BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA... 190 7e-046
gb|AC120987.2| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|AC136218.2| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) c... 174 4e-041
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 174 4e-041
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA... 133 1e-028
dbj|AP003575.2| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
dbj|AP005382.3| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) c... 133 1e-028
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 133 1e-028
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibbe... 133 1e-028
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (... 131 5e-028
dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chro... 131 5e-028
dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA... 131 5e-028
dbj|AP005636.2| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 131 5e-028
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3... 119 2e-024
gb|CV721089.1|CV721089 YBH--02-N09.b1 Rice before heading y... 82 4e-013
gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading y... 64 1e-007
gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading y... 64 1e-007
gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda ph... 64 1e-007
dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
gb|AC105769.2| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|AC108502.3| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|XM_475280.1| Oryza sativa (japonica cultivar-group), p... 64 1e-007
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CB000532.1|CB000532 S345C_D07 Rice cold stress germinati... 58 6e-006
gb|AQ257519.1|AQ257519 nbxb0018I16r CUGI Rice BAC Library O... 42 0.37
>dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G05, full
insert sequence
Length = 1086
Score = 190 bits (96), Expect = 7e-046
Identities = 177/204 (86%)
Strand = Plus / Plus
Query: 327 ccggcagcctccagccccacgagtgcggcggccggtgcgcggagcggtgctcggcgacgg 386
|||||||||||| ||| || |||||||| || ||||||||| | |||||||||||||||
Sbjct: 512 ccggcagcctccggccgcaagagtgcgggggtcggtgcgcgtacaggtgctcggcgacgg 571
Query: 387 cgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgc 446
||||| |||||||||| | |||||||||| ||||||||||| | ||||| |||||||
Sbjct: 572 cgtacaggaagccgtgcatgttcttctgccagaagtgctgcgcctcctgcctctgcgtgc 631
Query: 447 cgccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagc 506
|||||| ||||||||||||||| | | ||||||||||||||| | |||||||||||||
Sbjct: 632 tgccggggacctacggcaacaagcagtcgtgcccctgctacaacgattggaagaccaagc 691
Query: 507 ggggaggccccaagtgcccctagt 530
| ||||||||||||||||||||||
Sbjct: 692 gaggaggccccaagtgcccctagt 715
>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0007A06, complete sequence
Length = 148029
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 75451 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 75392
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 75391 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 75332
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 75331 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 75272
Query: 527 tagt 530
||||
Sbjct: 75271 tagt 75268
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0039A21, complete sequence
Length = 139074
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 7379 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 7320
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 7319 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 7260
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 7259 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 7200
Query: 527 tagt 530
||||
Sbjct: 7199 tagt 7196
>gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012019, whole
genome shotgun sequence
Length = 8587
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Plus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 5992 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 6051
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 6052 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 6111
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 6112 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 6171
Query: 527 tagt 530
||||
Sbjct: 6172 tagt 6175
>ref|NT_107210.1| Oryza sativa (japonica cultivar-group)
Length = 1353368
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 1033336 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 1033277
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 1033276 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 1033217
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 1033216 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 1033157
Query: 527 tagt 530
||||
Sbjct: 1033156 tagt 1033153
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043
genomic scaffold, whole genome shotgun sequence
Length = 11965857
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 466967 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 466908
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 466907 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 466848
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 466847 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 466788
Query: 527 tagt 530
||||
Sbjct: 466787 tagt 466784
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 3404962 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 3405009
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 17767280 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 17767221
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 17767220 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 17767161
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 17767160 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 17767101
Query: 527 tagt 530
||||
Sbjct: 17767100 tagt 17767097
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 20705275 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 20705322
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 174 bits (88), Expect = 4e-041
Identities = 160/184 (86%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||| || ||||||||| | |||||||||||||||||||| |||||||||| |
Sbjct: 18040124 gagtgcgggggtcggtgcgcgtacaggtgctcggcgacggcgtacaggaagccgtgcatg 18040065
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
|||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||||
Sbjct: 18040064 ttcttctgccagaagtgctgcgcctcctgcctctgcgtgctgccggggacctacggcaac 18040005
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||| | | ||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 18040004 aagcagtcgtgcccctgctacaacgattggaagaccaagcgaggaggccccaagtgcccc 18039945
Query: 527 tagt 530
||||
Sbjct: 18039944 tagt 18039941
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 21054359 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 21054406
>dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C07, full
insert sequence
Length = 433
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 246 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 305
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 306 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 356
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528B02
Length = 144495
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 24930 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 24871
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 24870 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 24820
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1001_B06
Length = 134810
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 129622 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 129563
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 129562 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 129512
>gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013512, whole
genome shotgun sequence
Length = 35802
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 28556 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 28615
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 28616 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 28666
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 4550881 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 4550822
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 4550821 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 4550771
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 275184 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 275125
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 275124 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 275074
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 8882836 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 8882777
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 8882776 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 8882726
>gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibberellin-stimulated
protein (Gsr1) gene, complete cds
Length = 881
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 435 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 494
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 495 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 545
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 133 bits (67), Expect = 1e-028
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 8859301 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 8859242
Query: 478 cccctgctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 8859241 cccctgctacaacaactggaagaccaaggaaggcggccccaagtgccccta 8859191
>gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0029E15f, DNA sequence
Length = 506
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Minus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 201 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 142
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 141 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 82
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 81 cggcggccccaagtgccc 64
>dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0439F12, ***
SEQUENCING IN PROGRESS ***
Length = 152695
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 145748 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 145807
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 145808 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 145867
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 145868 cggcggccccaagtgccc 145885
>dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H09, full
insert sequence
Length = 697
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 326 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 385
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 386 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 445
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 446 cggcggccccaagtgccc 463
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0707C02
Length = 163609
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 60882 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 60941
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 60942 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 61001
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 61002 cggcggccccaagtgccc 61019
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 467296 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 467355
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 467356 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 467415
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 467416 cggcggccccaagtgccc 467433
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 131 bits (66), Expect = 5e-028
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 14775493 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacgcctgcctctgcgtgcc 14775552
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 14775553 gtcgggcctctacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 14775612
Query: 508 gggaggccccaagtgccc 525
|| ||||||||||||||
Sbjct: 14775613 cggcggccccaagtgccc 14775630
>gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30180, mRNA sequence
Length = 313
Score = 119 bits (60), Expect = 2e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 418 caagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctg 477
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 220 caagtgctgcgccaagtgcctgtgcgtgccgcccggcacctacggcaacaagggcgcctg 279
Query: 478 cccctgctacaacaactggaagaccaag 505
||||||||||||||||||||||||||||
Sbjct: 280 cccctgctacaacaactggaagaccaag 307
>gb|CV721089.1|CV721089 YBH--02-N09.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--02-N09, mRNA sequence
Length = 453
Score = 81.8 bits (41), Expect = 4e-013
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 453 gcacctacggcaacaagaacacctgcccc-tgctacaacaactggaagaccaagcgggga 511
||||||||||||||||| | |||||||| |||||||||||||||||||||||| ||
Sbjct: 453 gcacctacggcaacaagggcgcctgccccctgctacaacaactggaagaccaaggaaggc 394
Query: 512 ggccccaagtgccccta 528
|||||||||||||||||
Sbjct: 393 ggccccaagtgccccta 377
>gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-N22, mRNA sequence
Length = 456
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 279 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 326
>gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-O15, mRNA sequence
Length = 451
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 272 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 319
>gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-J06,
mRNA sequence
Length = 490
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 276 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 323
>dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C10, full
insert sequence
Length = 1012
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 634 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 681
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
complete sequence
Length = 106166
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 33224 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 33271
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
complete sequence
Length = 103458
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 69737 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 69784
>gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012241, whole
genome shotgun sequence
Length = 28966
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 20655 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 20608
>ref|XM_475280.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 279
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 190 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 237
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 2359724 tgcgtgccgccgggcacctccggcaacgagaacgtctgcccctgctac 2359771
>gb|CB000532.1|CB000532 S345C_D07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 417
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 484 ctacaacaactggaagaccaagcggggaggccccaagtgccccta 528
|||||||||||||||||||||| || |||||||||||||||||
Sbjct: 1 ctacaacaactggaagaccaaggaaggcggccccaagtgccccta 45
>gb|AQ257519.1|AQ257519 nbxb0018I16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0018I16r, DNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.37
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 451 gggcacctacggcaacaagaacacctgcccctgctac 487
|||||||| ||||||| ||||| |||||||||||||
Sbjct: 424 gggcacctccggcaacgagaacgtctgcccctgctac 388
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,212,737
Number of Sequences: 438736
Number of extensions: 1212737
Number of successful extensions: 10153
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9941
Number of HSP's gapped (non-prelim): 205
length of query: 658
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 637
effective length of database: 2,791,206,460
effective search space: 1777998515020
effective search space used: 1777998515020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)