BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing t... 315 2e-083
dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA... 315 2e-083
dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA... 315 2e-083
gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid c... 291 3e-076
gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (ja... 262 3e-067
gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (jap... 184 5e-044
dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA... 147 1e-032
ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA 147 1e-032
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) c... 123 2e-025
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 123 2e-025
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (... 117 1e-023
gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature lea... 109 2e-021
gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (ja... 94 1e-016
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 92 6e-016
gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) c... 92 6e-016
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 92 6e-016
dbj|AP005733.3| Oryza sativa (japonica cultivar-group) geno... 92 6e-016
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 92 6e-016
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 92 6e-016
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 92 6e-016
dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA... 88 9e-015
gb|C26711.1|C26711 C26711 Rice callus cDNA Oryza sativa (ja... 74 1e-010
gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japo... 74 1e-010
gb|AC109594.2| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|AC109365.2| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|C28427.1|C28427 C28427 Rice callus cDNA Oryza sativa (ja... 68 8e-009
gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativ... 60 2e-006
gb|CF293669.1|CF293669 30DGS--02-O24.b1 Rice leaf plasmid c... 58 8e-006
gb|AU031566.1|AU031566 AU031566 Rice cDNA from immature lea... 42 0.47
gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.47
ref|NM_191863.1| Oryza sativa (japonica cultivar-group), p... 42 0.47
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.47
dbj|AP002899.2| Oryza sativa (japonica cultivar-group) geno... 42 0.47
dbj|AP003343.3| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
>gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-K23, mRNA sequence
Length = 638
Score = 315 bits (159), Expect = 2e-083
Identities = 374/454 (82%)
Strand = Plus / Minus
Query: 121 cgtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctc 180
|||||||||||||||||| | |||||||| || || |||||||||||||||||
Sbjct: 595 cgtagacttgctgatgagtttctcaaatgcttctggtccattctgttcaatatatctctc 536
Query: 181 tgcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatat 240
|||||| |||||||||| ||||| || || || |||||| || |||||| |
Sbjct: 535 cgcagctgatagcacatcatcaggtttactcaggttttcttttcttggaacataccagac 476
Query: 241 gttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagn 300
|| |||||||| || ||||||||||||||||| ||| || || |||||||| ||||
Sbjct: 475 atttactatttgacgattcacaaacattggccgcacaaagtgatcataaacataagcagc 416
Query: 301 accattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaa 360
||||| ||| ||||| |||||||| ||||||| ||||||| ||||||||| ||||||||
Sbjct: 415 accatggaagcaaggtaagaccaaccagcagttgaagaacaactttgcataggaccaaaa 356
Query: 361 tggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnna 420
|||||||| || || | |||||||||||| |||||||||||||||||||| ||||
Sbjct: 355 aggaagccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacag 296
Query: 421 cacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaac 480
|||||||||||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||
Sbjct: 295 cacccagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcac 236
Query: 481 agaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttatt 540
||| ||||||| |||||||||||||| | | ||||||||| ||||| |||||||| ||
Sbjct: 235 agaggcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgtt 176
Query: 541 ggccagcaccttgaggaaagatccggaccccatc 574
|||||||| ||||||||||||||| |||||||||
Sbjct: 175 ggccagcagcttgaggaaagatccagaccccatc 142
>dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A03, full
insert sequence
Length = 1072
Score = 315 bits (159), Expect = 2e-083
Identities = 374/454 (82%)
Strand = Plus / Minus
Query: 121 cgtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctc 180
|||||||||||||||||| | |||||||| || || |||||||||||||||||
Sbjct: 566 cgtagacttgctgatgagtttctcaaatgcttctggtccattctgttcaatatatctctc 507
Query: 181 tgcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatat 240
|||||| |||||||||| ||||| || || || |||||| || |||||| |
Sbjct: 506 cgcagctgatagcacatcatcaggtttactcaggttttcttttcttggaacataccagac 447
Query: 241 gttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagn 300
|| |||||||| || ||||||||||||||||| ||| || || |||||||| ||||
Sbjct: 446 atttactatttgacgattcacaaacattggccgcacaaagtgatcataaacataagcagc 387
Query: 301 accattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaa 360
||||| ||| ||||| |||||||| ||||||| ||||||| ||||||||| ||||||||
Sbjct: 386 accatggaagcaaggtaagaccaaccagcagttgaagaacaactttgcataggaccaaaa 327
Query: 361 tggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnna 420
|||||||| || || | |||||||||||| |||||||||||||||||||| ||||
Sbjct: 326 aggaagccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacag 267
Query: 421 cacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaac 480
|||||||||||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||
Sbjct: 266 cacccagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcac 207
Query: 481 agaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttatt 540
||| ||||||| |||||||||||||| | | ||||||||| ||||| |||||||| ||
Sbjct: 206 agaggcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgtt 147
Query: 541 ggccagcaccttgaggaaagatccggaccccatc 574
|||||||| ||||||||||||||| |||||||||
Sbjct: 146 ggccagcagcttgaggaaagatccagaccccatc 113
>dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106M05, full
insert sequence
Length = 1084
Score = 315 bits (159), Expect = 2e-083
Identities = 374/454 (82%)
Strand = Plus / Minus
Query: 121 cgtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctc 180
|||||||||||||||||| | |||||||| || || |||||||||||||||||
Sbjct: 623 cgtagacttgctgatgagtttctcaaatgcttctggtccattctgttcaatatatctctc 564
Query: 181 tgcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatat 240
|||||| |||||||||| ||||| || || || |||||| || |||||| |
Sbjct: 563 cgcagctgatagcacatcatcaggtttactcaggttttcttttcttggaacataccagac 504
Query: 241 gttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagn 300
|| |||||||| || ||||||||||||||||| ||| || || |||||||| ||||
Sbjct: 503 atttactatttgacgattcacaaacattggccgcacaaagtgatcataaacataagcagc 444
Query: 301 accattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaa 360
||||| ||| ||||| |||||||| ||||||| ||||||| ||||||||| ||||||||
Sbjct: 443 accatggaagcaaggtaagaccaaccagcagttgaagaacaactttgcataggaccaaaa 384
Query: 361 tggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnna 420
|||||||| || || | |||||||||||| |||||||||||||||||||| ||||
Sbjct: 383 aggaagccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacag 324
Query: 421 cacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaac 480
|||||||||||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||
Sbjct: 323 cacccagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcac 264
Query: 481 agaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttatt 540
||| ||||||| |||||||||||||| | | ||||||||| ||||| |||||||| ||
Sbjct: 263 agaggcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgtt 204
Query: 541 ggccagcaccttgaggaaagatccggaccccatc 574
|||||||| ||||||||||||||| |||||||||
Sbjct: 203 ggccagcagcttgaggaaagatccagaccccatc 170
>gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O24, mRNA sequence
Length = 522
Score = 291 bits (147), Expect = 3e-076
Identities = 282/330 (85%)
Strand = Plus / Minus
Query: 245 actatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagnacca 304
|||||||| || ||||||||||||||||| ||| || || |||||||| |||| ||||
Sbjct: 503 actatttgacgattcacaaacattggccgcacaaagtgatcataaacataagcagcacca 444
Query: 305 ttgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaatgga 364
| ||| ||||| |||||||| ||||||| ||||||| ||||||||| |||||||| |||
Sbjct: 443 tggaagcaaggtaagaccaaccagcagttgaagaacaactttgcataggaccaaaaagga 384
Query: 365 agccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacc 424
||||| || || | |||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 383 agccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacc 324
Query: 425 cagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacagaa 484
|||||||||||||| ||||||||||| |||||| |||||| ||||| ||||| |||||
Sbjct: 323 cagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagag 264
Query: 485 gcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattggcc 544
||||||| |||||||||||||| | | ||||||||| ||||| |||||||| ||||||
Sbjct: 263 gcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgttggcc 204
Query: 545 agcaccttgaggaaagatccggaccccatc 574
|||| ||||||||||||||| |||||||||
Sbjct: 203 agcagcttgaggaaagatccagaccccatc 174
>gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60938_1A, mRNA sequence
Length = 463
Score = 262 bits (132), Expect = 3e-067
Identities = 274/326 (84%)
Strand = Plus / Minus
Query: 249 tttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagnaccattga 308
|||| || ||||||||||||||||| ||| || || ||| |||| |||| |||| ||
Sbjct: 454 tttgncgattcacaaacattggccgcacaaagtgatcataancataagcagcnccatgga 395
Query: 309 accaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaatggaagcc 368
| ||||| ||| |||| ||||||| ||||||| ||||||||| |||||||| |||||||
Sbjct: 394 agcaaggtaagnccaaccagcagttgaagaacaactttgcataggaccaaaaaggaagcc 335
Query: 369 actcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagt 428
| || || | |||||||||||| |||||||||||||| ||||| |||| ||||||||
Sbjct: 334 attcaattactggagcaaaagtaagctcaaacaaagtnataaacgagtacagcacccagt 275
Query: 429 aagtgagccactgctgatcatctacaggattttttgtctctatagctctaacagaagcat 488
|||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||||| ||||
Sbjct: 274 aagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggcat 215
Query: 489 atagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattggccagca 548
||| |||||||||||||| | | ||||||||| ||||| |||||||| ||||||||||
Sbjct: 214 ataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgttggccagca 155
Query: 549 ccttgaggaaagatccggaccccatc 574
||||||||||||||| |||||||||
Sbjct: 154 gcttgaggaaagatccagaccccatc 129
>gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10978_1A, mRNA sequence
Length = 346
Score = 184 bits (93), Expect = 5e-044
Identities = 184/214 (85%), Gaps = 1/214 (0%)
Strand = Plus / Minus
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaa-gtgataaatgagtnnna 420
|||||||| || || | |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 346 ggaagccattcaattactggagcaaaagtaagctcaaacaaaagtgataaacgagtacag 287
Query: 421 cacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaac 480
|||||||||||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||
Sbjct: 286 cacccagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcac 227
Query: 481 agaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttatt 540
||| ||||||| |||||||||||||| | | ||||||||| ||||| |||||||| ||
Sbjct: 226 agaggcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgtt 167
Query: 541 ggccagcaccttgaggaaagatccggaccccatc 574
|||||||| ||||||||||||||| |||||||||
Sbjct: 166 ggccagcagcttgaggaaagatccagaccccatc 133
>dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full
insert sequence
Length = 932
Score = 147 bits (74), Expect = 1e-032
Identities = 221/272 (81%)
Strand = Plus / Minus
Query: 296 gcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgac 355
|||| ||||||||| | ||||||||||| |||| || || |||| || ||||| |||
Sbjct: 422 gcagcaccattgaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagac 363
Query: 356 caaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgag 415
|| || |||||||| || | | |||| |||||| |||||||| | ||||||||| |||
Sbjct: 362 cataaaggaagccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgag 303
Query: 416 tnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagct 475
| |||||||||| |||||||| |||||||||||||||| | |||||| ||||| |||
Sbjct: 302 tacaacacccagtatgtgagccattgctgatcatctacagcagattttgtttctatcgct 243
Query: 476 ctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaag 535
| |||||| |||||||| |||||||||||||| | | ||||| ||||| ||||| |||
Sbjct: 242 cgaacagatgcatatagtggataagcaagtgaaactataggccccgcaagaacatccaag 183
Query: 536 ttattggccagcaccttgaggaaagatccgga 567
|| || ||| |||||||||||||||||||||
Sbjct: 182 ttctttaccaccaccttgaggaaagatccgga 151
>ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 932
Score = 147 bits (74), Expect = 1e-032
Identities = 221/272 (81%)
Strand = Plus / Minus
Query: 296 gcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgac 355
|||| ||||||||| | ||||||||||| |||| || || |||| || ||||| |||
Sbjct: 422 gcagcaccattgaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagac 363
Query: 356 caaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgag 415
|| || |||||||| || | | |||| |||||| |||||||| | ||||||||| |||
Sbjct: 362 cataaaggaagccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgag 303
Query: 416 tnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagct 475
| |||||||||| |||||||| |||||||||||||||| | |||||| ||||| |||
Sbjct: 302 tacaacacccagtatgtgagccattgctgatcatctacagcagattttgtttctatcgct 243
Query: 476 ctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaag 535
| |||||| |||||||| |||||||||||||| | | ||||| ||||| ||||| |||
Sbjct: 242 cgaacagatgcatatagtggataagcaagtgaaactataggccccgcaagaacatccaag 183
Query: 536 ttattggccagcaccttgaggaaagatccgga 567
|| || ||| |||||||||||||||||||||
Sbjct: 182 ttctttaccaccaccttgaggaaagatccgga 151
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 88150 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 88209
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 88210 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 88269
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 88270 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 88329
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 88330 tttgcataggaccaaaaaggaagcc 88354
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 88666 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 88725
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 88726 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 88777
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 90329 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 90386
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 5900 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 5959
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 5960 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 6019
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 6020 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 6079
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 6080 tttgcataggaccaaaaaggaagcc 6104
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 6416 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 6475
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 6476 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 6527
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 8079 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 8136
>gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013344, whole
genome shotgun sequence
Length = 27471
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Minus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 19508 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 19449
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 19448 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 19389
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 19388 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 19329
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 19328 tttgcataggaccaaaaaggaagcc 19304
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 18992 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 18933
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 18932 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 18881
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 17329 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 17272
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 2263354 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 2263413
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 2263414 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 2263473
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 2263474 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 2263533
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 2263534 tttgcataggaccaaaaaggaagcc 2263558
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 2263870 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 2263929
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 2263930 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 2263981
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 2265533 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 2265590
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 6499996 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 6500055
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 6500056 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 6500115
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 6500116 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 6500175
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 6500176 tttgcataggaccaaaaaggaagcc 6500200
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 6500512 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 6500571
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 6500572 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 6500623
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 6502175 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 6502232
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 6499996 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 6500055
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 6500056 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 6500115
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 6500116 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 6500175
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 6500176 tttgcataggaccaaaaaggaagcc 6500200
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 6500512 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 6500571
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 6500572 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 6500623
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 6502175 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 6502232
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 123 bits (62), Expect = 2e-025
Identities = 166/205 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 6571774 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 6571833
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatgg 283
||| || |||||| | || |||||||| || ||||||||||||||||| ||| ||
Sbjct: 6571834 cttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtga 6571893
Query: 284 tcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagc 343
|| |||||||| |||| ||||| ||| ||||| |||||||| ||||||| ||||||| |
Sbjct: 6571894 tcataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaac 6571953
Query: 344 tttgcatacgaccaaaatggaagcc 368
|||||||| |||||||| |||||||
Sbjct: 6571954 tttgcataggaccaaaaaggaagcc 6571978
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 6572290 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 6572349
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 6572350 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 6572401
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 517 cccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
|||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 6573953 cccggcgaggacgtcgaagttgttggccagcagcttgaggaaagatccagaccccatc 6574010
>gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025H11f, DNA sequence
Length = 771
Score = 117 bits (59), Expect = 1e-023
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 379 tggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagcca 438
|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 602 tggagcaaaagtaagctcaaacaaagtgataaacgagtacagcacccagtaagtgagcca 543
Query: 439 ctgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
||||||||||| |||||| |||||| ||||| ||||| ||||| ||||||
Sbjct: 542 ttgctgatcatcaacaggagattttgtttctattgctctcacagaggcatat 491
>gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60691_1A, mRNA sequence
Length = 314
Score = 109 bits (55), Expect = 2e-021
Identities = 130/153 (84%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 423 cccagtaagtgagccactgctgatcatctacaggattttttgtct-ctatagctctaaca 481
|||||||||||||||| |||||| |||| |||||| |||||| | |||| |||| |||
Sbjct: 303 cccagtaagtgagccattgctga-catcaacaggagattttgttttctattnctctcaca 245
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
|| ||||||| |||||||||| ||| | | ||||||||| ||||| |||||||| |||
Sbjct: 244 gaggcatataatggataagcaantgaaactaatggcccggcgaggacgtcgaagttgttg 185
Query: 542 gccagcaccttgaggaaagatccggaccccatc 574
||||||| ||||||||||||||| |||||||||
Sbjct: 184 gccagcagcttgaggaaagatccagaccccatc 152
>gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51873_1A, mRNA sequence
Length = 445
Score = 93.7 bits (47), Expect = 1e-016
Identities = 124/149 (83%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 420 acacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctc-ta 478
|||||||||| |||||||| |||||||||||||||| | |||||| ||||| |||| |
Sbjct: 350 acacccagtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaa 291
Query: 479 acagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagtta 538
| ||| |||||||| |||||||||||||| | | ||||| ||||| ||||| |||||
Sbjct: 290 anagatgcatatagtggataagcaagtgaaactataggccccgcaagaacatccaagttc 231
Query: 539 ttggccagcaccttgaggaaagatccgga 567
|| ||| ||||||||||||||| |||||
Sbjct: 230 tttaccaccaccttgaggaaaganccgga 202
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078N11
Length = 155168
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 62347 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 62288
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 62287 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 62237
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 61282 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 61236
>gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005417, whole
genome shotgun sequence
Length = 20497
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 14185 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 14126
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 14125 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 14075
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 13120 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 13074
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 6591949 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 6591890
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 6591889 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 6591839
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 6590884 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 6590838
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0024K03
Length = 119796
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 109524 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 109465
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 109464 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 109414
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 108459 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 108413
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 17987110 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 17987051
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 17987050 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 17987000
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 17986045 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 17985999
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 31440174 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 31440115
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 31440114 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 31440064
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 31439109 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 31439063
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 91.7 bits (46), Expect = 6e-016
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 380 ggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccac 439
|||| |||||| |||||||| | ||||||||| |||| |||||||||| ||||||||
Sbjct: 31426950 ggagaaaaagtgagctcaaatagagtgataaacgagtacaacacccagtatgtgagccat 31426891
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatat 490
|||||||||||||||| | |||||| ||||| |||| |||||| ||||||
Sbjct: 31426890 tgctgatcatctacagcagattttgtttctatcgctcgaacagatgcatat 31426840
Score = 46.1 bits (23), Expect = 0.030
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccgga 567
||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 31425885 gcaagaacatccaagttctttaccaccaccttgaggaaagatccgga 31425839
>dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130B07, full
insert sequence
Length = 1430
Score = 87.7 bits (44), Expect = 9e-015
Identities = 176/221 (79%)
Strand = Plus / Minus
Query: 355 ccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatga 414
|||||| |||||||||| ||||||| ||||| || |||||||||| || || |||||
Sbjct: 467 ccaaaaaggaagccactgaataattgatgcaaatgtgagctcaaacagtgttattaatga 408
Query: 415 gtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagc 474
|| ||||||||| |||||||| || |||||||| ||||| ||| || ||||| ||
Sbjct: 407 gtacatcacccagtatgtgagccattgttgatcatccacaggggatttggtttctattgc 348
Query: 475 tctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaa 534
|||| ||||| || | |||||||| |||| | | ||||| ||||| ||||||||
Sbjct: 347 cttaactgaagcgtacaacggataagctagtgcaaccaaaggcccagcaagaacatcgaa 288
Query: 535 gttattggccagcaccttgaggaaagatccggaccccatct 575
||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 287 gttcttggcaagaaccttgagcaaagatccggaccccatct 247
>gb|C26711.1|C26711 C26711 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12871_1A, mRNA sequence
Length = 355
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 515 ggcccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 311 ggcccagcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatc 252
Query: 575 t 575
|
Sbjct: 251 t 251
>gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C3112_1A, mRNA sequence
Length = 366
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 515 ggcccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 239 ggcccagcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatc 180
Query: 575 t 575
|
Sbjct: 179 t 179
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0007P22, complete sequence
Length = 148068
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 134609 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 134663
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0034P08, complete sequence
Length = 173088
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 23091 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 23145
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 975957 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 975903
>gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023504, whole
genome shotgun sequence
Length = 36420
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 20746 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 20800
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 4286976 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 4287030
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 18451958 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 18452012
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 22318207 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 22318153
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 69.9 bits (35), Expect = 2e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct: 22628118 gcaagaacatcgaagttcttggcaagaaccttgagcaaagatccggaccccatct 22628064
>gb|C28427.1|C28427 C28427 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61050_1A, mRNA sequence
Length = 445
Score = 67.9 bits (34), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 515 ggcccggcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatc 574
||||| ||||| ||||||||||| ||||| || |||||||| |||||| |||||||||||
Sbjct: 352 ggcccagcaagaacatcgaagttcttggcaagaaccttgagcaaagatncggaccccatc 293
Query: 575 t 575
|
Sbjct: 292 t 292
>gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0030269, DNA sequence
Length = 173
Score = 60.0 bits (30), Expect = 2e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 421 cacccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaac 480
||||||||| |||| ||| |||||||||||||||| | |||||| ||||| |||| |||
Sbjct: 166 cacccagtatgtgacccattgctgatcatctacagcagattttgtttctatcgctcgaac 107
Query: 481 agaagcatat 490
||| ||||||
Sbjct: 106 agatgcatat 97
>gb|CF293669.1|CF293669 30DGS--02-O24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O24, mRNA sequence
Length = 627
Score = 58.0 bits (29), Expect = 8e-006
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 164 tgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctcattt 223
||||||||||||||||| |||||| |||||||||| ||||| || || || |||
Sbjct: 498 tgttcaatatatctctccgcagctgatagcacatcatcaggtttactcaggttttctttt 557
Query: 224 cttnnaatataccatatgttnactatttggcggttcacaaacattggccg 273
||| || |||||| | || |||||||| || |||||||||||||||||
Sbjct: 558 cttggaacataccagacatttactatttgacgattcacaaacattggccg 607
>gb|AU031566.1|AU031566 AU031566 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61861_1A, mRNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 50 acccagtaggtgagccattgctgatcatc 22
>gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002277, whole
genome shotgun sequence
Length = 11086
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 6695 acccagtaggtgagccattgctgatcatc 6667
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 30438763 acccagtaggtgagccattgctgatcatc 30438791
>ref|NM_191863.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 387
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 59 acccagtaggtgagccattgctgatcatc 31
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 4886146 acccagtaggtgagccattgctgatcatc 4886174
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0456A01
Length = 143710
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 43820 acccagtaggtgagccattgctgatcatc 43848
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0042A10
Length = 146840
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 146412 acccagtaggtgagccattgctgatcatc 146440
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 4830393 acccagtaggtgagccattgctgatcatc 4830421
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 30032114 acccagtaggtgagccattgctgatcatc 30032142
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatcatc 450
|||||||| |||||||| |||||||||||
Sbjct: 30358093 acccagtaggtgagccattgctgatcatc 30358121
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 734,243
Number of Sequences: 438736
Number of extensions: 734243
Number of successful extensions: 3900
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3660
Number of HSP's gapped (non-prelim): 221
length of query: 824
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 803
effective length of database: 2,791,206,460
effective search space: 2241338787380
effective search space used: 2241338787380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)