BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing t... 466 e-128
dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA... 466 e-128
dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA... 466 e-128
gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid c... 353 1e-094
gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (ja... 323 1e-085
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) c... 242 3e-061
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 242 3e-061
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA... 212 3e-052
ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA 212 3e-052
gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (jap... 210 1e-051
gb|AU102145.1|AU102145 AU102145 Rice callus Oryza sativa (j... 168 4e-039
gb|CF293669.1|CF293669 30DGS--02-O24.b1 Rice leaf plasmid c... 163 2e-037
gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (... 143 2e-031
dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature lea... 123 2e-025
gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (ja... 115 5e-023
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 109 3e-021
gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) c... 109 3e-021
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 109 3e-021
dbj|AP005733.3| Oryza sativa (japonica cultivar-group) geno... 109 3e-021
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 109 3e-021
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 109 3e-021
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 109 3e-021
gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japo... 103 2e-019
gb|C26711.1|C26711 C26711 Rice callus cDNA Oryza sativa (ja... 82 7e-013
gb|AC109594.2| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|AC109365.2| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 78 1e-011
gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) c... 78 1e-011
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 78 1e-011
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|C28427.1|C28427 C28427 Rice callus cDNA Oryza sativa (ja... 76 4e-011
gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativ... 66 4e-008
>gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-K23, mRNA sequence
Length = 638
Score = 466 bits (235), Expect = e-128
Identities = 400/455 (87%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 142 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 201
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 202 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 261
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 262 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatcactttgtttga 321
Query: 283 gctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctt 342
||| |||||||||||| | || || |||||||| |||||||| ||||||||| |||||||
Sbjct: 322 gcttacttttgctccagtaattgaatggcttcctttttggtcctatgcaaagttgttctt 381
Query: 343 taactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgt 402
||||||||||||||||| ||||| ||| |||||||||| |||||||| || || |||||
Sbjct: 382 caactgctggttggtcttaccttgcttccatggtgctgcttatgtttatgatcactttgt 441
Query: 403 gcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaa 462
|||||||||||||||||| || |||||||| || | |||||| |||||||||| || ||
Sbjct: 442 gcggccaatgtttgtgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 501
Query: 463 gctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacc 522
|| ||||| |||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 502 cctgagtaaacctgatgatgtgctatcagctgcggagagatatattgaacagaatggacc 561
Query: 523 agaagcatttgagaagctcatcagcaagtctacga 557
||||||||||||||| |||||||||||||||||||
Sbjct: 562 agaagcatttgagaaactcatcagcaagtctacga 596
>dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A03, full
insert sequence
Length = 1072
Score = 466 bits (235), Expect = e-128
Identities = 400/455 (87%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 113 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 172
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 173 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 232
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 233 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatcactttgtttga 292
Query: 283 gctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctt 342
||| |||||||||||| | || || |||||||| |||||||| ||||||||| |||||||
Sbjct: 293 gcttacttttgctccagtaattgaatggcttcctttttggtcctatgcaaagttgttctt 352
Query: 343 taactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgt 402
||||||||||||||||| ||||| ||| |||||||||| |||||||| || || |||||
Sbjct: 353 caactgctggttggtcttaccttgcttccatggtgctgcttatgtttatgatcactttgt 412
Query: 403 gcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaa 462
|||||||||||||||||| || |||||||| || | |||||| |||||||||| || ||
Sbjct: 413 gcggccaatgtttgtgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 472
Query: 463 gctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacc 522
|| ||||| |||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 473 cctgagtaaacctgatgatgtgctatcagctgcggagagatatattgaacagaatggacc 532
Query: 523 agaagcatttgagaagctcatcagcaagtctacga 557
||||||||||||||| |||||||||||||||||||
Sbjct: 533 agaagcatttgagaaactcatcagcaagtctacga 567
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 645 agagaatcatggggcgaaaatccattctatgataaaaa 682
>dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106M05, full
insert sequence
Length = 1084
Score = 466 bits (235), Expect = e-128
Identities = 400/455 (87%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 170 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 229
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 230 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 289
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 290 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatcactttgtttga 349
Query: 283 gctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctt 342
||| |||||||||||| | || || |||||||| |||||||| ||||||||| |||||||
Sbjct: 350 gcttacttttgctccagtaattgaatggcttcctttttggtcctatgcaaagttgttctt 409
Query: 343 taactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgt 402
||||||||||||||||| ||||| ||| |||||||||| |||||||| || || |||||
Sbjct: 410 caactgctggttggtcttaccttgcttccatggtgctgcttatgtttatgatcactttgt 469
Query: 403 gcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaa 462
|||||||||||||||||| || |||||||| || | |||||| |||||||||| || ||
Sbjct: 470 gcggccaatgtttgtgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 529
Query: 463 gctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacc 522
|| ||||| |||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 530 cctgagtaaacctgatgatgtgctatcagctgcggagagatatattgaacagaatggacc 589
Query: 523 agaagcatttgagaagctcatcagcaagtctacga 557
||||||||||||||| |||||||||||||||||||
Sbjct: 590 agaagcatttgagaaactcatcagcaagtctacga 624
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 702 agagaatcatggggcgaaaatccattctatgataaaaa 739
>gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O24, mRNA sequence
Length = 522
Score = 353 bits (178), Expect = 1e-094
Identities = 292/330 (88%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 174 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 233
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 234 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 293
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 294 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatcactttgtttga 353
Query: 283 gctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctt 342
||| |||||||||||| | || || |||||||| |||||||| ||||||||| |||||||
Sbjct: 354 gcttacttttgctccagtaattgaatggcttcctttttggtcctatgcaaagttgttctt 413
Query: 343 taactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgt 402
||||||||||||||||| ||||| ||| |||||||||| |||||||| || || |||||
Sbjct: 414 caactgctggttggtcttaccttgcttccatggtgctgcttatgtttatgatcactttgt 473
Query: 403 gcggccaatgtttgtgaaccgccaaatagt 432
|||||||||||||||||| || ||||||||
Sbjct: 474 gcggccaatgtttgtgaatcgtcaaatagt 503
>gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60938_1A, mRNA sequence
Length = 463
Score = 323 bits (163), Expect = 1e-085
Identities = 284/326 (87%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 129 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 188
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 189 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 248
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| ||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct: 249 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatnactttgtttga 308
Query: 283 gctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctt 342
||| |||||||||||| | || || |||||||| |||||||| ||||||||| |||||||
Sbjct: 309 gcttacttttgctccagtaattgaatggcttcctttttggtcctatgcaaagttgttctt 368
Query: 343 taactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgt 402
||||||||||||| ||| ||||| ||| |||| ||||| |||| ||| || || |||||
Sbjct: 369 caactgctggttggncttaccttgcttccatggngctgcttatgnttatgatcactttgt 428
Query: 403 gcggccaatgtttgtgaaccgccaaa 428
|||||||||||||||||| || ||||
Sbjct: 429 gcggccaatgtttgtgaatcgncaaa 454
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 88354 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 88295
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 88294 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 88235
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 88234 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 88175
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 88174 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 88115
Query: 549 ag 550
||
Sbjct: 88114 ag 88113
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 88777 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 88718
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 88717 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 88666
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 90386 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 90329
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 87482 agagaatcatggggcgaaaatccattctatgataaaaa 87445
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 6104 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6045
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 6044 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 5985
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 5984 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 5925
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 5924 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 5865
Query: 549 ag 550
||
Sbjct: 5864 ag 5863
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 6527 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 6468
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 6467 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 6416
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 8136 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 8079
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 5232 agagaatcatggggcgaaaatccattctatgataaaaa 5195
>gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013344, whole
genome shotgun sequence
Length = 27471
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 19304 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 19363
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 19364 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 19423
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 19424 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 19483
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 19484 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 19543
Query: 549 ag 550
||
Sbjct: 19544 ag 19545
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 18881 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 18940
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 18941 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 18992
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 17272 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 17329
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 20176 agagaatcatggggcgaaaatccattctatgataaaaa 20213
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 2263558 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 2263499
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 2263498 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 2263439
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 2263438 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 2263379
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 2263378 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 2263319
Query: 549 ag 550
||
Sbjct: 2263318 ag 2263317
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 2263981 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 2263922
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 2263921 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 2263870
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 2265590 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 2265533
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 2262686 agagaatcatggggcgaaaatccattctatgataaaaa 2262649
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 6500200 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6500141
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 6500140 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 6500081
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 6500080 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 6500021
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 6500020 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 6499961
Query: 549 ag 550
||
Sbjct: 6499960 ag 6499959
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 6500623 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 6500564
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 6500563 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 6500512
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 6502232 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 6502175
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 6499328 agagaatcatggggcgaaaatccattctatgataaaaa 6499291
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 6500200 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6500141
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 6500140 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 6500081
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 6500080 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 6500021
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 6500020 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 6499961
Query: 549 ag 550
||
Sbjct: 6499960 ag 6499959
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 6500623 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 6500564
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 6500563 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 6500512
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 6502232 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 6502175
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 6499328 agagaatcatggggcgaaaatccattctatgataaaaa 6499291
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 242 bits (122), Expect = 3e-061
Identities = 212/242 (87%)
Strand = Plus / Minus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct: 6571978 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6571919
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
|| |||||||||| |||||||| || || ||||||||||||||||||||||| || ||||
Sbjct: 6571918 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 6571859
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
|||| || | |||||| |||||||||| || || || ||||| |||||||||| || |
Sbjct: 6571858 tagtaaatgtctggtatgttccaagaaaagaaaacctgagtaaacctgatgatgtgctat 6571799
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 6571798 cagctgcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagca 6571739
Query: 549 ag 550
||
Sbjct: 6571738 ag 6571737
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 6572401 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 6572342
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 6572341 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 6572290
Score = 75.8 bits (38), Expect = 4e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccggg 160
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct: 6574010 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccggg 6573953
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 6571106 agagaatcatggggcgaaaatccattctatgataaaaa 6571069
>dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full
insert sequence
Length = 932
Score = 212 bits (107), Expect = 3e-052
Identities = 287/347 (82%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggccactcata 169
||||||||||||||||||||| ||| |||||||| ||||| ||||| ||||| | |
Sbjct: 151 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgcggggcctatagtt 210
Query: 170 tcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagat 229
|||||||||||||| |||||||| |||||| |||| ||||| |||||| | ||||||||
Sbjct: 211 tcacttgcttatccactatatgcatctgttcgagcgatagaaacaaaatctgctgtagat 270
Query: 230 gatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaact 289
|||||||| |||||||| ||||||||||||||||| ||||||||| | |||||||| |||
Sbjct: 271 gatcagcaatggctcacatactgggtgttgtactcgtttatcactctatttgagctcact 330
Query: 290 tttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgc 349
||| |||| | | || |||||||| || ||||| ||||| || |||| || || |||
Sbjct: 331 ttttctccggtacttgaatggcttcctttatggtcttatgctaaattgtttttcaattgc 390
Query: 350 tggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtgcggcca 409
|||||||||||||| | |||||||||||||| |||| || || || |||||| |||||
Sbjct: 391 tggttggtcttgccctacttcaatggtgctgcacatgtctatgaacactttgtgaggcca 450
Query: 410 atgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaa 456
||| |||| |||| |||||||| || || ||||| || ||||||||
Sbjct: 451 atggttgtcaaccagcaaatagttaatatctggtacatcccaagaaa 497
>ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 932
Score = 212 bits (107), Expect = 3e-052
Identities = 287/347 (82%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggccactcata 169
||||||||||||||||||||| ||| |||||||| ||||| ||||| ||||| | |
Sbjct: 151 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgcggggcctatagtt 210
Query: 170 tcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagat 229
|||||||||||||| |||||||| |||||| |||| ||||| |||||| | ||||||||
Sbjct: 211 tcacttgcttatccactatatgcatctgttcgagcgatagaaacaaaatctgctgtagat 270
Query: 230 gatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaact 289
|||||||| |||||||| ||||||||||||||||| ||||||||| | |||||||| |||
Sbjct: 271 gatcagcaatggctcacatactgggtgttgtactcgtttatcactctatttgagctcact 330
Query: 290 tttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgc 349
||| |||| | | || |||||||| || ||||| ||||| || |||| || || |||
Sbjct: 331 ttttctccggtacttgaatggcttcctttatggtcttatgctaaattgtttttcaattgc 390
Query: 350 tggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtgcggcca 409
|||||||||||||| | |||||||||||||| |||| || || || |||||| |||||
Sbjct: 391 tggttggtcttgccctacttcaatggtgctgcacatgtctatgaacactttgtgaggcca 450
Query: 410 atgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaa 456
||| |||| |||| |||||||| || || ||||| || ||||||||
Sbjct: 451 atggttgtcaaccagcaaatagttaatatctggtacatcccaagaaa 497
>gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10978_1A, mRNA sequence
Length = 346
Score = 210 bits (106), Expect = 1e-051
Identities = 188/214 (87%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 133 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 192
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | | |||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct: 193 attagtttcacttgcttatccattatatgcctctgtgagagcaatagaaacaaaatctcc 252
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcac-tttgtttg 281
||| ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct: 253 tgttgatgatcagcaatggctcacttactgggtgctgtactcgtttatcacttttgtttg 312
Query: 282 agctaacttttgctccaattatcgagtggcttcc 315
|||| |||||||||||| | || || ||||||||
Sbjct: 313 agcttacttttgctccagtaattgaatggcttcc 346
>gb|AU102145.1|AU102145 AU102145 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10978, mRNA sequence
Length = 714
Score = 168 bits (85), Expect = 4e-039
Identities = 159/184 (86%)
Strand = Plus / Plus
Query: 374 ggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtg 433
|||||||| |||||||| || || |||||||| |||||||||||||| || ||||||||
Sbjct: 5 ggtgctgcttatgtttatgatcactttgtgcgnccaatgtttgtgaatcgtcaaatagta 64
Query: 434 aacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagct 493
|| | |||||| |||||||||| || | || ||||| |||||||||| || ||||||
Sbjct: 65 aatgtctggtatgttccaagaaaagaaaccctgagtaaacctgatgatgtgctatcagct 124
Query: 494 gcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtct 553
|| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 125 gcggagagatatattgaacagaatggaccagaagcatttgagaaactcatcagcaagtct 184
Query: 554 acga 557
||||
Sbjct: 185 acga 188
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 266 agagaatcatggggcgaaaatccattctatgataaaaa 303
>gb|CF293669.1|CF293669 30DGS--02-O24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O24, mRNA sequence
Length = 627
Score = 163 bits (82), Expect = 2e-037
Identities = 151/174 (86%)
Strand = Plus / Minus
Query: 384 atgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggt 443
||||||| || || ||||||||||||||||||||||| || |||||||| || | ||||
Sbjct: 627 atgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaatagtaaatgtctggt 568
Query: 444 atattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgcagagagat 503
|| |||||||||| || || || ||||| |||||||||| || |||||||| |||||||
Sbjct: 567 atgttccaagaaaagaaaacctgagtaaacctgatgatgtgctatcagctgcggagagat 508
Query: 504 atattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctacga 557
|||||||||| || |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 507 atattgaacagaatggaccagaagcatttgagaaactcatcagcaagtttacga 454
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 632 agagaatcgtggggcgaaaatcccttctacgacaaaaa 669
|||||||| |||||||||||||| ||||| || |||||
Sbjct: 376 agagaatcatggggcgaaaatccattctatgataaaaa 339
>gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025H11f, DNA sequence
Length = 771
Score = 143 bits (72), Expect = 2e-031
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||
Sbjct: 491 atatgcctctgtgagagcaatagaaacaaaatctcctgttgatgatcagcaatggctcac 550
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcca 298
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 551 ttactgggtgctgtactcgtttatcactttgtttgagcttacttttgctcca 602
>dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130B07, full
insert sequence
Length = 1430
Score = 127 bits (64), Expect = 1e-026
Identities = 274/344 (79%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 247 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgctgggc 306
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
| | | |||| |||||||| | || ||||| |||| |||||||| || ||| |
Sbjct: 307 ctttggttgcactagcttatccgttgtacgcttcagttaaggcaatagaaaccaaatccc 366
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||| |||||||| || |||||||| ||||||||| |||||||||| || || ||||||
Sbjct: 367 ctgtggatgatcaacaatggctcacatactgggtgatgtactcattaataacactgtttg 426
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| || ||||| ||||||| |||||||||| |||||| ||| | || || |||
Sbjct: 427 agctcacatttgcatcaattattcagtggcttcctttttggccatctatgaaattgatct 486
Query: 342 ttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttg 401
||| |||||| | |||||||| | ||||||||||| |||| ||| ||| | ||| ||
Sbjct: 487 ttatttgctggcttgtcttgccatacttcaatggtgcagcctttgtgtaccaaaattatg 546
Query: 402 tgcggccaatgtttgtgaaccgccaaatagtgaacatatggtat 445
|| | || ||||||||||| | |||||| || ||||| ||||||
Sbjct: 547 tgagacctatgtttgtgaagcaccaaatggttaacatttggtat 590
>gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60691_1A, mRNA sequence
Length = 314
Score = 123 bits (62), Expect = 2e-025
Identities = 139/163 (85%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct: 152 gatggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcc 211
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatag-agacaaaaaatc 221
| | | ||| |||||||||| ||||||| ||||| |||| ||||| | |||||| ||
Sbjct: 212 attagtttcanttgcttatccattatatgcctctgtgagagnaatagaaaacaaaatctc 271
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactc 264
|||| |||| |||||| |||||||||||||||| | |||||||
Sbjct: 272 ctgttgatg-tcagcaatggctcacttactgggngctgtactc 313
>gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51873_1A, mRNA sequence
Length = 445
Score = 115 bits (58), Expect = 5e-023
Identities = 132/156 (84%), Gaps = 1/156 (0%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggccactcata 169
||||| ||||||||||||||| ||| |||||||| ||||| ||||| ||||| | |
Sbjct: 202 tccggntctttcctcaaggtggtggtaaagaacttggatgttcttgcggggcctatagtt 261
Query: 170 tcacttgcttatcctctatatgcttctgtta-gagcaatagagacaaaaaatcctgtaga 228
|||||||||||||| |||||||| ||| || |||| ||||| |||||| | |||||||
Sbjct: 262 tcacttgcttatccactatatgcatctntttcgagcgatagaaacaaaatctgctgtaga 321
Query: 229 tgatcagcagtggctcacttactgggtgttgtactc 264
||||||||| |||||||| |||||||||||||||||
Sbjct: 322 tgatcagcaatggctcacatactgggtgttgtactc 357
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078N11
Length = 155168
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 62237 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 62296
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 62297 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 62347
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 62648 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 62707
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 62708 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 62767
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 62768 tagttaatatctggtacatcccaagaaa 62795
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 61236 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 61282
>gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005417, whole
genome shotgun sequence
Length = 20497
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 14075 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 14134
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 14135 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 14185
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 14486 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 14545
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 14546 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 14605
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 14606 tagttaatatctggtacatcccaagaaa 14633
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 13074 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 13120
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 6591839 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 6591898
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 6591899 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 6591949
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 6592250 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 6592309
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 6592310 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 6592369
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 6592370 tagttaatatctggtacatcccaagaaa 6592397
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 6590838 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 6590884
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0024K03
Length = 119796
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 109414 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 109473
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 109474 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 109524
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 109825 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 109884
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 109885 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 109944
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 109945 tagttaatatctggtacatcccaagaaa 109972
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 108413 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 108459
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 17987000 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 17987059
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 17987060 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 17987110
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 17987411 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 17987470
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 17987471 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 17987530
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 17987531 tagttaatatctggtacatcccaagaaa 17987558
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 17985999 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 17986045
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 31440064 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 31440123
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 31440124 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 31440174
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 31440475 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 31440534
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 31440535 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 31440594
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 31440595 tagttaatatctggtacatcccaagaaa 31440622
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 31439063 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 31439109
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 109 bits (55), Expect = 3e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||||||||
Sbjct: 31426840 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatggctcac 31426899
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctcc 297
||||||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct: 31426900 atactgggtgttgtactcgtttatcactctatttgagctcactttttctcc 31426950
Score = 71.9 bits (36), Expect = 7e-010
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
||||||| || ||||| ||||| || |||| || || ||||||||||||||||| | |
Sbjct: 31427251 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 31427310
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||| || || || |||||| |||||||| |||| |||| ||||
Sbjct: 31427311 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 31427370
Query: 429 tagtgaacatatggtatattccaagaaa 456
|||| || || ||||| || ||||||||
Sbjct: 31427371 tagttaatatctggtacatcccaagaaa 31427398
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct: 31425839 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgc 31425885
>gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C3112_1A, mRNA sequence
Length = 366
Score = 103 bits (52), Expect = 2e-019
Identities = 151/184 (82%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 179 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgctgggc 238
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
| | | |||| |||||||| | || ||||| |||| |||||||| || ||| |
Sbjct: 239 ctttggttgcactagcttatccgttgtacgcttcagttaaggcaatagaaaccaaatccc 298
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||| |||||||| || |||||||| ||||||||| |||||||||| || || ||||||
Sbjct: 299 ctgtggatgatcaacaatggctcacatactgggtgatgtactcattaataacactgtttg 358
Query: 282 agct 285
||||
Sbjct: 359 agct 362
>gb|C26711.1|C26711 C26711 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12871_1A, mRNA sequence
Length = 355
Score = 81.8 bits (41), Expect = 7e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 251 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgctgggc 310
Query: 162 c 162
|
Sbjct: 311 c 311
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0007P22, complete sequence
Length = 148068
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 134663 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 134609
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0034P08, complete sequence
Length = 173088
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 23145 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 23091
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 975903 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 975957
>gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023504, whole
genome shotgun sequence
Length = 36420
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 20800 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 20746
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 4287030 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 4286976
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 18452012 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 18451958
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 22318153 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 22318207
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 22628064 agatggggtccggatctttgctcaaggttcttgccaagaacttcgatgttcttgc 22628118
>gb|C28427.1|C28427 C28427 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61050_1A, mRNA sequence
Length = 445
Score = 75.8 bits (38), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||| |||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 292 agatggggtccgnatctttgctcaaggttcttgccaagaacttcgatgttcttgctgggc 351
Query: 162 c 162
|
Sbjct: 352 c 352
>gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0030269, DNA sequence
Length = 173
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
|||||| |||||| |||| ||||| |||||| | |||||||||||||||| ||| ||||
Sbjct: 97 atatgcatctgttcgagcgatagaaacaaaatctgctgtagatgatcagcaatgggtcac 156
Query: 247 ttactgggtgttgtact 263
||||||||| ||||||
Sbjct: 157 atactgggtgctgtact 173
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,508,270
Number of Sequences: 438736
Number of extensions: 1508270
Number of successful extensions: 8723
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8421
Number of HSP's gapped (non-prelim): 293
length of query: 1044
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1023
effective length of database: 2,791,206,460
effective search space: 2855404208580
effective search space used: 2855404208580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)