BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102184.1| Oryza sativa (japonica cultivar-group) cDNA... 559 e-157
ref|XM_477670.1| Oryza sativa (japonica cultivar-group), mRNA 559 e-157
gb|CX728620.1|CX728620 OSJNEf09O05.r OSJNEf Oryza sativa (j... 287 4e-075
dbj|AP003889.2| Oryza sativa (japonica cultivar-group) chro... 208 3e-051
dbj|AP005325.5| Oryza sativa (japonica cultivar-group) geno... 208 3e-051
gb|AACV01015874.1| Oryza sativa (japonica cultivar-group) c... 208 3e-051
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 208 3e-051
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 208 3e-051
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 208 3e-051
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 208 3e-051
dbj|AK062802.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.098
dbj|AK063622.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.098
gb|AACV01011750.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AC136224.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AC136227.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 44 0.098
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP002881.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AK062603.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AP003206.4| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.39
ref|XM_462852.1| Oryza sativa (japonica cultivar-group), p... 42 0.39
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 42 0.39
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.39
>dbj|AK102184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086M16, full
insert sequence
Length = 895
Score = 559 bits (282), Expect = e-157
Identities = 459/518 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 27 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 86
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 87 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 146
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 147 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 206
Query: 200 atcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatacta 259
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 207 atcaacgaggacctggtttgcgatgagcttgaggacgtgatggaagaaggtggtatacta 266
Query: 260 gtagattaccacggatgtgatttctttccagaacgttggtttgacctcgtagttgtgctc 319
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 gtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctc 326
Query: 320 cagactgacaactcaattctgcatgatcgcctgacgggcagaggttacatgggttccaag 379
|| || || ||||||||||||||||||||| |||| |||||||||| |||||| |||||
Sbjct: 327 caaacagataactcaattctgcatgatcgcttgactagcagaggttatatgggtgccaag 386
Query: 380 ctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgaggaggcgagggagagc 439
||| | ||||||||||| || ||||| ||||| ||||||| |||||||| |||||||||
Sbjct: 387 ctcacaaacaacatagaatgtgaaattttccagatgctcctggaggaggcaagggagagc 446
Query: 440 tacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatattagtaggaac 499
|||| |||||| || |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 447 tacaaagaggagatagtgatgcccttgcgaagtgacaatgtggaggatatcagtaggaat 506
Query: 500 gtaggtgcattgacagactgggtaaacaattggagacc 537
|| || || ||||||| ||| ||||||| ||||||||
Sbjct: 507 gtgggcacactgacagaatggataaacaactggagacc 544
>ref|XM_477670.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 895
Score = 559 bits (282), Expect = e-157
Identities = 459/518 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 27 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 86
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 87 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 146
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 147 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 206
Query: 200 atcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatacta 259
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 207 atcaacgaggacctggtttgcgatgagcttgaggacgtgatggaagaaggtggtatacta 266
Query: 260 gtagattaccacggatgtgatttctttccagaacgttggtttgacctcgtagttgtgctc 319
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 gtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctc 326
Query: 320 cagactgacaactcaattctgcatgatcgcctgacgggcagaggttacatgggttccaag 379
|| || || ||||||||||||||||||||| |||| |||||||||| |||||| |||||
Sbjct: 327 caaacagataactcaattctgcatgatcgcttgactagcagaggttatatgggtgccaag 386
Query: 380 ctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgaggaggcgagggagagc 439
||| | ||||||||||| || ||||| ||||| ||||||| |||||||| |||||||||
Sbjct: 387 ctcacaaacaacatagaatgtgaaattttccagatgctcctggaggaggcaagggagagc 446
Query: 440 tacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatattagtaggaac 499
|||| |||||| || |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 447 tacaaagaggagatagtgatgcccttgcgaagtgacaatgtggaggatatcagtaggaat 506
Query: 500 gtaggtgcattgacagactgggtaaacaattggagacc 537
|| || || ||||||| ||| ||||||| ||||||||
Sbjct: 507 gtgggcacactgacagaatggataaacaactggagacc 544
>gb|CX728620.1|CX728620 OSJNEf09O05.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf09O05 3', mRNA sequence
Length = 600
Score = 287 bits (145), Expect = 4e-075
Identities = 250/285 (87%)
Strand = Plus / Minus
Query: 253 tatactagtagattaccacggatgtgatttctttccagaacgttggtttgacctcgtagt 312
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 600 tatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagt 541
Query: 313 tgtgctccagactgacaactcaattctgcatgatcgcctgacgggcagaggttacatggg 372
||||||||| || || ||||||||||||||||||||| |||| |||||||||| |||||
Sbjct: 540 tgtgctccaaacagataactcaattctgcatgatcgcttgactagcagaggttatatggg 481
Query: 373 ttccaagctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgaggaggcgag 432
| |||||||| | ||||||||||| || ||||| ||||| ||||| | |||||||| ||
Sbjct: 480 tgccaagctcacaaacaacatagaatgtgaaattttccagatgctcttggaggaggcaag 421
Query: 433 ggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatattag 492
||||||||||| |||||| || |||||||| |||||||||| ||| ||||||||||| ||
Sbjct: 420 ggagagctacaaagaggagatagtgatgcccttgcgaagtgccaatgtggaggatatcag 361
Query: 493 taggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
|||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 360 taggaatgtgggcacactgacagaatggataaacaactggagacc 316
>dbj|AP003889.2| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1213_A07,
*** SEQUENCING IN PROGRESS ***
Length = 119829
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 18618 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 18677
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 18678 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 18737
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 18738 ctgcatgatcgcttgac 18754
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 15238 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 15297
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 15298 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 15357
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 15358 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 15417
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 15418 atcaacgaggacctggt 15434
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 18844 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 18903
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 18904 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 18963
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 18964 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 19023
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0710F09
Length = 198867
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 134462 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 134521
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 134522 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 134581
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 134582 ctgcatgatcgcttgac 134598
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 131082 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 131141
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 131142 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 131201
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 131202 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 131261
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 131262 atcaacgaggacctggt 131278
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 134688 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 134747
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 134748 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 134807
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 134808 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 134867
>gb|AACV01015874.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015874, whole
genome shotgun sequence
Length = 11733
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4631 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 4690
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 4691 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 4750
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 4751 ctgcatgatcgcttgac 4767
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1251 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 1310
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 1311 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 1370
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 1371 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 1430
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 1431 atcaacgaggacctggt 1447
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 4857 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 4916
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 4917 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 4976
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 4977 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 5036
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 657001 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 657060
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 657061 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 657120
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 657121 ctgcatgatcgcttgac 657137
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 653621 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 653680
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 653681 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 653740
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 653741 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 653800
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 653801 atcaacgaggacctggt 653817
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 657227 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 657286
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 657287 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 657346
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 657347 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 657406
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060
genomic scaffold, whole genome shotgun sequence
Length = 1552265
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 647258 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 647317
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 647318 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 647377
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 647378 ctgcatgatcgcttgac 647394
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 643878 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 643937
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 643938 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 643997
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 643998 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 644057
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 644058 atcaacgaggacctggt 644074
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 647484 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 647543
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 647544 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 647603
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 647604 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 647663
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12080735 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 12080794
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 12080795 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 12080854
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 12080855 ctgcatgatcgcttgac 12080871
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 12077355 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 12077414
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 12077415 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 12077474
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 12077475 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 12077534
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 12077535 atcaacgaggacctggt 12077551
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 12080961 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 12081020
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 12081021 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 12081080
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 12081081 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 12081140
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 208 bits (105), Expect = 3e-051
Identities = 129/137 (94%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12876338 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccatggatgt 12876397
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 12876398 gatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagataactcaatt 12876457
Query: 338 ctgcatgatcgcctgac 354
|||||||||||| ||||
Sbjct: 12876458 ctgcatgatcgcttgac 12876474
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 20 ggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggacgccggggacgggg 79
||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 12872958 ggcggcggcgcgcggcgcacgcggccgaacgtgctggtgacggggacgccgggcacgggg 12873017
Query: 80 aagacgaccacgtgctcgctccttgccgacgccgcaggcctccgccacgtcaacatcggc 139
|||||||| |||||||| ||||| |||||||| | | |||||||||| ||||||||||
Sbjct: 12873018 aagacgacgacgtgctcactcctcgccgacgcggtggacctccgccacatcaacatcggg 12873077
Query: 140 gacctagtccgcgagaagagccttcacgacggctgggacgccgacctcgagtgccatgtc 199
||||| ||||||||||||||||| || ||||||||||||| || ||||||||||| ||
Sbjct: 12873078 gacctcgtccgcgagaagagcctccatgacggctgggacgaggagctcgagtgccacatc 12873137
Query: 200 atcaacgaggacctggt 216
|||||||||||||||||
Sbjct: 12873138 atcaacgaggacctggt 12873154
Score = 159 bits (80), Expect = 2e-036
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||| ||||
Sbjct: 12876564 cagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccagatgct 12876623
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 12876624 cctggaggaggcaagggagagctacaaagaggagatagtgatgcccttgcgaagtgacaa 12876683
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacc 537
||||||||||| |||||||| || || || ||||||| ||| ||||||| ||||||||
Sbjct: 12876684 tgtggaggatatcagtaggaatgtgggcacactgacagaatggataaacaactggagacc 12876743
>dbj|AK062802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D02, full
insert sequence
Length = 843
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 367 agggagcggcggcggctcgcgg 388
>dbj|AK063622.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E08, full
insert sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 310 agggagcggcggcggctcgcgg 289
>gb|AACV01011750.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011750, whole
genome shotgun sequence
Length = 21042
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 9698 agggagcggcggcggctcgcgg 9677
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22,
complete sequence
Length = 166052
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 139352 agggagcggcggcggctcgcgg 139373
>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0109A13, complete sequence
Length = 134258
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 30280 agggagcggcggcggctcgcgg 30301
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 2337093 agggagcggcggcggctcgcgg 2337114
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 2280618 agggagcggcggcggctcgcgg 2280639
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 14546018 agggagcggcggcggctcgcgg 14546039
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agggagcggcggcggctcgcgg 34
||||||||||||||||||||||
Sbjct: 14803938 agggagcggcggcggctcgcgg 14803959
>dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0035H10
Length = 109475
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 106166 gccgcagggagcggcggcggc 106186
>dbj|AK062603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G12, full
insert sequence
Length = 1239
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 785 gccgcagggagcggcggcggc 805
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1146F03
Length = 137047
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 99226 gccgcagggagcggcggcggc 99246
>gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000830, whole
genome shotgun sequence
Length = 32756
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 29496 gccgcagggagcggcggcggc 29476
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 11205215 gccgcagggagcggcggcggc 11205235
>ref|XM_462852.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 954
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 694 gccgcagggagcggcggcggc 714
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 1154902 gccgcagggagcggcggcggc 1154922
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 11377373 gccgcagggagcggcggcggc 11377393
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 11377373 gccgcagggagcggcggcggc 11377393
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gccgcagggagcggcggcggc 28
|||||||||||||||||||||
Sbjct: 11207433 gccgcagggagcggcggcggc 11207453
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,422,523
Number of Sequences: 438736
Number of extensions: 1422523
Number of successful extensions: 13548
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13253
Number of HSP's gapped (non-prelim): 295
length of query: 687
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 666
effective length of database: 2,791,206,460
effective search space: 1858943502360
effective search space used: 1858943502360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)