0043L09r, DNA sequence
Length = 593
Score = 228 bits (115), Expect = 4e-057
Identities = 184/207 (88%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||||||||||||||||||||||| || | || |||||||| |||||| || ||||||
Sbjct: 387 aaaaattctaatgttgatacacattcattagtgcgtgaagcaccgctgaagcagagggtg 446
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 447 tgaatagtctacatagttatcccagaagcccttgtacttctccatcccaatttttagcca 506
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct: 507 tggcttcatatttccattgtaatgcaacactgcaccttctttgatagtagcgggatccac 566
Query: 645 agttgtgtagccaagtcccaaaacatg 671
||||||||||| |||||||| |||||
Sbjct: 567 tgttgtgtagcccagtcccaagacatg 593
>gb|AU173249.1|AU173249 AU173249 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1871, mRNA sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacat 488
||||||||||||||||||||||||
Sbjct: 35 aaaaattctaatgttgatacacat 12
>gb|AQ446934.2|AQ446934 nbxb0050J04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0050J04r, DNA sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 505 agccatggtttcatattcccattgtagtgca 535
>dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048J06, full
insert sequence
Length = 2280
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 1675 agccatggtttcatattcccattgtagtgca 1645
>gb|AACV01006898.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006898, whole
genome shotgun sequence
Length = 46047
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 7690 agccatggtttcatattcccattgtagtgca 7660
>ref|XM_468666.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2282
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 1677 agccatggtttcatattcccattgtagtgca 1647
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 401792 agccatggtttcatattcccattgtagtgca 401822
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 3626795 agccatggtttcatattcccattgtagtgca 3626825
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 17677502 agccatggtttcatattcccattgtagtgca 17677532
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 16915624 agccatggtttcatattcccattgtagtgca 16915654
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 16922051 agccatggtttcatattcccattgtagtgca 16922081
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0039N21, complete sequence
Length = 151732
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
|||||||| |||||||| |||||||||||||
Sbjct: 65055 agccatggtttcatattcccattgtagtgca 65085
>dbj|AP004701.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0521C11, ***
SEQUENCING IN PROGRESS ***
Length = 145222
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 11958 cattgtagtgcagtactgcac 11938
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0016C11
Length = 170723
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 90382 cattgtagtgcagtactgcac 90362
>gb|AACV01018555.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018555, whole
genome shotgun sequence
Length = 24283
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 12460 cattgtagtgcagtactgcac 12440
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 21026018 cattgtagtgcagtactgcac 21025998
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 12515523 cattgtagtgcagtactgcac 12515503
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 20117529 cattgtagtgcagtactgcac 20117509
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 cattgtagtgcagtactgcac 619
|||||||||||||||||||||
Sbjct: 21264105 cattgtagtgcagtactgcac 21264085
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,357,667
Number of Sequences: 438736
Number of extensions: 1357667
Number of successful extensions: 7608
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7399
Number of HSP's gapped (non-prelim): 177
length of query: 846
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 825
effective length of database: 2,791,206,460
effective search space: 2302745329500
effective search space used: 2302745329500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)